964 results on '"Jan G"'
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2. Correction to '40 Years of Duocarmycins: A Graphical Structure/Function Review of Their Chemical Evolution, from SAR to Prodrugs and ADCs'
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Jan G. Felber and Oliver Thorn-Seshold
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Chemistry ,QD1-999 - Published
- 2023
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3. Nanoantennas Inversely Designed to Couple Free Space and a Metal–Insulator–Metal Waveguide
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Yeming Han, Yu Lin, Wei Ma, Jan G. Korvink, Huigao Duan, and Yongbo Deng
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nanoantenna ,topology optimization ,metal–insulator–metal waveguide ,surface plasmon ,Chemistry ,QD1-999 - Abstract
The metal–insulator–metal (MIM) waveguide, which can directly couple free space photons, acts as an important interface between conventional optics and subwavelength photoelectrons. The reason for the difficulty of this optical coupling is the mismatch between the large wave vector of the MIM plasmon mode and photons. With the increase in the wave vector, there is an increase in the field and Ohmic losses of the metal layer, and the strength of the MIM mode decreases accordingly. To solve those problems, this paper reports on inversely designed nanoantennas that can couple the free space and MIM waveguide and efficiently excite the MIM plasmon modes at multiple wavelengths and under oblique angles. This was achieved by implementing an inverse design procedure using a topology optimization approach. Simulation analysis shows that the coupling efficiency is enhanced 9.47-fold by the nanoantenna at the incident wavelength of 1338 nm. The topology optimization problem of the nanoantennas was analyzed by using a continuous adjoint method. The nanoantennas can be inversely designed with decreased dependence on the wavelength and oblique angle of the incident waves. A nanostructured interface on the subwavelength scale can be configured in order to control the refraction of a photonic wave, where the periodic unit of the interface is composed of two inversely designed nanoantennas that are decoupled and connected by an MIM waveguide.
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- 2021
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4. Machine Learning-Based Identification of the Strongest Predictive Variables of Winning and Losing in Belgian Professional Soccer
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Youri Geurkink, Jan Boone, Steven Verstockt, and Jan G. Bourgois
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association football ,performance ,performance analysis ,KPI ,game result ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This study aimed to identify the strongest predictive variables of winning and losing in the highest Belgian soccer division. A predictive machine learning model based on a broad range of variables (n = 100) was constructed, using a dataset consisting of 576 games. To avoid multicollinearity and reduce dimensionality, Variance Inflation Factor (threshold of 5) and BorutaShap were respectively applied. A total of 13 variables remained and were used to predict winning or losing using Extreme Gradient Boosting. TreeExplainer was applied to determine feature importance on a global and local level. The model showed an accuracy of 89.6% ± 3.1% (precision: 88.9%; recall: 90.1%, f1-score: 89.5%), correctly classifying 516 out of 576 games. Shots on target from the attacking penalty box showed to be the best predictor. Several physical indicators are amongst the best predictors, as well as contextual variables such as ELO -ratings, added transfers value of the benched players and match location. The results show the added value of the inclusion of a broad spectrum of variables when predicting and evaluating game outcomes. Similar modelling approaches can be used by clubs to identify the strongest predictive variables for their leagues, and evaluate and improve their current quantitative analyses.
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- 2021
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5. Reform of Chemical Education in Holland.
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Hondebrink, Jan G.
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Some aspects of the reform of chemical education in the Netherlands are presented. These aspects include the reason for the reform and the results of the effort. Examples regarding the way entropy is treated and the treatment of quantitative chemical problems are given. (Author)
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- 1981
6. The importance and status of the micronutrient selenium in South Africa: a review
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Jan G. Myburgh, Philiswa N. Nomngongo, Nwabisa Takata, and Angelique Botha
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chemistry.chemical_classification ,Environmental Engineering ,media_common.quotation_subject ,Glutathione peroxidase ,chemistry.chemical_element ,General Medicine ,Biology ,Micronutrient ,Speciation ,chemistry ,Geochemistry and Petrology ,Environmental chemistry ,Soil water ,Acid deposition ,Environmental Chemistry ,Selenium ,General Environmental Science ,Water Science and Technology ,media_common - Abstract
Selenium (Se) is a vital micronutrient with widespread biological action but leads to toxicity when taken in excessive amounts. The biological benefits of Se are mainly derived from its presence in active sites of selenoproteins such as glutathione peroxidase (GPx). An enzyme whose role is to protect tissues against oxidative stress by catalysing the reduction of peroxidase responsible for various forms of cellular damage. The benefits of Se can be harvested when proper regulations of its intake are used. In South Africa, Se distribution in people's diets and animals are low with socio-economic factors and heterogeneous spread of Se in soil throughout the country playing a significant role. The possible causes of low Se in soils may be influenced by underlying geological material, climatic conditions, and anthropogenic activities. Sedimentary rock formations show higher Se concentrations compared to igneous and metamorphic rock formations. Higher Se concentrations in soils dominates in humid and sub-humid areas of South Africa. Furthermore, atmospheric acid deposition dramatically influences the availability of Se to plants. The studies reviewed in this article have shown that atomic absorption spectroscopy (AAS) is the most utilised analytical technique for total Se concentration determination in environmental samples and there is a lack of speciation data for Se concentrations. Shortcomings in Se studies have been identified, and the future research directions of Se in South Africa have been discussed.
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- 2021
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7. Renal microvascular endothelial cell responses in sepsis-induced acute kidney injury
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Grietje Molema, Jan G. Zijlstra, Matijs van Meurs, and Jan A. A. M. Kamps
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Vascular Endothelial Growth Factor A ,GROWTH-FACTOR ,Pathology ,medicine.medical_specialty ,MULTIPLE-ORGAN DYSFUNCTION ,VON-WILLEBRAND-FACTOR ,NF-KAPPA-B ,E-SELECTIN ,Vascular permeability ,Kidney ,FACTOR PATHWAY INHIBITOR ,Glycocalyx ,Sepsis ,chemistry.chemical_compound ,PERITUBULAR CAPILLARY DYSFUNCTION ,medicine ,Animals ,Humans ,NITRIC-OXIDE SYNTHASE ,urogenital system ,Cell adhesion molecule ,business.industry ,ACTIVATED PROTEIN-KINASE ,SEPTIC SHOCK ,Acute kidney injury ,Endothelial Cells ,Acute Kidney Injury ,medicine.disease ,Vascular endothelial growth factor ,Endothelial stem cell ,Disease Models, Animal ,medicine.anatomical_structure ,chemistry ,Nephrology ,business - Abstract
Endothelial cells in the kidney microvasculature have an intrinsic molecular and phenotypic heterogeneity and respond to sepsis-induced acute kidney injury conditions in a segment-specific manner. This Review discusses the roles of these cells and the molecular systems that control endothelial functions in the development of sepsis-induced acute kidney injury. Microvascular endothelial cells in the kidney have been a neglected cell type in sepsis-induced acute kidney injury (sepsis-AKI) research; yet, they offer tremendous potential as pharmacological targets. As endothelial cells in distinct cortical microvascular segments are highly heterogeneous, this Review focuses on endothelial cells in their anatomical niche. In animal models of sepsis-AKI, reduced glomerular blood flow has been attributed to inhibition of endothelial nitric oxide synthase activation in arterioles and glomeruli, whereas decreased cortex peritubular capillary perfusion is associated with epithelial redox stress. Elevated systemic levels of vascular endothelial growth factor, reduced levels of circulating sphingosine 1-phosphate and loss of components of the glycocalyx from glomerular endothelial cells lead to increased microvascular permeability. Although coagulation disbalance occurs in all microvascular segments, the molecules involved differ between segments. Induction of the expression of adhesion molecules and leukocyte recruitment also occurs in a heterogeneous manner. Evidence of similar endothelial cell responses has been found in kidney and blood samples from patients with sepsis. Comprehensive studies are needed to investigate the relationships between segment-specific changes in the microvasculature and kidney function loss in sepsis-AKI. The application of omics technologies to kidney tissues from animals and patients will be key in identifying these relationships and in developing novel therapeutics for sepsis.
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- 2021
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8. A comparison of calcium and phosphorus in components of fertile and size-matched unbanded Nile crocodile eggs
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Pbc Forbes, Johan O. Nothling, Jan G. Myburgh, and Geoffrey James Brown
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food.ingredient ,Nile crocodile ,biology ,Phosphorus ,chemistry.chemical_element ,Calcium ,biology.organism_classification ,Crocodylus ,Animal science ,food ,chemistry ,biology.animal ,Yolk ,Animal Science and Zoology ,Optical emission spectroscopy ,Inductively coupled plasma ,Ecology, Evolution, Behavior and Systematics - Abstract
Research in other species suggests that the source of embryonic calcium (Ca) and phosphorus (P) for Crocodylus niloticus is likely yolk and shell. Using inductively coupled plasma optical emission ...
