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Tuberculosis (TB) remains a global health problem and there is an ongoing effort to develop more effective therapies and new combination regimes that can reduce duration of treatment. The purpose of this study was to demonstrate utility of a physiologically‐based pharmacokinetic modeling approach to predict plasma and lung concentrations of 11 compounds used or under development as TB therapies (bedaquiline [and N‐desmethyl bedaquiline], clofazimine, cycloserine, ethambutol, ethionamide, isoniazid, kanamycin, linezolid, pyrazinamide, rifampicin, and rifapentine). Model accuracy was assessed by comparison of simulated plasma pharmacokinetic parameters with healthy volunteer data for compounds administered alone or in combination. Eighty‐four percent (area under the curve [AUC]) and 91% (maximum concentration [C max]) of simulated mean values were within 1.5‐fold of the observed data and the simulated drug‐drug interaction ratios were within 1.5‐fold (AUC) and twofold (C max) of the observed data for nine (AUC) and eight (C max) of the 10 cases. Following satisfactory recovery of plasma concentrations in healthy volunteers, model accuracy was assessed further (where patients’ with TB data were available) by comparing clinical data with simulated lung concentrations (9 compounds) and simulated lung: plasma concentration ratios (7 compounds). The 5th–95th percentiles for the simulated lung concentration data recovered between 13% (isoniazid and pyrazinamide) and 88% (pyrazinamide) of the observed data points (Am J Respir Crit Care Med, 198, 2018, 1208; Nat Med, 21, 2015, 1223; PLoS Med, 16, 2019, e1002773). The impact of uncertain model parameters, such as the fraction of drug unbound in lung tissue mass (fumass), is discussed. Additionally, the variability associated with the patient lung concentration data, which was sparse and included extensive within‐subject, interlaboratory, and experimental variability (as well interindividual variability) is reviewed. All presented models are transparently documented and are available as open‐source to aid further research.

Photoinduced electron transfer systems can mimic certain features of natural photosynthetic reaction centers, which are crucial for solar energy production. Among other tetra-pyrroles, the versatile chemical and photophysical properties of corroles make them very promising donors applicable in donor–acceptor complexes. Here, we present a first comprehensive study of ultrafast photoinduced electron transfer in a self-assembling sulfonated aluminum corrole–methylviologen complex combining visible and mid-IR transient absorption spectroscopy. The noncovalent D–A association of the corrole–methylviologen complex has the great advantage that photoinduced charge separation becomes possible even though the back electron transfer (BET) rate is large. Initial forward electron transfer from corrole to methylviologen is observed on an ∼130 fs time scale. Subsequent back electron transfer takes place with τBET = (1.8 ± 0.5) ps, revealing very complex relaxation dynamics. Direct probing in the mid-IR allows us to unravel the back electron transfer and cooling dynamics/electronic reorganization. Upon tracing the dynamics of the methylviologen-radical marker band at 1640 cm–1 and the C═C stretching of corrole at around 1500 cm–1, we observe that large amounts of excess energy survive the back transfer, leading to the formation of hot ground state absorption. A closer examination of the signal after 300 ps, surviving the back transfer, exhibits a charge-separation yield of 10–15%.

The wasp family Chrysididae (cuckoo wasps, gold wasps) comprises exclusively parasitoid and kleptoparasitic species, many of which feature a stunning iridescent coloration and phenotypic adaptations to their parasitic life style. Previous attempts to infer phylogenetic relationships among the family’s major lineages (subfamilies, tribes, genera) based on Sanger sequence data were insufficient to statistically resolve the monophyly and the phylogenetic position of the subfamily Amiseginae and the phylogenetic relationships among the tribes Allocoeliini, Chrysidini, Elampini, and Parnopini (Chrysidinae). Here, we present a phylogeny inferred from nucleotide sequence data of 492 nuclear single-copy genes (230,915 aligned amino acid sites) from 94 species of Chrysidoidea (representing Bethylidae, Chrysididae, Dryinidae, Plumariidae) and 45 outgroup species by combining RNA-seq and DNA target enrichment data. We find support for Amiseginae being more closely related to Cleptinae than to Chrysidinae. Furthermore, we find strong support for Allocoeliini being the sister lineage of all remaining Chrysidinae, whereas Elampini represent the sister lineage of Chrysidini and Parnopini. Our study corroborates results from a recent phylogenomic investigation, which revealed Chrysidoidea as likely paraphyletic.

The population pharmacokinetic model reported herein was developed using data from two phase 2 trials of irinotecan for treatment of malignant glioma in order to quantify the impact of concomitant therapy with enzyme-inducing antiepileptic drugs (EIAEDs) on irinotecan pharmacokinetics. Patients received weekly irinotecan doses of 100 to 400 mg/m2 and plasma samples were collected and analyzed for irinotecan and its APC, SN-38 and SN-38G metabolites. Non-linear mixed effects modeling was employed for population pharmacokinetic analysis. Concomitant therapy with phenytoin, phenobarbital or carbamazepine increased the clearances of irinotecan, SN-38 and SN-38G but not APC. SN-38 clearance was 2-fold higher with concomitant EIAED use resulting in 40% lower SN-38 exposure. Evaluation of additional covariates revealed no clinically relevant effects of sex or concomitant corticosteroid use. The population pharmacokinetic model suggests that a 1.7 fold increase in irinotecan dose may compensate for decreases in SN-38 exposure in the presence of concomitant EIAEDs. Although slightly more conservative, this dose adjustment is consistent with those recommended based on increases in maximally-tolerated dose for malignant glioma patients receiving EIAEDs, and may be an appropriate starting point for further investigation when extrapolating to other cancer types or alternative regimens.

