1. Structural analysis of the GPI glycan
- Author
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Kouichi Funato, Manuel Muñiz, Miyako Nakano, Kouta Okazaki, Atsuko Ikeda, Alejandro Cortes-Gomez, Auxiliadora Aguilera-Romero, Susana Sabido-Bozo, Sofia Rodriguez-Gallardo, Sergio López, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), European Commission, Japan Society for the Promotion of Science, [Nakano,M, Okazaki,K, Ikeda,A, Funato,K] Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan. [Sabido-Bozo,S, Aguilera-Romero,A, Rodriguez-Gallardo,S, Cortes-Gomez,A, Lopez,S, Muñiz,M] Facultad de Biologia, Departamento de Biologia Celular, Hospital Universitario Virgen del Rocio/CSIC/Universidad de Sevilla, Universidad de Sevilla e Instituto de Biomedicina de Sevilla (IBiS), Sevilla, Spain., MM. BFU2017-89700-P. FEDER/Ministerio de Ciencia, Innovación y Universidades—Agencia Estatal de Investigación. http://www.aei.gob.es/. MN and KF. JP19H02922. Japan Society for the Promotion of Science. https://www.jsps.go.jp/english/. The funders had and will not have a role in study design, data collection and analysis, decision to publish, or preparation of the manuscript., Universidad de Sevilla. Departamento de Biología Celular, Ministerio de Ciencia, Innovación y Universidades (MICINN). España, and European Commission (EC). Fondo Europeo de Desarrollo Regional (FEDER)
- Subjects
Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Glycoproteins::Membrane Glycoproteins::GPI-Linked Proteins [Medical Subject Headings] ,Cell Membranes ,Cell ,Electrophoretic techniques ,Endoplasmic Reticulum ,Biochemistry ,Phenomena and Processes::Digestive System and Oral Physiological Phenomena::Digestive System Physiological Phenomena::Digestive System Processes::Digestion [Medical Subject Headings] ,Green fluorescent protein ,Lab Protocol ,Tandem Mass Spectrometry ,Anatomy::Cells::Cellular Structures::Intracellular Space::Cytoplasm::Cytoplasmic Structures::Organelles::Endoplasmic Reticulum [Medical Subject Headings] ,Trypsin ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Chemistry Techniques, Analytical::Electrophoresis [Medical Subject Headings] ,Organisms::Eukaryota::Fungi::Ascomycota::Saccharomycetales::Saccharomyces::Saccharomyces cerevisiae [Medical Subject Headings] ,Staining ,Secretory Pathway ,Multidisciplinary ,biology ,Chemistry ,Phenomena and Processes::Chemical Phenomena::Biochemical Phenomena::Biochemical Processes::Protein Modification, Translational::Protein Processing, Post-Translational [Medical Subject Headings] ,Eukaryota ,Proteases ,Specimen preparation and treatment ,Enzyme structure ,Precipitation Techniques ,Enzymes ,Cell biology ,medicine.anatomical_structure ,Chemicals and Drugs::Carbohydrates::Glycoconjugates::Glycolipids::Glycosylphosphatidylinositols [Medical Subject Headings] ,Cell Processes ,Digestión ,Medicine ,Digestion ,lipids (amino acids, peptides, and proteins) ,Cellular Structures and Organelles ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Chemistry Techniques, Analytical::Mass Spectrometry::Tandem Mass Spectrometry [Medical Subject Headings] ,Electrophoresis ,Glycan ,Immunoprecipitation ,Science ,Saccharomyces cerevisiae ,Chemicals and Drugs::Enzymes and Coenzymes::Enzymes::Hydrolases::Peptide Hydrolases::Endopeptidases::Serine Endopeptidases::Trypsin [Medical Subject Headings] ,Research and Analysis Methods ,GPI-Linked Proteins ,Retículo endoplásmico ,Coomassie Blue staining ,Polysaccharides ,medicine ,Electroforesis ,Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Peptides [Medical Subject Headings] ,Phenomena and Processes::Chemical Phenomena::Biochemical Phenomena::Biochemical Processes::Biosynthetic Pathways [Medical Subject Headings] ,Mass spectrometry ,Endoplasmic reticulum ,Glicosilfosfatidilinositoles ,Organisms ,Fungi ,Biology and Life Sciences ,Membrane Proteins ,Proteins ,Péptidos ,Cell Biology ,Gel electrophoresis ,Yeast ,Tripsina ,carbohydrates (lipids) ,Glycosylphosphatidylinositol ,Membrane protein ,Electrophoretic staining ,Enzyme Structure ,Enzymology ,biology.protein ,Espectrometría de masas ,Serine Proteases ,Peptides ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Chemistry Techniques, Analytical::Mass Spectrometry [Medical Subject Headings] - Abstract
Glycosylphosphatidylinositol (GPI) anchoring of proteins is an essential post-translational modification in all eukaryotes that occurs at the endoplasmic reticulum (ER) and serves to deliver GPI-anchored proteins (GPI-APs) to the cell surface where they play a wide variety of vital physiological roles. This paper describes a specialized method for purification and structural analysis of the GPI glycan of individual GPI-APs in yeast. The protocol involves the expression of a specific GPI-AP tagged with GFP, enzymatic release from the cellular membrane fraction, immunopurification, separation by electrophoresis and analysis of the peptides bearing GPI glycans by mass spectrometry after trypsin digestion. We used specifically this protocol to address the structural remodeling that undergoes the GPI glycan of a specific GPI-AP during its transport to the cell surface. This method can be also applied to investigate the GPI-AP biosynthetic pathway and to directly confirm predicted GPI-anchoring of individual proteins., MM. BFU2017-89700-P. FEDER/Ministerio de Ciencia, Innovación y Universidades—Agencia Estatal de Investigación. http://www.aei.gob.es/. MN and KF. JP19H02922. Japan Society for the Promotion of Science. https://www.jsps.go.jp/english/.
- Published
- 2021