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- 2021
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9. Real‐Time NMR Monitoring of Spatially Segregated Enzymatic Reactions in Multilayered Hydrogel Assemblies**
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Jan G. Korvink, Gudrun Gygli, Nurdiana Nordin, Hossein Davoodi, Novindi Dwi Ratnawati, Neil MacKinnon, Vlad Badilita, and Lorenzo Bordonali
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Life sciences ,biology ,Immobilized enzyme ,Enzymatic Reactions ,02 engineering and technology ,010402 general chemistry ,Electrochemistry ,01 natural sciences ,Chemical reaction ,Catalysis ,Enzyme catalysis ,Chitosan ,chemistry.chemical_compound ,ddc:570 ,Glucose oxidase ,Research Articles ,Chemistry ,catalase ,General Medicine ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,021001 nanoscience & nanotechnology ,glucose oxidase ,0104 chemical sciences ,Chemical engineering ,13. Climate action ,Reagent ,electrodeposition ,biology.protein ,chitosan ,bioMEMS ,0210 nano-technology ,Research Article - Abstract
Compartmentalized chemical reactions at the microscale are important in biotechnology, yet monitoring the molecular content at these small scales is challenging. To address this challenge, we integrate a compact, reconfigurable reaction cell featuring electrochemical functionality with high‐resolution NMR spectroscopy. We demonstrate the operation of this system by monitoring the activity of enzymes immobilized in chemically distinct layers within a multi‐layered chitosan hydrogel assembly. As a benchmark, we observed the parallel activities of urease (Urs), catalase (Cat), and glucose oxidase (GOx) by monitoring reagent and product concentrations in real‐time. Simultaneous monitoring of an independent enzymatic process (Urs) together with a cooperative process (GOx + Cat) was achieved, with chemical conversion modulation of the GOx + Cat process demonstrated by varying the order in which the hydrogel was assembled., We integrate a compact, reconfigurable reaction cell featuring electrochemical functionality with high‐resolution NMR spectroscopy. This system is used to monitor the activity of enzymes immobilized in chemically distinct layers within a multi‐layered chitosan hydrogel assembly. We observed the parallel activities of urease, catalase, and glucose oxidase by monitoring reagent and product concentrations in real‐time.
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- 2021
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10. Pyrrolizidine alkaloid-induced transcriptomic changes in rat lungs in a 28-day subacute feeding study
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Johanna Ebmeyer, Dirk Schaudien, Otto Creutzenberg, Georgia Guenther, Jan G. Hengstler, Albert Braeuning, Stefanie Hessel-Pras, Heike Sprenger, J.D. Rasinger, Julia Buchmueller, and Publica
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Male ,0301 basic medicine ,Cirrhosis ,Pyrrolizidine alkaloid ,Health, Toxicology and Mutagenesis ,Pharmacology ,Biology ,Toxicology ,Organ Toxicity and Mechanisms ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,medicine ,Animals ,Data Mining ,Pyrrolizidine alkaloids ,Inflammation ,Gene expression ,Transcriptomics ,Lung ,Regulation of gene expression ,Microarray analysis techniques ,Cell Cycle ,General Medicine ,Microarray Analysis ,medicine.disease ,Rats, Inbred F344 ,Rats ,030104 developmental biology ,medicine.anatomical_structure ,Gene Expression Regulation ,chemistry ,030220 oncology & carcinogenesis ,Pyrrolizidine ,Chemical and Drug Induced Liver Injury ,Transcriptome ,Senecionine ,DNA Damage - Abstract
Pyrrolizidine alkaloids (PAs) are secondary plant metabolites synthesized by a wide range of plants as protection against herbivores. These toxins are found worldwide and pose a threat to human health. PAs induce acute effects like hepatic sinusoidal obstruction syndrome and pulmonary arterial hypertension. Moreover, chronic exposure to low doses can induce cancer and liver cirrhosis in laboratory animals. The mechanisms causing hepatotoxicity have been investigated previously. However, toxic effects in the lung are less well understood, and especially data on the correlation effects with individual chemical structures of different PAs are lacking. The present study focuses on the identification of gene expression changes in vivo in rat lungs after exposure to six structurally different PAs (echimidine, heliotrine, lasiocarpine, senecionine, senkirkine, and platyphylline). Rats were treated by gavage with daily doses of 3.3 mg PA/kg bodyweight for 28 days and transcriptional changes in the lung and kidney were investigated by whole-genome microarray analysis. The results were compared with recently published data on gene regulation in the liver. Using bioinformatics data mining, we identified inflammatory responses as a predominant feature in rat lungs. By comparison, in liver, early molecular consequences to PAs were characterized by alterations in cell-cycle regulation and DNA damage response. Our results provide, for the first time, information about early molecular effects in lung tissue after subacute exposure to PAs, and demonstrates tissue-specificity of PA-induced molecular effects. Supplementary Information The online version contains supplementary material available at 10.1007/s00204-021-03108-x.
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- 2021
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11. Contribution to the ongoing discussion on fluoride toxicity
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Eva Mühle, Bernd Epe, Sabine Guth, Jan G. Hengstler, Gerhard Eisenbrand, Richard H. Stadler, Angelika Roth, Hans-Ulrich Humpf, Patrick Diel, Christoph van Thriel, Karolina Edlund, Carsten Watzl, Sabine E. Kulling, Angela Mally, Stephanie Hüser, Elke Röhrdanz, Henry Jäger, Tilman Grune, Michael A. Nitsche, Edmund Wascher, Rosemarie Marchan, Hans-Georg Joost, Volker Heinz, Ute Nöthlings, Alfonso Lampen, Doris Marko, Karl-Heinz Engel, Rudi F. Vogel, Thomas Henle, Gisela H. Degen, and Stefan Vieths
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Risk analysis ,Reply ,medicine.medical_specialty ,Health, Toxicology and Mutagenesis ,Pharmacology toxicology ,MEDLINE ,Pharmacology/Toxicology ,Occupational Medicine/Industrial Medicine ,Environmental Health ,Biomedicine, general ,010501 environmental sciences ,Toxicology ,01 natural sciences ,03 medical and health sciences ,Human health ,chemistry.chemical_compound ,Fluorides ,Fluoride toxicity ,Environmental health ,Epidemiology ,Medicine ,Animals ,Longitudinal Studies ,0105 earth and related environmental sciences ,030505 public health ,business.industry ,Drinking Water ,Confounding ,General Medicine ,ddc ,Europe ,Epidemiologic Studies ,Lebensmitteltoxikologie ,chemistry ,Homogeneous ,0305 other medical science ,business - Abstract
Since the addition of fluoride to drinking water in the 1940s, there have been frequent and sometimes heated discussions regarding its benefits and risks. In a recently published review, we addressed the question if current exposure levels in Europe represent a risk to human health. This review was discussed in an editorial asking why we did not calculate benchmark doses (BMD) of fluoride neurotoxicity for humans. Here, we address the question, why it is problematic to calculate BMDs based on the currently available data. Briefly, the conclusions of the available studies are not homogeneous, reporting negative as well as positive results; moreover, the positive studies lack control of confounding factors such as the influence of well-known neurotoxicants. We also discuss the limitations of several further epidemiological studies that did not meet the inclusion criteria of our review. Finally, it is important to not only focus on epidemiological studies. Rather, risk analysis should consider all available data, including epidemiological, animal, as well as in vitro studies. Despite remaining uncertainties, the totality of evidence does not support the notion that fluoride should be considered a human developmental neurotoxicant at current exposure levels in European countries.
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- 2021
12. Stimulation of de novo glutathione synthesis by nitrofurantoin for enhanced resilience of hepatocytes
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Joost B. Beltman, Hennicke Kamp, Jan G. Hengstler, Bob van de Water, Matthijs Vlasveld, Lukas S Wijaya, Vincent Spegg, Theresa Braun, Stefan Schildknecht, Serif Marangoz, Marcel Leist, Carina Rau, Wiebke Albrecht, and Tim Brecklinghaus
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Paraquat ,0301 basic medicine ,Antioxidant ,NF-E2-Related Factor 2 ,Glutamate-Cysteine Ligase ,Health, Toxicology and Mutagenesis ,medicine.medical_treatment ,Stimulation ,Pharmacology ,Toxicology ,Antioxidants ,Bortezomib ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,ddc:570 ,Rotenone ,medicine ,Humans ,RNA, Small Interfering ,Activator (genetics) ,Cell Biology ,Glutathione ,Nrf2 ,Anti-Bacterial Agents ,Oxidative Stress ,030104 developmental biology ,Nitrofurantoin ,chemistry ,Proteasome ,Nitrofurantoin, Hepatocytes, Nrf2, Glutathione, Cytochrome P450 reductase ,030220 oncology & carcinogenesis ,Toxicity ,Hepatocytes ,Cytochrome P450 reductase ,Proteasome Inhibitors - Abstract
Toxicity is not only a function of damage mechanisms, but is also determined by cellular resilience factors. Glutathione has been reported as essential element to counteract negative influences. The present work hence pursued the question how intracellular glutathione can be elevated transiently to render cells more resistant toward harmful conditions. The antibiotic nitrofurantoin (NFT) was identified to stimulate de novo synthesis of glutathione in the human hepatoma cell line, HepG2, and in primary human hepatocytes. In intact cells, activation of NFT yielded a radical anion, which subsequently initiated nuclear-factor-erythroid 2-related-factor-2 (Nrf2)-dependent induction of glutamate cysteine ligase (GCL). Application of siRNA-based intervention approaches confirmed the involvement of the Nrf2-GCL axis in the observed elevation of intracellular glutathione levels. Quantitative activation of Nrf2 by NFT, and the subsequent rise in glutathione, were similar as observed with the potent experimental Nrf2 activator diethyl maleate. The elevation of glutathione levels, observed even 48 h after withdrawal of NFT, rendered cells resistant to different stressors such as the mitochondrial inhibitor rotenone, the redox cycler paraquat, the proteasome inhibitors MG-132 or bortezomib, or high concentrations of NFT. Repurpose of the antibiotic NFT as activator of Nrf2 could thus be a promising strategy for a transient and targeted activation of the endogenous antioxidant machinery.