The doping process in GaP core-shell nanowire pn-junctions using different precursors is evaluated by mapping the nanowires' electrostatic potential distribution by means of off-axis electron holography. Three precursors, triethyltin (TESn), ditertiarybutylselenide, and silane are investigated for n-type doping of nanowire shells; among them, TESn is shown to be the most efficient precursor. Off-axis electron holography reveals higher electrostatic potentials in the regions of nanowire cores grown by the vapor-liquid-solid (VLS) mechanism (axial growth) than the regions grown parasitically by the vapor-solid (VS) mechanism (radial growth), attributed to different incorporation efficiency between VLS and VS of unintentional p-type carbon doping originating from the trimethylgallium precursor. This study shows that off-axis electron holography of doped nanowires is unique in terms of the ability to map the electrostatic potential and thereby the active dopant distribution with high spatial resolution.

Cardiotoxicity is among the top drug safety concerns, and is of specific interest in tuberculosis, where this is a known or potential adverse event of current and emerging treatment regimens. As there is a need for a tool, beyond the QT interval, to quantify cardiotoxicity early in drug development, an empirical decision tree based classifier was developed to predict the risk of Torsades de pointes (TdP). The cardiac risk algorithm was developed using pseudo-electrocardiogram (ECG) outputs derived from cardiac myocyte electromechanical model simulations of increasing concentrations of 96 reference compounds which represented a range of clinical TdP risk. The algorithm correctly classified 89% of reference compounds with moderate sensitivity and high specificity (71 and 96%, respectively) as well as 10 out of 12 external validation compounds and the anti-TB drugs moxifloxacin and bedaquiline. The cardiac risk algorithm is suitable to help inform early drug development decisions in TB and will evolve with the addition of emerging data. Electronic supplementary material The online version of this article (10.1007/s10928-018-9580-2) contains supplementary material, which is available to authorized users.

Corroles are a developing class of tetrapyrrole-based molecules with significant chemical potential and relatively unexplored photophysical properties. We combined femtosecond broadband fluorescence up-conversion and fs broadband Vis-pump Vis-probe spectroscopy to comprehensively characterize the photoreaction of 5,10,15-tris-pentafluorophenyl-corrolato-antimony(V)-trans-difluoride (Sb-tpfc-F2). Upon fs Soret band excitation at ~400 nm, the energy relaxed almost completely to Q band electronic excited states with a time constant of 500 ± 100 fs; this is evident from the decay of Soret band fluorescence at around 430 nm and the rise time of Q band fluorescence, as well as from Q band stimulated emission signals at 600 and 650 nm with the same time constant. Relaxation processes on a time scale of 10 and 20 ps were observed in the fluorescence and absorption signals. Triplet formation showed a time constant of 400 ps, with an intersystem crossing yield from the Q band to the triplet manifold of between 95% and 99%. This efficient triplet formation is due to the spin-orbit coupling of the antimony ion.

Sulindac is a prescription-based non-steroidal anti-inflammatory drug (NSAID) that continues to be actively investigated as a candidate cancer chemoprevention agent. To further current understanding of sulindac bioavailability, metabolism, and disposition, we developed a population pharmacokinetic model for the parent compound and its active metabolites, sulindac sulfide, and exisulind. This analysis was based on data from 24 healthy subjects who participated in a bioequivalence study comparing two formulations of sulindac. The complex disposition of sulindac and its metabolites was described by a seven-compartment model featuring enterohepatic recirculation and is the first reported population pharmacokinetic model for sulindac. The derived model was used to explore effects of clinical variables on sulindac pharmacokinetics and revealed that body weight, creatinine clearance, and gender were significantly correlated with pharmacokinetic parameters. Moreover, the model quantifies the relative bioavailability of the sulindac formulations and illustrates the utility of population pharmacokinetics in bioequivalence assessment. This novel population pharmacokinetic model provides new insights regarding the factors that may affect the pharmacokinetics of sulindac and the exisulind and sulindac sulfide metabolites in generally healthy subjects, which have implications for future chemoprevention trial design for this widely available agent.

We combine femtosecond polarization resolved VIS-pump IR-probe spectroscopy with DFT and TD-DFT calculations to identify and assign absorption bands to electronic transitions for corroles. These macrocycles and their corresponding metal complexes are receiving great attention because of their utility in many fields, while many of their spectroscopic features have not yet been fully described. Analysis of the perturbed free induction decay provides information about the bleaching signal at time zero and allows for determination of overlapping excited state and bleaching signal amplitudes. The S(0) → S(1) and S(0) → S(2) transitions in the Q-band of the hexacoordinated Al(tpfc)(py)(2) and Br(8)Al(tpfc)(py)(2) absorption spectra are explicitly assigned. Angles between these electronic transition dipole moments (tdms) with a single vibrational transition dipole moment of (53 ± 2)° and (34 ± 2)° when excited at 580 and 620 nm for hexacoordinated Al(tpfc)(py)(2) and (51 ± 2)° and (43 ± 2)° when excited at 590 and 640 nm for hexacoordinated Br(8)Al(tpfc)(py)(2) were determined. The relative angles between the two lowest electronic tdms are (90 ± 8)° and (94 ± 3)° for Al(tpfc)(py)(2) and Br(8)Al(tpfc)(py)(2), respectively. Angles are determined before time zero by polarization resolved perturbed free induction decay and after time zero by polarization resolved transients. Comparison of corrole's wave functions with those of porphine show that the reduced symmetry in the corrole molecules results in lifting of Q-band degeneracy and major reorientation of the electronic transition dipole moments within the molecular scaffold. This information is necessary in designing optimal corrole-based electron and energy transfer complexes.

Time-resolved electron paramagnetic resonance (TREPR) spectroscopy was used for studying photoinduced intramolecular electron transfer (ET) and energy transfer (EnT) processes in three mechanically interlocked molecules in which zinc(II)porphyrin (ZnP) and C60 fullerene moieties are arrayed around a central Cu(I) bisphenanthroline core used to assemble these donor–acceptor (D–A) systems. The specific molecules studied include a “long” (ZnP)2–Cu(I)(phen)2–C60 rotaxane as well as ZnP–Cu(I)(phen)2 and ZnP–Cu(I)(phen)2–C60 catenanes, embedded in different phases of nematic liquid crystal and frozen isotropic solvents. It was demonstrated that the routes and rates of the transfer processes in these supramolecules strongly depend on the characteristics of their microenvironment and the molecular entity which was selectively photoexcited. This is reflected by formation of distinct long-lived charge-separated species such as the radical ion pair (ZnP)2•+–Cu(I)(phen)2•– and the metal-to-ligand charge-separated sta...

The effect of the corrole macrocycle bromination on its photoexcited triplet state parameters was examined in a comparison study of brominated and nonbrominated Ga(III) 5,10,15-tris(pentafluorophenyl)corroles, employing X-band (9.5 GHz) time-resolved electron paramagnetic resonance (TREPR) spectroscopy. It is demonstrated that the spectrum of the brominated Ga-corrole is characterized by an opposite polarization pattern and a larger zero-field splitting (ZFS) parameter |D|, compared to nonbrominated Ga-corrole. With the assignment of a negative sign for the ZFS parameter D, the dominant intersystem crossing (ISC) pathways are evaluated. Spectral line shape analysis reveals that in the brominated Ga-corrole,the out-of-plane triplet sublevel is overpopulated (A(Z) > A(X), A(Y)), while in nonbrominated Ga-corrole, the in-plane triplet sublevels are preferentially populated (A(X), A(Y) ≫ A(Z)). The differences in the photophysical properties of the corroles are attributed to the heavy atom effect upon corrole skeleton bromination, which enhances the spin-orbit coupling strength in the brominated complex, thus affecting its ISC and ZFS parameters.

Novel mechanisms of the electron spin polarization were reported. Effect of spin-selective interactions within the photo-excited preexisting molecular dimers was utilized. Processes occurring within dimers and upon escape from the dimer cage were considered.

Photoinduced intramolecular electron-transfer (ET) and energy-transfer (EnT) processes in two rotaxanes, one containing both zinc porphyrin and C(60) fullerene moieties incorporated around the Cu(I) bisphenanthroline core [(ZnP)(2)-Cu(I)(phen)(2)-C(60)] and a second complex lacking the fullerene [(ZnP)(2)-Cu(I)(phen)(2)], were studied by time-resolved electron paramagnetic resonance (TREPR) spectroscopy at 9.5 GHz (X-band) combined with a selective photoexcitation of the rotaxane moieties. The experiments were carried out in isotropic toluene and ethanol and in anisotropic nematic liquid-crystal (E-7) media over a wide range of temperatures corresponding to the different states of the solvents. The TREPR results are compared with those obtained previously by optical methods in dichloromethane at room temperature. It is demonstrated that the efficiencies and pathways of the light-driven ET and EnT processes in both rotaxanes strongly depend on the properties of their microenvironment, resulting in the formation of distinct charge-separated states under different experimental conditions. The complementary results revealed by the optical and TREPR techniques are attributed to the relatively high conformational mobility of the mechanically interlocked rotaxane systems. Because of the solute-solvent interactions, the rotaxanes are able to change conformation in different microenvironments, which affects the parameters of the photoinduced processes occurring in these systems.

Three photosensitizers based on tris-(pentafluorophenyl)antimony corroles that differ in oxidation state and axial ligands, namely, (pyridine) Sb (III)-, (oxo) Sb (V)- and (difluoro) Sb (V) complexes, were studied by time-resolved electron paramagnetic resonance spectroscopy and laser flash photolysis. The magnetic and orientational parameters of the corroles oriented in a nematic liquid crystal as well as their triplet lifetimes in liquid toluene were determined and interpreted in terms of their structure and geometry. The negative zero-field splitting parameter D assigned to all studied corroles is explained by the asymmetric π-electron withdrawal effect caused by perfluorinated peripheral aryl groups, which force the triplet electron spins to align in head-to-tail configuration. The effect of the axial ligands on the photoexcited triplet state properties of the corroles is correlated with their different efficiency to perform photoassisted aerobic oxygenation of some organic molecules. This is explained by the dependence of the main parameters of the photoexcited complexes on the interaction between the central ion and corrole π-system. This interaction is strongly influenced by axial ligands coordination, affecting the macrocycle symmetry, planarity, and rigidity.