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- 2021
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13. Subcellular spatio-temporal intravital kinetics of aflatoxin B1 and ochratoxin A in liver and kidney
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Jan G. Hengstler, Wiebke Albrecht, Abdel-latif Seddek, Ute Hofmann, Reham Hassan, Gisela H. Degen, Lars Kuepfer, Benedikt Cramer, Stefan Hoehme, Adrian Friebel, Peter Boor, Hans-Ulrich Humpf, Maiju Myllys, Ahmed Ghallab, and Albert Braeuning
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0301 basic medicine ,Ochratoxin A ,Male ,Aflatoxin ,Cell type ,Aflatoxin B1 ,Health, Toxicology and Mutagenesis ,Toxicology ,Bone canaliculus ,Kidney ,Two-photon ,Organ Toxicity and Mechanisms ,Excretion ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Spatio-Temporal Analysis ,Pharmacokinetics ,Cytochrome P-450 Enzyme System ,Toxicokinetics ,Animals ,Tissue Distribution ,Microscopy ,biology ,Chemistry ,Cytochrome P450 ,General Medicine ,In vivo imaging ,Mycotoxins ,Molecular biology ,Ochratoxins ,Mice, Inbred C57BL ,030104 developmental biology ,Liver ,biology.protein ,Hepatocytes ,030211 gastroenterology & hepatology ,Half-Life - Abstract
Local accumulation of xenobiotics in human and animal tissues may cause adverse effects. Large differences in their concentrations may exist between individual cell types, often due to the expression of specific uptake and export carriers. Here we established a two-photon microscopy-based technique for spatio-temporal detection of the distribution of mycotoxins in intact kidneys and livers of anesthetized mice with subcellular resolution. The mycotoxins ochratoxin A (OTA, 10 mg/kg b.w.) and aflatoxin B1 (AFB1, 1.5 mg/kg b.w.), which both show blue auto-fluorescence, were analyzed after intravenous bolus injections. Within seconds after administration, OTA was filtered by glomeruli, and enriched in distal tubular epithelial cells (dTEC). A striking feature of AFB1 toxicokinetics was its very rapid uptake from sinusoidal blood into hepatocytes (t1/2 ~ 4 min) and excretion into bile canaliculi. Interestingly, AFB1 was enriched in the nuclei of hepatocytes with zonal differences in clearance. In the cytoplasm of pericentral hepatocytes, the half-life (t1/2~ 63 min) was much longer compared to periportal hepatocytes of the same lobules (t1/2 ~ 9 min). In addition, nuclear AFB1 from periportal hepatocytes cleared faster compared to the pericentral region. These local differences in AFB1 clearance may be due to the pericentral expression of cytochrome P450 enzymes that activate AFB1 to protein- and DNA-binding metabolites. In conclusion, the present study shows that large spatio-temporal concentration differences exist within the same tissues and its analysis may provide valuable additional information to conventional toxicokinetic studies.
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- 2021
14. Histatin-1 is a novel osteogenic factor that promotes bone cell adhesion, migration, and differentiation
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Luis Solano, P. Torres, Mónica Cáceres, Vicente A. Torres, Carlos Mateluna, Sebastián Venegas, Montserrat Reyes, Jan G. M. Bolscher, Nadia Hernández, Patricio Silva, Kamran Nazmi, Alfredo Criollo, Mauricio Garrido, Floris J. Bikker, Academic Centre for Dentistry Amsterdam, and Oral Biochemistry
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Biomedical Engineering ,Medicine (miscellaneous) ,salivary peptide ,wound healing ,Histatins ,mesenchymal ,bone ,osteogenic ,Biomaterials ,Mice ,Calcification, Physiologic ,stomatognathic system ,Cell Movement ,Osteogenesis ,Cell Line, Tumor ,Bone cell ,Cell Adhesion ,Animals ,Humans ,Osteopontin ,Cell adhesion ,Cells, Cultured ,Osteoblasts ,biology ,Chemistry ,Mesenchymal stem cell ,Cell Differentiation ,Mesenchymal Stem Cells ,Cell migration ,differentiation ,Cell biology ,RUNX2 ,Fibronectin ,biology.protein ,Wound healing ,Signal Transduction - Abstract
Histatin-1 is a salivary antimicrobial peptide involved in the maintenance of enamel and oral mucosal homeostasis. Moreover, Histatin-1 has been shown to promote re-epithelialization in soft tissues, by stimulating cell adhesion and migration in oral and dermal keratinocytes, gingival and skin fibroblasts, endothelial cells and corneal epithelial cells. The broad-spectrum activity of Histatin-1 suggests that it behaves as a universal wound healing promoter, although this is far from being clear yet. Here, we report that Histatin-1 is a novel osteogenic factor that promotes bone cell adhesion, migration, and differentiation. Specifically, Histatin-1 promoted cell adhesion, spreading, and migration of SAOS-2 cells and MC3T3-E1 preosteoblasts in vitro, when placed on a fibronectin matrix. Besides, Histatin-1 induced the expression of osteogenic genes, including osteocalcin, osteopontin, and Runx2, and increased both activity and protein levels of alkaline phosphatase. Furthermore, Histatin-1 promoted mineralization in vitro, as it augmented the formation of calcium deposits in both SAOS-2 and MC3T3-E1 cells. Mechanistically, although Histatin-1 failed to activate ERK1/2, FAK, and Akt, which are signaling proteins associated with osteogenic differentiation or cell migration, it triggered nuclear relocalization of β-catenin. Strikingly, the effects of Histatin-1 were recapitulated in cells that are nonosteogenically committed, since it promoted surface adhesion, migration, and the acquisition of osteogenic markers in primary mesenchymal cells derived from the apical papilla and dental pulp. Collectively, these observations indicate that Histatin-1 is a novel osteogenic factor that promotes bone cell differentiation, surface adhesion and migration, as crucial events required for bone tissue regeneration.
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- 2021
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15. Exploring the alpha‐gliadin locus: the 33‐mer peptide with six overlapping coeliac disease epitopes in Triticum aestivum is derived from a subgroup of Aegilops tauschii
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Jan G. Schaart, Luud J.W.J. Gilissen, Danny Esselink, Elma M. J. Salentijn, Svetlana V. Goryunova, Nick Gosman, Marinus J. M. Smulders, Charity Chidzanga, and Alison R. Bentley
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0106 biological sciences ,0301 basic medicine ,Aegilops ,Triticum aestivum ,Epitopes, T-Lymphocyte ,Locus (genetics) ,Plant Science ,alpha-gliadin ,01 natural sciences ,Genome ,Gliadin ,Epitope ,Evolution, Molecular ,03 medical and health sciences ,D genome ,Genetics ,Aegilops tauschii ,Allele ,SHW ,Gene ,Triticum ,re-synthesised bread wheat ,chemistry.chemical_classification ,Genetic diversity ,biology ,alpha‐gliadin ,nutritional and metabolic diseases ,food and beverages ,Original Articles ,Cell Biology ,biology.organism_classification ,T‐cell epitope ,Gluten ,re‐synthesised bread wheat ,synthetic hexaploid wheat ,Plant Breeding ,Celiac Disease ,T-cell epitope ,030104 developmental biology ,chemistry ,gluten ,BIOS Applied Metabolic Systems ,Original Article ,EPS ,coeliac disease ,010606 plant biology & botany - Abstract
Summary Most alpha‐gliadin genes of the Gli‐D2 locus on the D genome of hexaploid bread wheat (Triticum aestivum) encode for proteins with epitopes that can trigger coeliac disease (CD), and several contain a 33‐mer peptide with six partly overlapping copies of three epitopes, which is regarded as a remarkably potent T‐cell stimulator. To increase genetic diversity in the D genome, synthetic hexaploid wheat lines are being made by hybridising accessions of Triticum turgidum (AB genome) and Aegilops tauschii (the progenitor of the D genome). The diversity of alpha‐gliadins in A. tauschii has not been studied extensively. We analysed the alpha‐gliadin transcriptome of 51 A. tauschii accessions representative of the diversity in A. tauschii. We extracted RNA from developing seeds and performed 454 amplicon sequencing of the first part of the alpha‐gliadin genes. The expression profile of allelic variants of the alpha‐gliadins was different between accessions, and also between accessions of the Western and Eastern clades of A. tauschii. Generally, both clades expressed many allelic variants not found in bread wheat. In contrast to earlier studies, we detected the 33‐mer peptide in some A. tauschii accessions, indicating that it was introduced along with the D genome into bread wheat. In these accessions, transcripts with the 33‐mer peptide were present at lower frequencies than in bread wheat varieties. In most A. tauschii accessions, however, the alpha‐gliadins do not contain the epitope, and this may be exploited, through synthetic hexaploid wheats, to breed bread wheat varieties with fewer or no coeliac disease epitopes., Significance Statement We sequenced the expressed alpha‐gliadins in grains of Aegilops tauschii across its range. Some accessions contained the 33‐mer peptide with six overlapping coeliac disease epitopes, indicating that this was introduced into bread wheat from A. tauschii. We also found a large variation in the occurrence of coeliac disease epitopes, including accessions with small numbers of epitopes, suitable as basis for breeding bread wheat varieties with fewer or no coeliac disease epitopes.