We compare the optical response of wurtzite and zinc blende GaP nanowire arrays for varying geometry of the nanowires. We measure reflectance spectra of the arrays and extract from these measurements the absorption in the nanowires. To support our experimental findings and to allow for more detailed investigations of the optical response of the nanowire arrays than possible in experiments, we perform electromagnetic modeling. This modeling highlights the validity of the extraction of the absorptance from reflectance spectra, as well as limitations of the extraction due to anti-reflection properties of the nanowires. In our combined experimental and theoretical study, we find for both zinc blende and wurtzite nanowires an absorption resonance that can be tuned into the ultraviolet by decreasing the diameter of the nanowires. This peak stops blue-shifting with decreasing nanowire diameter at a wavelength of approximately 330 nm for zinc blende GaP. In contrast, for the wurtzite GaP nanowires, the resonance continues blue-shifting at 310 nm for the smallest diameters we succeeded in fabricating. We interpret this as a difference in refractive index between wurtzite and zinc blende GaP in this wavelength region. These results open up for optical applications through resonant absorption in the visible and ultraviolet wavelength regions with both zinc blende and wurtzite GaP nanowire arrays. Notably, zinc blende and wurtzite GaP support resonant absorption deeper into the ultraviolet region than previously found for zinc blende and wurtzite InP and InAs.

The photoexcited triplet states of three 5,10, 15-tris(pentafluorophenyl)corroles (tpfc), hosting Sn(IV) and Al(III) in their core, namely, Sn(Cl)(tpfc), Al(pyr)2(tpfc) and Al(pyr)2(tpfc-Br8), were studied by time-resolved electron paramagnetic resonance (TREPR) spectroscopy in the nematic liquid crystal E7. Only two of these metallocorroles, namely, Sn(Cl)(tpfc) and Al(pyr)2(tpfc-Br8), exhibit TREPR spectra following pulsed laser excitation. This result is rationalized in terms of a very low quantum yield of triplet formation in Al(pyr)2(tpfc). Analysis of the spin polarized Q-band (34 GHz) EPR spectra of Sn(Cl)(tpfc) and Al(pyr)2(tpfc-Br8) provides detailed information on the magnetic and kinetic parameters of the triplet states as well as on the molecular ordering of the complexes in the liquid crystal. With the assignment of the zero-field splitting parameterD AX, AY, which is attributed to a large increase in the spin-orbit coupling strength arising from the peripheral bromine atoms on the corrole skeleton.

Light-driven multi-step intramolecular electron transfer in a rod-like triad, in which two of the three redox components are linked by three hydrogen bonds, was studied by time-resolved electron paramagnetic resonance (TREPR) and optical spectroscopies. One part of the molecule consists of a p-methoxyaniline primary electron donor (MeOAn) covalently linked to a 4-aminonaphthalene-1, 8-dicarboximide (6ANI) chromophoric electron acceptor (MeOAn-6ANI). The unsubstituted dicarboximide of 6ANI serves as one half of a hydrogen bonding receptor pair. The other half of the receptor pair consists of a melamine linked to a naphthalene-1,8:4,5-bis(dicarboximide) (NI) secondary electron acceptor (MEL-NI). TREPR spectroscopy is used to probe the electronic interaction between the radicals within the photogenerated, spin-correlated radical ion pair MeOAn +-6ANI/MEL-NI −. The results are compared to those obtained in earlier studies in which MeOAn-6ANI is covalently linked to NI through a 2,5-dimethylphenyl group (MeOAn-6ANI-Ph-NI). We show that the electronic coupling between the oxidized donor and reduced acceptor in the hydrogen-bonded radical ion pair MeOAn +-6ANI/MEL-NI − is very similar to that of MeOAn +-6ANI-Ph-NI −.

Time-resolved electron paramagnetic resonance (TREPR) spectroscopy was used to study two functionalized fullerenes consisting of a C60 moiety covalently linked to TEMPO radical via spacers of different length. Photoinduced electron spin polarization (ESP) reflecting a non-Boltzmann population within the energy levels of the spin system was observed in the electronic ground and excited states. Both fullerenes are characterized by a sign inversion of their TREPR spectra. A new mechanism of ESP generation was suggested to explain the experimental results. This mechanism, termed as the reversed quartet mechanism (RQM), includes the intersystem crossing process, which generates ESP in the excited trip-doublet and trip-quartet (2T1 and 4T1) states. This ISC is accompanied by ESP transfer to the ground state (2S0) by either electron-transfer reaction (in our case via charge transfer state, 2CT, i.e., 2T1 → 2CT → 2S0) or internal conversion, 2T1 → 2S0.

Light-induced spin-polarized transient EPR spectra are reported for several water-soluble copper porphyrins. The spectra are assigned to the doublet ground state, with emissive spin polarization resulting from photoexcitation and subsequent electronic relaxation. In contrast to other systems for which polarization of a doublet ground state has been observed, the exchange interactions in the copper porphyrins are strong and the geometry is fixed. It is proposed that intersystem crossing from the photoexcited trip-doublet to the trip-quartet state can lead to net polarization of the spin system and that this polarization is maintained during electronic decay, possibly via charge-transfer and exciplex states. The intensity of the observed spin polarization is essentially independent of the molecular orientation in the external field, but is strongly dependent on the nature of the charged peripheral groups. Possible reasons for this behavior are discussed.

Electron paramagnetic resonance (EPR) spectroscopy was used to study the interactions between stable free radicals and gold nanoparticles. The nitroxyl free radicals used were TEMPO, TEMPAMINE, and TEMPONE. Two sizes of Au particles, 15 and 2.5 nm in diameter, were synthesized to investigate the interactions with the metallic particles. We find that the EPR signal is reduced upon adsorption of the radicals onto the 15 nm Au particle surface. Despite the strong adsorption of TEMPAMINE on the particles, the signal intensity recovers upon the introduction of a high concentration of ethanolamine to the solution. The signal reduction was proportional to the concentration of Au particles, and the signal totally disappeared at high concentrations of Au particles. Possible explanations of the signal reduction are discussed in this Article. We propose that the reduction in signal intensity arises from exchange interactions between the unpaired electrons of the adsorbed radicals and conduction-band electrons of the metallic particles. In addition, in the presence of oxygen, the adsorbed TEMPAMINE radicals are catalytically oxidized to the carbonyl derivative, TEMPONE. A mechanism for this unexpected catalytic reaction is proposed.

An array of fluorogenic probes is able to discriminate between nerve agents, sarin, soman, tabun, VX and their mimics, in water or organic solvent, by qualitative fluorescence patterns and quantitative multivariate analysis, thus making the system suitable for the inthe- field detection of traces of chemical warfare agents as well as to differentiate between the real nerve agents and other related compounds., Ministerio de Economía y Competitividad, Spain (Project CTQ2012- 31611), Junta de Castilla y León, Consejería de Educación y Cultura y Fondo Social Europeo (Project BU246A12-1), the European Commission, Seventh Framework Programme (Project SNIFFER FP7-SEC-2012-312411) and the Swedish Ministry of Defence (no. A403913)

Photoinduced intramolecular electron transfer was studied by time-resolved electron paramagnetic resonance spectroscopy in two photosynthetic model systems oriented in a nematic liquid crystal. The donor−acceptor assemblies consisted of differently substituted zinc porphyrins covalently linked to a quinone with different spacers, i.e., triptycyl and cyclohexylene. The orientation of the guest molecules with respect to the director of the liquid crystal was determined by line shape analysis of their triplet spectra and by molecular modeling. It is demonstrated that the polarized pattern of the radical pair spectrum is sensitive mainly to the spacer structure, but to some extent also to the peripheral substituents.

The photoexcited triplet state of the two new porphyrin isomers, octaethylhemiporphycene (OEHPC) and octaethylcorrphycene (OECPC), embedded in isotropic (toluene) and an anisotropic liquid crystal matrices was studied by time-resolved electron paramagnetic resonance (EPR) spectroscopy in the temperature range of 150–300 K. The magnetic, kinetic and orientation parameters were determined and interpreted in terms of structure, symmetry and dynamic. Analysis of the results suggests that at T ⩾250 K, the orientation and packing of the chromophores result from a discrete solid-like jumps mechanism, which is more efficient for OECPC. This difference is rationalized in terms of differences in the symmetry of the two chromophores.

Objective Development of a method for semiautomated preparation of purified, representative and conventionally stained monolayer smears from bronchial secretions suitable for subjective and/or automated cytodiagnosis. Study design Bronchial secretions from 50 patients with and 48 without carcinoma cells of different types were collected in Saccomanno's fixative. After routine pick-and-smear processing, residual material was subjected to a mucolytic agent (ammonium thioglycolate). Separation of cells was performed by differential centrifugation through aqueous sucrose. The pellet was automatically processed by the AutoCyte PREP system. Results Slides revealed well-preserved, slightly shrunken, homogeneously distributed cells devoid of mucus, cellular debris and bacteria in monolayer arrangement nearly without overlap. Granulocytes were eliminated to a large extent. Comparison with pick-and-smear specimens showed more tumor cells per square centimeter of slide surface in 100% of AutoCyte PREP slides. The number of tumor cells per AutoCyte PREP slide was higher in 46% and lower in 54%. Selecting slides at random and requiring at least 10 abnormal cells to establish a tumor diagnosis were achieved in 82.7% if only one, in 88.0% if two and 94.0% if seven or eight AutoCyte PREP slides were investigated. Conclusion The semiautomated method yielded conventionally stained, purified monolayer smears from bronchial secretions with cellular morphology suitable for evaluation by cytologists and screening machines. Representativity of AutoCyte PREP monolayers was superior to that of pick-and-smear slides.

We report on an unusual intramolecular electron transfer following the photoexcitation of the ground, charge separated, state of the zwitterionic compound, tetraphenylhexaazaanthracene, which results in a neutral biradical product. The reaction, studied by time-resolved electron paramagnetic resonance (TREPR) spectroscopy, could be carried out only when liquid crystals were used as the orienting solvents. On the basis of the analysis of the magnetic, kinetic, and polarization parameters of the TREPR spectra, the radical pair genesis is attributed to an intramolecular electron transfer from the singlet excited state.

Peripheral axotomy of motoneurons triggers Wallerian degeneration of injured axons distal to the lesion, followed by axon regeneration. Centrally, axotomy induces loss of synapses (synaptic stripping) from the surface of lesioned motoneurons in the spinal cord. At the lesion site, reactive Schwann cells provide trophic support and guidance for outgrowing axons. The mechanisms of synaptic stripping remain elusive, but reactive astrocytes and microglia appear to be important in this process. We studied axonal regeneration and synaptic stripping of motoneurons after a sciatic nerve lesion in mice lacking the intermediate filament (nanofilament) proteins glial fibrillary acidic protein (GFAP) and vimentin, which are upregulated in reactive astrocytes and Schwann cells. Seven days after sciatic nerve transection, ultrastructural analysis of synaptic density on the somata of injured motoneurons revealed more remaining boutons covering injured somata in GFAP(-/-)Vim(-/-) mice. After sciatic nerve crush in GFAP(-/-)Vim(-/-) mice, the fraction of reinnervated motor endplates on muscle fibers of the gastrocnemius muscle was reduced 13 days after the injury, and axonal regeneration and functional recovery were delayed but complete. Thus, the absence of GFAP and vimentin in glial cells does not seem to affect the outcome after peripheral motoneuron injury but may have an important effect on the response dynamics.