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- 2021
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16. Colchicine in patients with chronic coronary disease
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Stefan M, Nidorf, Aernoud T L, Fiolet, Arend, Mosterd, John W, Eikelboom, Astrid, Schut, Tjerk S J, Opstal, Salem H K, The, Xiao-Fang, Xu, Mark A, Ireland, Timo, Lenderink, Donald, Latchem, Pieter, Hoogslag, Anastazia, Jerzewski, Peter, Nierop, Alan, Whelan, Randall, Hendriks, Henk, Swart, Jeroen, Schaap, Aaf F M, Kuijper, Maarten W J, van Hessen, Pradyot, Saklani, Isabel, Tan, Angus G, Thompson, Allison, Morton, Chris, Judkins, Willem A, Bax, Maurits, Dirksen, Marco, Alings, Graeme J, Hankey, Charley A, Budgeon, Jan G P, Tijssen, Jan H, Cornel, Peter L, Thompson, Karen, Youl, Cardiology, and ACS - Heart failure & arrhythmias
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Male ,medicine.medical_specialty ,Vascular damage Radboud Institute for Health Sciences [Radboudumc 16] ,Anti-Inflammatory Agents ,Coronary Disease ,030204 cardiovascular system & hematology ,law.invention ,Coronary artery disease ,03 medical and health sciences ,chemistry.chemical_compound ,Geriatric cardiology ,0302 clinical medicine ,All institutes and research themes of the Radboud University Medical Center ,Randomized controlled trial ,Double-Blind Method ,law ,Internal medicine ,medicine ,Colchicine ,Humans ,In patient ,030212 general & internal medicine ,Aged ,Proportional Hazards Models ,Intention-to-treat analysis ,Proportional hazards model ,business.industry ,Incidence (epidemiology) ,Incidence ,General Medicine ,Middle Aged ,medicine.disease ,Intention to Treat Analysis ,chemistry ,Cardiovascular Diseases ,Chronic Disease ,Cardiology ,Female ,business ,Follow-Up Studies - Abstract
Evidence from a recent trial has shown that the antiinflammatory effects of colchicine reduce the risk of cardiovascular events in patients with recent myocardial infarction, but evidence of such a risk reduction in patients with chronic coronary disease is limited.In a randomized, controlled, double-blind trial, we assigned patients with chronic coronary disease to receive 0.5 mg of colchicine once daily or matching placebo. The primary end point was a composite of cardiovascular death, spontaneous (nonprocedural) myocardial infarction, ischemic stroke, or ischemia-driven coronary revascularization. The key secondary end point was a composite of cardiovascular death, spontaneous myocardial infarction, or ischemic stroke.A total of 5522 patients underwent randomization; 2762 were assigned to the colchicine group and 2760 to the placebo group. The median duration of follow-up was 28.6 months. A primary end-point event occurred in 187 patients (6.8%) in the colchicine group and in 264 patients (9.6%) in the placebo group (incidence, 2.5 vs. 3.6 events per 100 person-years; hazard ratio, 0.69; 95% confidence interval [CI], 0.57 to 0.83; P0.001). A key secondary end-point event occurred in 115 patients (4.2%) in the colchicine group and in 157 patients (5.7%) in the placebo group (incidence, 1.5 vs. 2.1 events per 100 person-years; hazard ratio, 0.72; 95% CI, 0.57 to 0.92; P = 0.007). The incidence rates of spontaneous myocardial infarction or ischemia-driven coronary revascularization (composite end point), cardiovascular death or spontaneous myocardial infarction (composite end point), ischemia-driven coronary revascularization, and spontaneous myocardial infarction were also significantly lower with colchicine than with placebo. The incidence of death from noncardiovascular causes was higher in the colchicine group than in the placebo group (incidence, 0.7 vs. 0.5 events per 100 person-years; hazard ratio, 1.51; 95% CI, 0.99 to 2.31).In a randomized trial involving patients with chronic coronary disease, the risk of cardiovascular events was significantly lower among those who received 0.5 mg of colchicine once daily than among those who received placebo. (Funded by the National Health Medical Research Council of Australia and others; LoDoCo2 Australian New Zealand Clinical Trials Registry number, ACTRN12614000093684.).
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- 2020
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17. Graph Neural Networks for Prediction of Fuel Ignition Quality
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Manuel Dahmen, Andrea König, Alexander Mitsos, Martin Grohe, Jan G. Rittig, and Artur M. Schweidtmann
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Quantitative structure–activity relationship ,Computer science ,Graph neural networks ,General Chemical Engineering ,media_common.quotation_subject ,Energy Engineering and Power Technology ,02 engineering and technology ,Machine learning ,computer.software_genre ,law.invention ,Task (project management) ,chemistry.chemical_compound ,020401 chemical engineering ,law ,Molecular graph ,Quality (business) ,0204 chemical engineering ,media_common ,business.industry ,Deep learning ,Supervised learning ,021001 nanoscience & nanotechnology ,Ensemble learning ,Backpropagation ,Ignition system ,Fuel Technology ,chemistry ,ddc:660 ,Graph (abstract data type) ,Artificial intelligence ,Transfer of learning ,0210 nano-technology ,business ,computer - Abstract
Prediction of combustion-related properties of (oxygenated) hydrocarbons is an important and challenging task for which quantitative structure-property relationship (QSPR) models are frequently employed. Recently, a machine learning method, graph neural networks (GNNs), has shown promising results for the prediction of structure-property relationships. GNNs utilize a graph representation of molecules, where atoms correspond to nodes and bonds to edges containing information about the molecular structure. More specifically, GNNs learn physico-chemical properties as a function of the molecular graph in a supervised learning setup using a backpropagation algorithm. This end-to-end learning approach eliminates the need for selection of molecular descriptors or structural groups, as it learns optimal fingerprints through graph convolutions and maps the fingerprints to the physico-chemical properties by deep learning. We develop GNN models for predicting three fuel ignition quality indicators, i.e., the derived cetane number (DCN), the research octane number (RON), and the motor octane number (MON), of oxygenated and non-oxygenated hydrocarbons. In light of limited experimental data in the order of hundreds, we propose a combination of multi-task learning, transfer learning, and ensemble learning. The results show competitive performance of the proposed GNN approach compared to state-of-the-art QSPR models making it a promising field for future research. The prediction tool is available via a web front-end at www.avt.rwth-aachen.de/gnn.
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- 2020
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18. Calcium and phosphorus in unbanded eggs of the Nile crocodile (Crocodylus niloticus)
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Patricia B.C. Forbes, Jan G. Myburgh, Geoffrey James Brown, and Johan O. Nothling
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food.ingredient ,biology ,Nile crocodile ,Phosphorus ,chemistry.chemical_element ,Zoology ,Aquatic Science ,Calcium ,biology.organism_classification ,Crocodylus ,food ,chemistry ,Yolk ,biology.animal - Published
- 2020
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19. Salivary histatin 1 and 2 are targeted to mitochondria and endoplasmic reticulum in human cells
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Richard T. Jaspers, Gang Wu, Floris J. Bikker, Wei Sun, Dandan Ma, Kamran Nazmi, Enno C. I. Veerman, Jan G. M. Bolscher, Oral Biochemistry, Physiology, AMS - Sports and Work, AMS - Restoration and Development, AMS - Fundamental Research, and Oral Implantology
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0301 basic medicine ,Golgi Apparatus ,Histatins ,Mitochondrion ,Models, Biological ,Article ,Flow cytometry ,Cell Line ,oral saliva ,03 medical and health sciences ,symbols.namesake ,SDG 3 - Good Health and Well-being ,medicine ,Humans ,Amino Acid Sequence ,Saliva ,lcsh:QH301-705.5 ,030102 biochemistry & molecular biology ,medicine.diagnostic_test ,Chemistry ,histatin ,Endoplasmic reticulum ,General Medicine ,Golgi apparatus ,Epithelium ,Recombinant Proteins ,Cell biology ,mitochondria ,HaCaT ,Protein Transport ,endoplasmic reticulum ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Biology (General) ,uptake ,Histatin ,symbols ,Intercellular Signaling Peptides and Proteins ,Mutant Proteins ,Lysosomes ,Intracellular ,Subcellular Fractions - Abstract
Human salivary histatin 1 (Hst1) and Hst2 exhibit a series of cell-activating properties (e.g., promoting adhesion, spreading, migration and metabolic activity of mammalian cells). In contrast, Hst5 shows an anti-fungal property but no cell-activating properties. Previous findings suggest that their uptake and association with subcellular targets may play a determinant role in their functions. In this study, we studied the uptake dynamics and subcellular targets of Hst1, Hst2 and Hst5 in epithelial cells (HO1N1 human buccal carcinoma epithelial cell line). Confocal laser scanning microscopy (CLSM) revealed that fluorescently labeled Hst1 (F-Hst1) was taken up into the intracellular space of epithelial cells. Then, 60 min post-incubation, the total fluorescence of cell-associated F-Hst1, as measured using flow cytometry, was significantly higher compared to those of F-Hst2 and F-Hst5. In contrast, virtually no association occurred using the negative control&mdash, scrambled F-Hst1 (F-Hstscr). CLSM images revealed that F-Hst1, 2 and 5 co-localized with mitotrackerTM-labeled mitochondria. In addition, F-Hst1 and F-Hst2 but neither F-Hst5 nor F-Hst1scr co-localized with the ER-trackerTM-labeled endoplasmic reticulum. No co-localization of Hst1, 2 and 5 with lysosomes or the Golgi apparatus was observed. Furthermore, Hst1 and Hst2 but not Hst5 or Hst1scr significantly promoted the metabolic activity of both human epithelial cell lines, HaCaT human keratinocytes and primary human gingival fibroblasts.