We report on intramolecular electron and/or energy transfer (IET and IEnT), in two photoexcited electrostatically bound dimers: (1) zinc(II) tetrakis(4-sulfonatophenyl)porphyrin and magnesium(II) tetrakis(4-N,N,N-trimethylanilinium)porphyrin, [ZnTSPP−MgTTAP]; and (2) zinc(II) tetrakis(4-N,N,N-trimethylanilinium)porphyrin and magnesium(II) tetrakis(4-sulfonatophenyl)porphyrin, [ZnTTAP−MgTSPP]. The photochemical properties of both dimers, dissolved in dimethylsulfoxide−glycerol (DMSO−Glyc, 140 K), were investigated by continuous wave time-resolved electron paramagnetic resonance (CW-TREPR) spectroscopy. It is demonstrated that by changing the peripheral substitution of the particular metalloporphyrin in the dimer, an IET route, parallel to the singlet IEnT, can be triggered. Thus, singlet IEnT from the Zn to the Mg constituent is the only process in [ZnTSPP−MgTTAP], while IET to produce a charge-separated state, [ZnTTAP•+−MgTSPP•-] accompanies the IEnT in [ZnTTAP−MgTSPP].

We combined femtosecond (fs) VIS pump-IR probe spectroscopy with fs VIS pump-supercontinuum probe spectroscopy to characterize the photoreaction of the hexacoordinated Al(tpfc-Br8)(py)2 in a comprehensive way. Upon fs excitation at ∼400 nm in the Soret band, the excitation energy relaxes with a time constant of (250 ± 80) fs to the S2 and S1 electronic excited states. This is evident from the rise time of the stimulated emission signal in the visible spectral range. On the same time scale, narrowing of broad infrared signals in the C=C stretching region around 1500 cm(-1) is observed. Energy redistribution processes are visible in the vibrational and electronic dynamics with time constants between ∼2 ps and ∼20 ps. Triplet formation is detected with a time constant of (95 ± 3) ps. This is tracked by the complete loss of stimulated emission. Electronic transition of the emerging triplet absorption band overlaps considerably with the singlet excited state absorption. In contrast, two well separated vibrational marker bands for triplet formation were identified at 1477 cm(-1) and at 1508 cm(-1). These marker bands allow a precise identification of triplet dynamics in corrole systems.

Light-driven intramolecular electron transfer (ET) and energy transfer (EnT) processes in two rotaxanes, the first containing two free base porphyrins and C(60) fullerene moieties incorporated around a Cu(I)bisphenanthroline core ((H(2)P)(2)-Cu(I)(phen)(2)-C(60)) and a second lacking the fullerene moiety ((H(2)P)(2)-Cu(I)(phen)(2)), were studied by X-band (9.5 GHz) time-resolved electron paramagnetic resonance (TREPR) spectroscopy. The experiments were performed in frozen toluene and ethanol and different phases of the nematic liquid crystal (E-7). It is demonstrated that the ET and EnT processes in the (H(2)P)(2)-Cu(I)(phen)(2)-C(60) rotaxane in different media result in the formation of the same charge-separated state, namely (H(2)P)(2)(•+)-Cu(I)(phen)(2)(•-)-C(60), while photoexcitation of the (H(2)P)(2)-Cu(I)(phen)(2) rotaxane does not induce noticeable transfer processes in these matrices. The results are discussed in terms of the high conformational mobility of the rotaxanes, which enables changes in the molecular topography and resultant modification of the rates and routes of photoinduced processes occurring in these systems. The parameters of the transfer processes are compared with those obtained in our previous study of (ZnP)(2)-Cu(I)(phen)(2)-C(60) and (ZnP)(2)-Cu(I)(phen)(2) rotaxanes under the same experimental conditions.

Photoexcited states of three Rh(III) 5,10,15-tris(pentafluorophenyl)corroles coordinated by different axial ligands; namely, triphenylphosphine P(C(6)H(5))(3) group (1), pyridine C(6)H(5)N group (2), and two pyridine groups (3) were studied by X- and Q-band time-resolved electron paramagnetic resonance (TREPR) in frozen toluene and liquid crystal E-7. Transient mutations were utilized to identify multiplicity of the detected paramagnetic species. The spectra of 1 and 2 were assigned to triplet ((3)pipi*) states, while contributions of triplet ((3)dd and charge transfer (3)CT) and quintet ((5)dd) states were revealed in the spectrum of 3. The results are interpreted in terms of a peculiar nature of transition metal complexes with the unfilled d-shell, where close lying electronic states of different multiplicities may be mixed through configurational, spin-orbit, and vibronic coupling. From the EPR spectra, the spin-orbit coupling constant was estimated to be about 25 cm(-1). It is shown that different axial ligation of complexes shifts the relative energy of the excited states and, consequently, leads to population of different states. Plausible explanations of the effects governing unusual spectral and dynamic parameters of the photoexcited Rh corrole complexes are presented.