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- 2020
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20. A General Method for Quantification and Discovery of Acyl Groups Attached to Acyl Carrier Proteins in Fatty Acid Metabolism Using LC-MS/MS
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Jeong-Won Nam, Jan G. Jaworski, Douglas K. Allen, Bradley S. Evans, Jia Li, and Lauren M Jenkins
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0106 biological sciences ,0301 basic medicine ,Acylation ,Plant Science ,Mitochondrion ,01 natural sciences ,In Brief ,03 medical and health sciences ,chemistry.chemical_compound ,stomatognathic system ,Tandem Mass Spectrometry ,Lc ms ms ,Acyl Carrier Protein ,Amino Acid Sequence ,Peptide sequence ,Conserved Sequence ,biology ,Fatty acid metabolism ,Fatty Acids ,Lipid metabolism ,Cell Biology ,biology.organism_classification ,humanities ,Biosynthetic Pathways ,Plant Leaves ,Chloroplast ,030104 developmental biology ,Biochemistry ,chemistry ,Carrier protein ,Brassicaceae ,Seeds ,lipids (amino acids, peptides, and proteins) ,Bacteria ,Chromatography, Liquid ,010606 plant biology & botany - Abstract
Acyl carrier proteins (ACPs) are the scaffolds for fatty acid biosynthesis in living systems, rendering them essential to a comprehensive understanding of lipid metabolism. However, accurate quantitative methods to assess individual acyl-ACPs do not exist. We developed a robust method to quantify acyl-ACPs to the picogram level. We successfully identified acyl-ACP elongation intermediates (3-hydroxyacyl-ACPs and 2,3-trans-enoyl-ACPs) and unexpected medium-chain (C10:1, C14:1) and polyunsaturated long-chain (C16:3) acyl-ACPs, indicating both the sensitivity of the method and how current descriptions of lipid metabolism and ACP function are incomplete. Such ACPs are likely important to medium-chain lipid production for fuels and highlight poorly understood lipid remodeling events in the chloroplast. The approach is broadly applicable to type II fatty acid synthase systems found in plants and bacteria as well as mitochondria from mammals and fungi because it capitalizes on a highly conserved Asp-Ser-Leu-Asp amino acid sequence in ACPs to which acyl groups attach. Our method allows for sensitive quantification using liquid chromatography-tandem mass spectrometry with de novo-generated standards and an isotopic dilution strategy and will fill a gap in our understanding, providing insights through quantitative exploration of fatty acid biosynthesis processes for optimal biofuels, renewable feedstocks, and medical studies in health and disease.
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- 2020
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21. Plasma neutrophil gelatinase-associated lipocalin at intensive care unit admission as a predictor of acute kidney injury progression
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Wim Dieperink, Renske Wiersema, Jan G. Zijlstra, Matijs van Meurs, Jacqueline Koeze, Frederik Keus, Iwan C. C. van der Horst, Jenny E. Kootstra-Ros, Cardiovascular Centre (CVC), Critical care, Anesthesiology, Peri-operative and Emergency medicine (CAPE), and Groningen Kidney Center (GKC)
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medicine.medical_specialty ,Population ,030232 urology & nephrology ,Renal function ,urologic and male genital diseases ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,AKI ,Interquartile range ,law ,Internal medicine ,Intensive care ,medicine ,NGAL ,education ,AcademicSubjects/MED00340 ,intensive care ,Transplantation ,Creatinine ,education.field_of_study ,business.industry ,MORTALITY ,Acute kidney injury ,creatinine ,biomarkers ,030208 emergency & critical care medicine ,Original Articles ,medicine.disease ,Intensive care unit ,female genital diseases and pregnancy complications ,chemistry ,Nephrology ,Complication ,business - Abstract
Background Acute kidney injury (AKI) is a common complication in patients during intensive care unit (ICU) admission. AKI is defined as an increase in serum creatinine (SCr) and/or a reduction in urine output. SCr is a marker of renal function with several limitations, which led to the search for biomarkers for earlier AKI detection. Our aim was to study the predictive value of plasma neutrophil gelatinase-associated lipocalin (NGAL) at admission as a biomarker for AKI progression during the first 48 h of ICU admission in an unselected, heterogeneous ICU patient population. Methods We conducted a prospective observational study in an academic tertiary referral ICU population. We recorded AKI progression in all ICU patients during the first 48 h of ICU admission in a 6-week period. Plasma NGAL was measured at admission but levels were not reported to the attending clinicians. As possible predictors of AKI progression, pre-existing AKI risk factors were recorded. We examined the association of clinical parameters and plasma NGAL levels at ICU admission with the incidence and progression of AKI within the first 48 h of the ICU stay. Results A total of 361 patients were included. Patients without AKI progression during the first 48 h of ICU admission had median NGAL levels at admission of 115 ng/mL [interquartile range (IQR) 81–201]. Patients with AKI progression during the first 48 h of ICU admission had median NGAL levels at admission of 156 ng/mL (IQR 97–267). To predict AKI progression, a multivariant model with age, sex, diabetes mellitus, body mass index, admission type, Acute Physiology and Chronic Health Evaluation score and SCr at admission had an area under the receiver operating characteristics (ROC) curve of 0.765. Adding NGAL to this model showed a small increase in the area under the ROC curve to 0.783 (95% confidence interval 0.714–0.853). Conclusions NGAL levels at admission were higher in patients with progression of AKI during the first 48 h of ICU admission, but adding NGAL levels at admission to a model predicting this AKI progression showed no significant additive value.
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- 2020
22. Enhanced activation of human NK cells by drug-exposed hepatocytes
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Regina Stöber, Jan G. Hengstler, Carsten Watzl, Martin Obholzer, Frank Fasbender, and Sarah Metzler
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0301 basic medicine ,Health, Toxicology and Mutagenesis ,Cell ,Toxicology ,Interferon-gamma ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,In vivo ,Interferon ,Isoniazid ,medicine ,Humans ,RTCA ,Cytotoxicity ,Drug-induced liver injury ,Natural killer cells ,xCELLigence ,Hepatocytes ,Liver injury ,Natural Cytotoxicity Triggering Receptor 3 ,Aspirin ,Chemistry ,Valproic Acid ,Histocompatibility Antigens Class I ,General Medicine ,Cytotoxicity Tests, Immunologic ,medicine.disease ,Antibodies, Neutralizing ,Coculture Techniques ,Killer Cells, Natural ,Ketoconazole ,030104 developmental biology ,medicine.anatomical_structure ,Gene Expression Regulation ,NK Cell Lectin-Like Receptor Subfamily K ,Cell culture ,030220 oncology & carcinogenesis ,Hepatocyte ,Cancer research ,Chemical and Drug Induced Liver Injury ,medicine.drug - Abstract
Drug-induced liver injury (DILI) represents one of the major causes why drugs have to be withdrawn from the market. In this study, we describe a new interaction between drug-exposed hepatocytes and natural killer (NK) cells. In a previous genome-wide expression analysis of primary human hepatocytes that had been exposed to clinically relevant concentrations of 148 drugs, we found that several activating ligands for NK cell receptors were regulated by various drugs (e.g., valproic acid, ketoconazole, promethazine, isoniazid). Especially expression of the activating NKG2D ligands (MICA, MICB and ULBPs) and the NKp30 ligand B7-H6 were upregulated in primary human hepatocytes upon exposure to many different drugs. Using the human hepatocyte cell lines Huh7 and HepG2, we confirmed that protein levels of activating NK cell ligands were elevated after drug exposure. Hepatocyte cell lines or primary human hepatocytes co-cultivated with NK cells caused enhanced NK cell activation after pretreatment with drugs at in vivo relevant concentrations compared to solvent controls. Enhanced NK cell activation was evident by increased cytotoxicity against hepatocytes and interferon (IFN)-γ production. NK cell activation could be blocked by specific antibodies against activating NK cell receptors. These data support the hypothesis that NK cells can modulate drug-induced liver injury by direct interaction with hepatocytes resulting in cytotoxicity and IFN-γ production.
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- 2020
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23. Prototyping a Microfluidic Sensor for Real-Time Detection of Airborne Formaldehyde
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Jan G. Korvink, Stéphane Colin, Jürgen Brandner, Stéphane Le Calvé, Lucien Baldas, and Daniel Măriuța
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chemistry.chemical_classification ,Fabrication ,Materials science ,Microfluidics ,Formaldehyde ,Nanotechnology ,02 engineering and technology ,Polymer ,021001 nanoscience & nanotechnology ,Chip ,World health ,chemistry.chemical_compound ,020401 chemical engineering ,chemistry ,CMOS ,Volatile organic compound ,0204 chemical engineering ,0210 nano-technology - Abstract
Formaldehyde is a carcinogenic volatile organic compound that is largely used in the fabrication process of a variety of household products, being sometimes released indoor in concentrations that are beyond the limits recommended by the World Health Organization. The current commercially available formaldehyde sensors are far from simultaneously being ultra-portable, highly sensitive (< 1 ppb), real-time, and especially cost-efficient. This work aims to study the feasibility to miniaturize the formaldehyde sensing system down to a palm hand device, based on the microfluidic Hantzsch reaction method and fluorescence detection. A Gas-Liquid Micro-Reactor based on integration of a hydrophobic membrane inside a polymer flat chip is proposed and its formaldehyde trapping yield is planned to be further tested. By combining contact sensing with time-resolved CMOS sensors, the dimensions of the fluorescence detection component could go down to 10 mm × 20 mm × 30 mm by using commercialavailable components and therefore, enabling continuous and fast-response measurements using small volumes and low concentration samples.
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- 2020
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24. The hepatocyte export carrier inhibition assay improves the separation of hepatotoxic from non-hepatotoxic compounds
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Ahmed Ghallab, Frans G. M. Russel, Georgia Günther, Gerhard F. Ecker, Jörg Reinders, Amruta Damle-Vartak, Franziska Kappenberg, Jörg Rahnenführer, Dominic P. Williams, Marcel Leist, Alison J. Foster, Wiebke Albrecht, Rosemarie Marchan, Nachiket Vartak, Iain Gardner, Cristina Cadenas, Karolina Edlund, Julia Duda, Melanie Grandits, Tim Brecklinghaus, Mian Zhang, Naim Kittana, and Jan G. Hengstler
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DILI ,cholestasis ,transport ,medicine.drug_class ,Cmax ,Cell Culture Techniques ,Pharmacology ,Toxicology ,Pharmacokinetics ,ddc:570 ,Toxicity Tests ,medicine ,Humans ,Cholestasis, DILI, Transport ,ATP Binding Cassette Transporter, Subfamily B, Member 11 ,Cells, Cultured ,Liver injury ,Bile acid ,Chemistry ,Cytotoxins ,Multidrug resistance-associated protein 2 ,General Medicine ,medicine.disease ,Fluoresceins ,In vitro ,Multidrug Resistance-Associated Protein 2 ,Mitochondria ,medicine.anatomical_structure ,Renal disorders Radboud Institute for Molecular Life Sciences [Radboudumc 11] ,Hepatocyte ,Toxicity ,Hepatocytes ,Chemical and Drug Induced Liver Injury - Abstract
Contains fulltext : 248670.pdf (Publisher’s version ) (Open Access) An in vitro/in silico method that determines the risk of human drug induced liver injury in relation to oral doses and blood concentrations of drugs was recently introduced. This method utilizes information on the maximal blood concentration (C(max)) for a specific dose of a test compound, which can be estimated using physiologically-based pharmacokinetic modelling, and a cytotoxicity test in cultured human hepatocytes. In the present study, we analyzed if the addition of an assay that measures the inhibition of bile acid export carriers, like BSEP and/or MRP2, to the existing method improves the differentiation of hepatotoxic and non-hepatotoxic compounds. Therefore, an export assay for 5-chloromethylfluorescein diacetate (CMFDA) was established. We tested 36 compounds in a concentration-dependent manner for which the risk of hepatotoxicity for specific oral doses and the capacity to inhibit hepatocyte export carriers are known. Compared to the CTB cytotoxicity test, substantially lower EC(10) values were obtained using the CMFDA assay for several known BSEP and/or MRP2 inhibitors. To quantify if the addition of the CMFDA assay to our test system improves the overall separation of hepatotoxic from non-hepatotoxic compounds, the toxicity separation index (TSI) was calculated. We obtained a better TSI using the lower alert concentration from either the CMFDA or the CTB test (TSI: 0.886) compared to considering the CTB test alone (TSI: 0.775). In conclusion, the data show that integration of the CMFDA assay with an in vitro test battery improves the differentiation of hepatotoxic and non-hepatotoxic compounds in a set of compounds that includes bile acid export carrier inhibitors.
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- 2022
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25. Nanoantennas Inversely Designed to Couple Free Space and a Metal–Insulator–Metal Waveguide
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Yu Lin, Jan G. Korvink, Yeming Han, Huigao Duan, Wei Ma, and Yongbo Deng
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Photon ,General Chemical Engineering ,surface plasmon ,Physics::Optics ,Article ,law.invention ,law ,General Materials Science ,Wave vector ,QD1-999 ,Engineering & allied operations ,Plasmon ,topology optimization ,Physics ,business.industry ,Surface plasmon ,Refraction ,metal–insulator–metal waveguide ,Wavelength ,Chemistry ,Optoelectronics ,nanoantenna ,ddc:620 ,Photonics ,business ,Waveguide - Abstract
The metal–insulator–metal (MIM) waveguide, which can directly couple free space photons, acts as an important interface between conventional optics and subwavelength photoelectrons. The reason for the difficulty of this optical coupling is the mismatch between the large wave vector of the MIM plasmon mode and photons. With the increase in the wave vector, there is an increase in the field and Ohmic losses of the metal layer, and the strength of the MIM mode decreases accordingly. To solve those problems, this paper reports on inversely designed nanoantennas that can couple the free space and MIM waveguide and efficiently excite the MIM plasmon modes at multiple wavelengths and under oblique angles. This was achieved by implementing an inverse design procedure using a topology optimization approach. Simulation analysis shows that the coupling efficiency is enhanced 9.47-fold by the nanoantenna at the incident wavelength of 1338 nm. The topology optimization problem of the nanoantennas was analyzed by using a continuous adjoint method. The nanoantennas can be inversely designed with decreased dependence on the wavelength and oblique angle of the incident waves. A nanostructured interface on the subwavelength scale can be configured in order to control the refraction of a photonic wave, where the periodic unit of the interface is composed of two inversely designed nanoantennas that are decoupled and connected by an MIM waveguide.
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- 2021
26. Reply
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Nachiket Vartak and Jan G. Hengstler
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Bile flow ,Bile canaliculus ,Hepatology ,Chemistry ,Water flow ,Biophysics ,digestive system ,Blood stream ,Flux (metabolism) - Abstract
Clarification - We do not comment on water flow from hepatocytes "into the bile canaliculus" but instead, have studied bile flux within the canalicular network. Validation of Photoactivation - We validated the mentioned photoactivation technique in biological structures, provided raw data and have discussed the imaging technicalities in detail; for example, this intravital video shows how photoactivated material moves unidirectionally in the blood stream.
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- 2021
27. The Role of the Liver in Iron Homeostasis and What Goes Wrong?
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Ernesto Robalino Gonzaga, Irene T. Riestra Guiance, Richard Henriquez, Jan G. Freeman, and Gerri Mortimore
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Iron homeostasis ,Chemistry ,iron homeostasis ,RC870-923 ,iron overload ,liver ,RC648-665 ,Diseases of the endocrine glands. Clinical endocrinology ,Diseases of the genitourinary system. Urology ,Cell biology - Abstract
Iron is an essential mineral that is vital for growth development, normal cellular function, synthesis of hormones and connective tissue, and most importantly, serves as a component of hemoglobin to carry oxygen to body tissues. The body finely regulates the amount of circulating and stored iron within the body to maintain concentration levels within range for optimal physiologic function. Without iron, the ability for cells to participate in electron transport and energy metabolism decreases. Furthermore, hemoglobin synthesis is altered, which leads to anemia and decreased oxygen delivery to tissue. Problems arise when there is too little or too much iron. This review explores the role of the liver in iron physiology, iron overload and discusses the most common causes of primary and secondary hepatic iron overload.