Due to its potential as an antibiotic target, E. coli peptide deformylase (PDF Ec ) serves as a model enzyme system for inhibitor design. While investigating the structural–functional and inhibitory features of this enzyme, we unexpectedly discovered that 2-amino-5-mercapto-1,3,4-thiadiazole (AMT) served as a slow-binding inhibitor of PDF Ec when the above compound was dissolved only in dimethylformamide (DMF), but not in any other solvent, and allowed to age. The time dependent inhibitory potency of the DMF-dissolved AMT was correlated with the broadening of the inhibitor's 295 nm spectral band toward the visible region, concomitant with the increase in the mass of the parent compound by about 2-fold. These data led to the suggestion that DMF facilitated the slow dimerization of AMT (via the formation of a disulfide bond), and that the dimeric form of AMT served as an inhibitor for PDF Ec . The latter is not caused by the simple oxidation of sulfhydryl groups by oxidizing agents such as H 2 O 2 . Newly synthesized dimeric/dithiolated form of AMT (“bis-AMT”) exhibited similar spectral and inhibitory features as given by the parent compound when incubated with DMF. The computer graphic modeling data revealed that bis-AMT could be reliably accommodated within the active site pocket of PDF Ec , and the above enzyme–ligand interaction involves coordination with the enzyme resident Ni 2+ cofactor. The mechanism of the DMF-assisted activation of AMT (generating bis-AMT), the overall microscopic pathway for the slow-binding inhibition of PDF Ec by bis-AMT, and the potential of bis-AMT to serve as a new class of antibiotic agent are presented.

We investigated the binding of a naturally occurring antibiotic, actinonin, to the Ni(2+)-reconstituted recombinant form of Escherichia coli peptide deformylase (PDF(Ec)) via isothermal titration microcalorimetry. The binding data conformed to both exothermic and endothermic phases with magnitudes of DeltaG degrees , DeltaH degrees , and TDeltaS degrees being equal to -12, -2.7, and 9.3 kcal/mol and -8.7, 3.9, and 12.6 kcal/mol, respectively. Evidently, although both phases are dominated by favorable entropic changes, the exothermic phase has about 6.7 kcal/mol enthalpic advantage over the endothermic phase. We observed that the removal of bound Ni(2+) from PDF(Ec) abolished the exothermic phase without affecting the endothermic phase, but it was regained upon addition of Zn(2+). In conjunction with metal analysis data, we propose that the recombinant form of PDF(Ec) is expressed in two stable conformational states that yield markedly distinct ITC profiles (i.e., exothermic versus endothermic) upon interaction with actinonin. The existence of two conformational states of PDF(Ec) is further supported by the observation of two distinct and independent transitions during the thermal unfolding of the enzyme. In addition, the thermodynamic data reveal that the formation of the PDF(Ec)-actinonin complex results in the transfer of one H(+) from the enzyme phase to the bulk solvent at pH 6.3. Both exothermic and endothermic phases produce highly negative DeltaC(p) degrees values, but there is no apparent enthalpy-entropy compensation effect upon formation of the PDF(Ec)-actinonin complex. In view of the known structural features of the enzyme, arguments are presented that the alternative conformational states of PDF(Ec) are modulated by the metal ligation at the enzyme site.

The photoexcited triplet state of the thiouredopyrenetrisulfonate (TUPS) covalently linked to (1) α-acetyl lysine (3*TUPS-L) and (2) lysine residue 122 of azurin (3*TUPS-A) were studied by time-resolved EPR spectroscopy. The triplet spectra of 3*TUPS-L and 3*TUPS-A dissolved in water−glycerol (1:1) mixture, at freezing temperatures, show different temperature dependence. While in the case of 3*TUPS-L, no apparent dynamic effects were noticed, 3*TUPS-A exhibits a strong effect at 230 K. The dynamic effects were treated by line shape analysis with the discrete jumps model, suggesting that the environment in which 3*TUPS-A is embedded is not frozen, allowing for fast molecular motion with a correlation time of ∼1.8 × 10-10 s. These results are explained by the unique properties of the protein-bound water layers, which are kept in the liquid state even at relatively low temperatures, where the bulk water is frozen.

The structural data of tumorigenic carbonic anhydrase (CA) XII revealed that the enzyme surface opposite to the active site pocket was negatively charged, and thus it had potential to interact with the positively charged surfaces. We investigated the influence of cationic CdTe quantum dots on the catalytic and ligand binding properties of the enzyme. Although cationic quantum dots interacted with CAXII (with aKdvalue of 2.1μM), they did not impair the enzyme's catalytic activity, suggesting that the accessibility of the enzyme's active site remained unaffected by the above interaction. When CAXII bound dansylamide (serving as a fluorescence probe as well as a potent inhibitor of the enzyme) was titrated with cationic quantum dots, the fluorescence spectral profiles revealed a marked transfer of the excited state energy between the above species. However, the binding of quantum dots to CAXII weakened the affinity of dansylamide for the enzyme, and thus obviated the inhibitory feature of the ligand. Since the quantum dots and dansylamide are bound at the opposite sides of CAXII, their influence must be mediated via changes in the protein conformation at a distal region as observed with allosteric enzymes. The mechanistic insights gained from these studies may lead toward developing diagnostic protocols for tumorigenic CAXII.

Ternary nanowires (NWs) often exhibit varying material composition along the NW growth axis because of different diffusion properties of the precursor molecules. This constitutes a problem for optoelectronic devices for which a homogeneous material composition is most often of importance. Especially, ternary GaInP NWs grown under a constant Ga-In precursor ratio typically show inhomogeneous material composition along the length of the NW due to the complexity of low temperature precursor pyrolysis and relative rates of growth species from gas phase diffusion and surface diffusion that contribute to synthesis of particle-assisted growth. Here, we present the results of a method to overcome this challenge by in situ tuning of the trimethylindium molar fraction during growth of ternary Zn-doped GaInP NWs. The NW material compositions were determined by use of x-ray diffraction, scanning transmission electron microscopy and energy dispersive x-ray spectroscopy and the optical properties by photoluminescence spectroscopy.