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- 2021
28. Inflammation-associated suppression of metabolic gene networks in acute and chronic liver disease
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Rajanikanth Vadigepalli, Jan B. Hoek, Agata Widera, Daniela González, Cristina Cadenas, Karolina Edlund, Benjamin K. Banhart, Jan G. Hengstler, Larissa Pütter, Reinhard Guthke, Patricio Godoy, David C. Hay, Rosemarie Marchan, James L. Stevens, G Campos, Jeffrey Willy, Catherine M. Verfaillie, Wolfgang Schmidt-Heck, Thomas S. Weiß, Jonathan De Smedt, Claudio Hetz, Agapios Sachinidis, Michael Schwarz, Ahmed Ghallab, and Albert Braeuning
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Liver Cirrhosis ,Male ,0301 basic medicine ,Necrosis ,Health, Toxicology and Mutagenesis ,Liver injury ,010501 environmental sciences ,Toxicology ,Chronic liver disease ,01 natural sciences ,EXPRESSION PROFILES ,chemistry.chemical_compound ,Non-alcoholic Fatty Liver Disease ,Gene Regulatory Networks ,Carbon Tetrachloride ,Hepatitis, Chronic ,Gene networks ,Liver Neoplasms ,Fatty liver ,General Medicine ,Tunicamycin ,Hepatitis B ,3. Good health ,IRE1-ALPHA ,Chemical and Drug Induced Liver Injury, Chronic ,MOUSE-LIVER ,AUTOPHAGY ,medicine.symptom ,Life Sciences & Biomedicine ,Signal Transduction ,Carcinoma, Hepatocellular ,HEPATOTOXICITY ,PATHOPHYSIOLOGY ,Inflammation ,Biology ,03 medical and health sciences ,Downregulation and upregulation ,REGENERATION ,medicine ,Animals ,Humans ,Transcriptomics ,0105 earth and related environmental sciences ,HEPATOCYTE ,Science & Technology ,Regeneration (biology) ,NUCLEAR FACTOR 4-ALPHA ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,chemistry ,CELLS ,Cancer research - Abstract
Inflammation has been recognized as essential for restorative regeneration. Here, we analyzed the sequential processes during onset of liver injury and subsequent regeneration based on time-resolved transcriptional regulatory networks (TRNs) to understand the relationship between inflammation, mature organ function, and regeneration. Genome-wide expression and TRN analysis were performed time dependently in mouse liver after acute injury by CCl4 (2 h, 8 h, 1, 2, 4, 6, 8, 16 days), as well as lipopolysaccharide (LPS, 24 h) and compared to publicly available data after tunicamycin exposure (mouse, 6 h), hepatocellular carcinoma (HCC, mouse), and human chronic liver disease (non-alcoholic fatty liver, HBV infection and HCC). Spatiotemporal investigation differentiated lobular zones for signaling and transcription factor expression. Acute CCl4 intoxication induced expression of gene clusters enriched for inflammation and stress signaling that peaked between 2 and 24 h, accompanied by a decrease of mature liver functions, particularly metabolic genes. Metabolism decreased not only in pericentral hepatocytes that underwent CCl4-induced necrosis, but extended to the surviving periportal hepatocytes. Proliferation and tissue restorative TRNs occurred only later reaching a maximum at 48 h. The same upstream regulators (e.g. inhibited RXR function) were implicated in increased inflammation and suppressed metabolism. The concomitant inflammation/metabolism TRN occurred similarly after acute LPS and tunicamycin challenges, in chronic mouse models and also in human liver diseases. Downregulation of metabolic genes occurs concomitantly to induce inflammation-associated genes as an early response and appears to be initiated by similar upstream regulators in acute and chronic liver diseases in humans and mice. In the acute setting, proliferation and restorative regeneration associated TRNs peak only later when metabolism is already suppressed. ispartof: ARCHIVES OF TOXICOLOGY vol:94 issue:1 pages:205-217 ispartof: location:Germany status: published
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- 2020
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29. The pyrrolizidine alkaloid senecionine induces CYP-dependent destruction of sinusoidal endothelial cells and cholestasis in mice
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Johanna Ebmeyer, Stefanie Hessel-Pras, Albert Braeuning, Colin J. Henderson, Georgia Guenther, Alshaimaa Adawy, Anne-Margarethe Enge, Alfonso Lampen, Raymond Reif, and Jan G. Hengstler
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Male ,0301 basic medicine ,Platelet Aggregation ,Pyrrolizidine alkaloid ,Health, Toxicology and Mutagenesis ,010501 environmental sciences ,Toxicology ,01 natural sciences ,Necrosis ,03 medical and health sciences ,chemistry.chemical_compound ,Cytochrome P-450 Enzyme System ,Cholestasis ,Toxicity Tests ,medicine ,Animals ,Lobules of liver ,ABCB11 ,Cytotoxicity ,Cells, Cultured ,Pyrrolizidine Alkaloids ,0105 earth and related environmental sciences ,Mice, Knockout ,biology ,Endothelial Cells ,Cytochrome P450 ,General Medicine ,medicine.disease ,Molecular biology ,Mice, Inbred C57BL ,030104 developmental biology ,Gene Expression Regulation ,Liver ,chemistry ,Hepatocytes ,biology.protein ,Senecionine ,Drug metabolism - Abstract
Pyrrolizidine alkaloids (PAs) are widely occurring phytotoxins which can induce severe liver damage in humans and other mammalian species by mechanisms that are not fully understood. Therefore, we investigated the development of PA hepatotoxicity in vivo, using an acutely toxic dose of the PA senecionine in mice, in combination with intravital two-photon microscopy, histology, clinical chemistry, and in vitro experiments with primary mouse hepatocytes and liver sinusoidal endothelial cells (LSECs). We observed pericentral LSEC necrosis together with elevated sinusoidal marker proteins in the serum of senecionine-treated mice and increased sinusoidal platelet aggregation in the damaged tissue regions. In vitro experiments showed no cytotoxicity to freshly isolated LSECs up to 500 µM senecionine. However, metabolic activation of senecionine by preincubation with primary mouse hepatocytes increased the cytotoxicity to cultivated LSECs with an EC50 of approximately 22 µM. The cytochrome P450 (CYP)-dependency of senecionine bioactivation was confirmed in CYP reductase-deficient mice where no PA-induced hepatotoxicity was observed. Therefore, toxic metabolites of senecionine are generated by hepatic CYPs, and may be partially released from hepatocytes leading to destruction of LSECs in the pericentral region of the liver lobules. Analysis of hepatic bile salt transport by intravital two-photon imaging revealed a delayed uptake of a fluorescent bile salt analogue from the hepatic sinusoids into hepatocytes and delayed elimination. This was accompanied by transcriptional deregulation of hepatic bile salt transporters like Abcb11 or Abcc1. In conclusion, senecionine destroys LSECs although the toxic metabolite is formed in a CYP-dependent manner in the adjacent pericentral hepatocytes.
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- 2019
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30. Anaerobic reduction of europium by a Clostridium strain as a strategy for rare earth biorecovery
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Maleke Maleke, Angel Valverde, Liza Coetsee-Hugo, Esta van Heerden, Julio Castillo, Jan-G Vermeulen, Errol D. Cason, Alba Gomez-Arias, Hendrik C. Swart, National Research Foundation (South Africa), Valverde Portal, Ángel, and Valverde Portal, Ángel [0000-0003-0439-9605]
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0301 basic medicine ,chemistry.chemical_element ,lcsh:Medicine ,010501 environmental sciences ,01 natural sciences ,Article ,Mining ,Applied microbiology ,Metal ,Industrial Microbiology ,Soil ,03 medical and health sciences ,Clostridium ,Europium ,Anaerobiosis ,lcsh:Science ,Soil Microbiology ,0105 earth and related environmental sciences ,Multidisciplinary ,Pyruvate synthase ,biology ,Strain (chemistry) ,lcsh:R ,Biogeochemistry ,biology.organism_classification ,Bioaccumulation ,Environmental sciences ,030104 developmental biology ,chemistry ,Biochemistry ,visual_art ,biology.protein ,visual_art.visual_art_medium ,lcsh:Q ,Oxidation-Reduction ,Intracellular ,Bacteria - Abstract
11 páginas, 7 figuras, The biorecovery of europium (Eu) from primary (mineral deposits) and secondary (mining wastes) resources is of interest due to its remarkable luminescence properties, important for modern technological applications. In this study, we explored the tolerance levels, reduction and intracellular bioaccumulation of Eu by a site-specific bacterium, Clostridium sp. 2611 isolated from Phalaborwa carbonatite complex. Clostridium sp. 2611 was able to grow in minimal medium containing 0.5 mM Eu3+. SEM-EDX analysis confirmed an association between Eu precipitates and the bacterium, while TEM-EDX analysis indicated intracellular accumulation of Eu. According to the HR-XPS analysis, the bacterium was able to reduce Eu3+ to Eu2+ under growth and non-growth conditions. Preliminary protein characterization seems to indicate that a cytoplasmic pyruvate oxidoreductase is responsible for Eu bioreduction. These findings suggest the bioreduction of Eu3+ by Clostridium sp. as a resistance mechanism, can be exploited for the biorecovery of this metal., This research was conducted with financial support from the Technology and Innovation Agency. The financial assistance of the National Research Foundation of South Africa (88833 and 106460) towards this research is hereby acknowledged.
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- 2019
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31. Mechanical strain mimicking breathing amplifies alterations in gene expression induced by SiO2 NPs in lung epithelial cells
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Carmen Schmitz, Jennifer Welck, Alexandra K. Kiemer, Jan G. Hengstler, Christoph van Thriel, Marianna Grinberg, Isabella Tavernaro, Jörg Rahnenführer, and Annette Kraegeloh
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A549 cell ,Lung ,Strain (chemistry) ,Chemistry ,Engineered nanomaterials ,Biomedical Engineering ,Inflammation ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,Toxicology ,01 natural sciences ,Cell biology ,Human health ,medicine.anatomical_structure ,Gene expression ,medicine ,Breathing ,medicine.symptom ,0210 nano-technology ,0105 earth and related environmental sciences - Abstract
The effects of engineered nanomaterials on human health are still intensively studied in order to facilitate their safe application. However, relatively little is known how mechanical strai...