In the current understanding of exocytosis at the nerve terminal, the C2 domain of synaptotagmin (C2A) is presumed to bind Ca2+ and the membrane in a stepwise fashion: cation then membrane as cation increases the affinity of protein for membrane. Fluorescence spectroscopy data were gathered over a variety of lipid and Ca2+ concentrations, enabling the rigorous application of microscopic binding models derived from partition functions to differentiate between Ca2+ and phosphatidylserine contributions to binding. The data presented here are in variance with previously published models, which were based on the Hill approximation. Rather, the data are consistent with two forms of cooperativity that modulate the responsiveness of C2A: in Ca2+ binding to a network of three cation sites and in interaction with the membrane surface. We suggest synaptotagmin I C2A is preassociated with the synaptic vesicle membrane or nerve terminal. In this state, upon Ca2+ influx the protein will bind the three Ca2+ ions immediately and with high cooperativity. Thus, membrane association creates a high-affinity Ca2+ switch that is the basis for the role of synaptotagmin I in Ca2+-regulated exocytosis. Based on this model, we discuss the implications of protein-induced phosphatidylserine demixing to the exocytotic process.

Three corroles, which differ by their cavity's core, namely, diamagnetic free-base tris(pentafluorophenyl)corrole and its gallium(III) complex and the paramagnetic oxo-chromium(V) complex, were studied by steady-state and time-resolved electron paramagnetic resonance (EPR) spectroscopy. The magnetic and orientational parameters of the corroles, oriented in a nematic liquid crystal, were determined and interpreted in terms of their structure, geometry, and excited states spin dynamics. It was shown that both diamagnetic corroles, photoexcited to their triplet states, exhibit similar EPR line shapes, which is characterized by a negative zero-field splitting parameter, D, whose origin is due to molecular "stretching". Photoexcited Cr(V)O-corrole exhibits polarized ground-state EPR spectrum in emission mode. This polarization stems from the sequence of photophysical and photochemical reactions, involving the formation of the trip-quartet/trip-doublet composite states and their selective quenching via a charge transfer state.

We report on the influence of hydrogen bromide (HBr) in situ etching on the growth of InP, GaP and GaAs nanowires. We find that HBr can be used to impede undesired radial growth during axial growth for all three material systems. The use of HBr opens a window for optimizing the growth parameters with respect to the materials' quality rather than only their morphology. Transmission electron microscopy (TEM) characterization reveals a partial transition from a wurtzite crystal structure to a zincblende upon the use of HBr during growth. For InP, defect-related luminescence due to parasitic radial growth is removed by use of HBr. For GaP, the etching with HBr reduced the defect-related luminescence, but no change in peak emission energy was observed. For GaAs, the HBr etching resulted in a shift to lower photon emission energies due to a shift in the crystal structure, which reduced the wurtzite segments.

Light intensities that limit electron flow induce rapid degradation of the photosystem II (PSII) reaction center D1 protein. The mechanism of this phenomenon is not known. We propose that at low excitation rates back electron flow and charge recombination between the Q B •− or Q A •− semiquinone acceptors and the oxidized S 2,3 states of the PSII donor side may cause oxidative damage via generation of active oxygen species. Therefore, damage per photochemical event should increase with decreasing rates of PSII excitation. To test this hypothesis, the effect of the dark interval between single turnover flashes on the inactivation of water oxidation, charge separation and recombination, and the degradation of D1 protein were determined in spinach thylakoids. PSII inactivation per flash increases as the dark interval between the flashes increases, and a plateau is reached at dark intervals, allowing complete charge recombination of the Q B •− /S 2,3 or Q A •− /S 2 states (about 200 and 40 s, respectively). At these excitation rates: ( i ) 0.7% and 0.4% of PSII is inactivated and 0.4% and 0.2% of the D1 protein is degraded per flash, respectively, and ( ii ) the damage per flash is about 2 orders of magnitude higher than that induced by equal amount of energy delivered by excess continuous light. No PSII damage occurs if flashes are given in anaerobic conditions. These results demonstrate that charge recombination in active PSII is promoted by low rates of excitation and may account for a the high quantum efficiency of the rapid turnover of the D1 protein induced by limiting light.

Light-driven electron transfer (ET) and energy transfer (EnT) in a self-assembled via axial coordination Zn-porphyrin-pyridylfullerene (ZnP-PyrF) complex were studied by time-resolved electron paramagnetic resonance (TREPR) spectroscopy at 9.5 GHz (X-band) and 95 GHz (W-band). The studies over a wide temperature range were carried out in media of different polarity, including isotropic toluene and tetrahydrofuran (THF), and anisotropic nematic liquid crystals (LCs), E-7 and ZLI-4389. At low temperatures (frozen matrices), photoexcitation of the ZnP donor results mainly in singlet-singlet EnT to the pyridine-appended fullerene acceptor. In fluid phases ET is the dominant process. Specifically, in isotropic solvents the generated radical pairs (RPs) are long-lived, with lifetimes exceeding that observed for covalently linked donor-acceptor systems. It is concluded that in liquid phases of both polar and nonpolar solvents the separation of the tightly bound complex into the more loosely bound structure slows down the back ET (BET) process. Photoexcitation of the donor in fluid phases of LCs does not result in the creation of the long-lived RPs, since the ordered LC matrix hinders the separation of the complex constituents. As a result, fast intramolecular BET takes place in the tightly bound complex. Contrarily to the behavior of covalently linked donor-acceptor systems in different LCs, the polarity of the LC matrix affects the ET process. Moreover, in contrast to covalently linked D-s-A systems, utilization of LCs for the coordinatively linked D-s-A complexes does not reduce the ET rates significantly.