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- 2019
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32. Recent Advances in Rh/CGO Co-Impregnated La0.20Sr0.25Ca0.45TiO3 Anodes for Solid Oxide Fuel Cells: Evaluation of Upscaling and Durability
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Andreas Mai, Maarten C. Verbraeken, Jan G. Grolig, Ueli Weissen, John T. S. Irvine, Robert Price, Eguchi, K., Singhal, S. C., EPSRC, University of St Andrews. School of Chemistry, University of St Andrews. Centre for Designer Quantum Materials, and University of St Andrews. EaSTCHEM
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Microstructural evolution ,Materials science ,TK ,Metallurgy ,NDAS ,Oxide ,QD Chemistry ,Durability ,TK Electrical engineering. Electronics Nuclear engineering ,Anode ,chemistry.chemical_compound ,chemistry ,Fuel cells ,QD ,Engineering(all) - Abstract
Funding: University of St Andrews and HEXIS AG; UK EPSRC grants: EP/M014304/1 “Tailoring of Microstructural Evolution in Impregnated SOFC Electrodes” and EP/L017008/1 “Capital for Great Technologies”. Recent research carried out at the University of St Andrews and HEXIS has focussed on a novel A-site deficient perovskite: La0.20Sr0.25Ca0.45TiO3 (LSCTA-) as a potential replacement material for the Ni-based cermet. LSCTA- is a mixed ionic and electronic conductor, which exhibits a high effective electrical conductivity for this class of limited conductivity perovskite, allowing a single-phase anode 'backbone' to be employed and removing the challenges associated with utilisation of a structural Ni phase. Co-impregnating this 'backbone' with a variety of transition/platinum group metals, as well as Ce0.80Gd0.20O1.90 (CG20), produces intricately nanostructured anode materials with high electrocatalytic activity for fuel oxidation. Here we provide an overview of the first 'all-oxide' SOFC stack test at HEXIS, as well as an in depth exploration of the 'powder-to-power' development of these co-impregnated LSCTA- anodes including: ceramic processing, catalyst selection, short-term testing, characterisation by AC impedance spectroscopy and durability testing of promising candidate catalyst systems. Postprint
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- 2019
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33. Chromium Oxidation and Evaporation on Interconnects from a Stack and CHP-Systems Perspective
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Andreas Mai, Gino G. Longo, and Jan G. Grolig
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Materials science ,Continuous operation ,Metallurgy ,Oxide ,chemistry.chemical_element ,Evaporation (deposition) ,Cathode ,law.invention ,Chromium ,chemistry.chemical_compound ,chemistry ,Stack (abstract data type) ,law ,Heat exchanger ,Perovskite (structure) - Abstract
Regardless of the material used for interconnects in SOFC stacks, whether it is based on ferritic stainless steels or on chromium based material systems, chromium oxide scales will be formed on the interconnects' surface during operation. In connection to the oxide scale formation, chromium evaporation is a commonly observed and researched issue. It was shown that evaporated chromium species did not harm the cathode's performance significantly for more than 40.000 h of continuous operation in both short stack and full stack level with the Hexis repeat unit concept. Short stacks with varying operation times were subjected to post-mortem analysis and characterized for oxide scale thicknesses. Additionally, an effective chromium filter system based on a perovskite material system was designed and integrated into the exhaust gas stream before the heat exchanger. The filter concept was operated for more than 10.000 h in Hexis CHP-systems, some on full and, some on part load. During the experiments, condensate samples were taken in regular intervals and none of them contained Cr species.
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- 2019
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34. Prediction of human drug-induced liver injury (DILI) in relation to oral doses and blood concentrations
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Alejandro Aguayo-Orozco, Wolfgang Moritz, Wiebke Albrecht, Christoph van Thriel, Heidrun Ellinger-Ziegelbauer, Susann Fayyaz, Tobias S. Schiergens, Anne Cathrin Behr, Anett Ullrich, José V. Castell, Karolina Edlund, Franziska Kappenberg, Georg Damm, Leon van Aerts, Nachiket Vartak, Dieter Runge, Iain Gardner, Jörg Reinders, Ahmed Ghallab, Marcel Leist, Reinhard Kreiling, Agapios Sachinidis, Bård Smedsrød, Tim Brecklinghaus, Thomas Steger-Hartmann, Albert Braeuning, Anja Zeigerer, Daniel Seehofer, Thorsten Buhrke, Marianna Grinberg, Rosemarie Marchan, Laia Tolosa, Cristina Cadenas, Lars Kuepfer, Jörg Rahnenführer, Bob van de Water, Mian Zhang, Alfonso Lampen, Hendrik Kirschner, Regina Stoeber, Axel Oberemm, Kristina E Ebbert, Naim Kittana, Xiaolong Gu, Jan G. Hengstler, Klaus Golka, Ursula Gundert-Remy, and Serene M. L. Lee
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0301 basic medicine ,Support Vector Machine ,Acceptable daily intake ,Health, Toxicology and Mutagenesis ,Administration, Oral ,Gene Expression ,Poison control ,010501 environmental sciences ,Pharmacology ,Toxicology ,01 natural sciences ,Cultivated hepatocytes ,Liver injury ,Chemistry ,3D culture ,cryopreserved ,cultivated hepatocytes ,performance metrics ,alternative methods ,hepatotoxicity ,General Medicine ,Alternative methods ,Pharmaceutical Preparations ,Cultivated hepatocytes, Cryopreserved 3D culture, Alternative methods, Hepatotoxicity, Performance metrics ,Toxicity ,Chemical and Drug Induced Liver Injury ,Algorithms ,Drug-Related Side Effects and Adverse Reactions ,Maximum Tolerated Dose ,Cell Survival ,Cmax ,Cryopreserved ,In Vitro Techniques ,Sensitivity and Specificity ,Cell Line ,3d Culture ,Alternative Methods ,Cultivated Hepatocytes ,Hepatotoxicity ,Performance Metrics ,03 medical and health sciences ,Pharmacokinetics ,In vivo ,ddc:570 ,medicine ,Animals ,Humans ,Computer Simulation ,VDP::Medisinske Fag: 700 ,0105 earth and related environmental sciences ,EC50 ,Reproducibility of Results ,medicine.disease ,VDP::Medical disciplines: 700 ,030104 developmental biology ,Performance metrics ,Hepatocytes - Abstract
Drug-induced liver injury (DILI) cannot be accurately predicted by animal models. In addition, currently available in vitro methods do not allow for the estimation of hepatotoxic doses or the determination of an acceptable daily intake (ADI). To overcome this limitation, an in vitro/in silico method was established that predicts the risk of human DILI in relation to oral doses and blood concentrations. This method can be used to estimate DILI risk if the maximal blood concentration (Cmax) of the test compound is known. Moreover, an ADI can be estimated even for compounds without information on blood concentrations. To systematically optimize the in vitro system, two novel test performance metrics were introduced, the toxicity separation index (TSI) which quantifies how well a test differentiates between hepatotoxic and non-hepatotoxic compounds, and the toxicity estimation index (TEI) which measures how well hepatotoxic blood concentrations in vivo can be estimated. In vitro test performance was optimized for a training set of 28 compounds, based on TSI and TEI, demonstrating that (1) concentrations where cytotoxicity first becomes evident in vitro (EC10) yielded better metrics than higher toxicity thresholds (EC50); (2) compound incubation for 48 h was better than 24 h, with no further improvement of TSI after 7 days incubation; (3) metrics were moderately improved by adding gene expression to the test battery; (4) evaluation of harmacokinetic parameters demonstrated that total blood compound concentrations and the 95%-population-based percentile of Cmax were best suited to estimate human toxicity. With a support vector machine-based classifier, using EC10 and Cmax as variables, the cross-validated sensitivity, specificity and accuracy for hepatotoxicity prediction were 100, 88 and 93%, respectively. Concentrations in the culture medium allowed extrapolation to blood concentrations in vivo that are associated with a specific probability of hepatotoxicity and the corresponding oral doses were obtained by reverse modeling. Application of this in vitro/in silico method to the rat hepatotoxicant pulegone resulted in an ADI that was similar to values previously established based on animal experiments. In conclusion, the proposed method links oral doses and blood concentrations of test compounds to the probability of hepatotoxicity.
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- 2019
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35. Partial Deletion of Tie2 Affects Microvascular Endothelial Responses to Critical Illness in A Vascular Bed and Organ-Specific Way
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Peter J. Zwiers, Nicolette C. A. Huijkman, Matijs van Meurs, Bart van de Sluis, Jill Moser, Jan G. Zijlstra, Daphne Dekker, Henk E. Moorlag, Rianne M. Jongman, Eliane R. Popa, Grietje Molema, Marleen van der Laan, Center for Liver, Digestive and Metabolic Diseases (CLDM), Critical care, Anesthesiology, Peri-operative and Emergency medicine (CAPE), Groningen Kidney Center (GKC), Translational Immunology Groningen (TRIGR), Restoring Organ Function by Means of Regenerative Medicine (REGENERATE), and Nanotechnology and Biophysics in Medicine (NANOBIOMED)
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Lipopolysaccharides ,Lipopolysaccharide ,030204 cardiovascular system & hematology ,MOUSE ,Critical Care and Intensive Care Medicine ,NF-κB ,Receptor tyrosine kinase ,Mice ,chemistry.chemical_compound ,0302 clinical medicine ,Ang(x) ,Receptor ,vascular cell adhesion molecule 1 ,heterozygous Tie2 knockout mice ,VCAM-1 ,Mice, Knockout ,Kidney ,WT ,biology ,RESUSCITATION ,endotoxemia ,Cell adhesion molecule ,Chemistry ,lipopolysaccharide ,HEMORRHAGIC-SHOCK ,HS+R ,Intercellular Adhesion Molecule-1 ,hemorrhagic shock followed by resuscitation ,Receptor, TIE-2 ,intercellular adhesion molecule 1 ,Tie2 ,surgical procedures, operative ,medicine.anatomical_structure ,nuclear factor-kappaB ,Organ Specificity ,embryonic structures ,Knockout mouse ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,cardiovascular system ,Emergency Medicine ,wild type ,medicine.symptom ,E-Selectin ,tissues ,NEUTROPHIL ,medicine.medical_specialty ,LPS ,TYROSINE KINASE TIE2 ,ICAM-1 ,tyrosine-protein kinase receptor ,Vascular Cell Adhesion Molecule-1 ,Inflammation ,03 medical and health sciences ,KIDNEY ,Angiopoietin (x) ,Internal medicine ,medicine ,Animals ,Messenger RNA ,Basic Science Aspects ,Endothelial Cells ,030208 emergency & critical care medicine ,Tie2+/+ ,DYSFUNCTION ,ANGIOPOIETIN-1 ,Tie2+/− ,Endocrinology ,TEK ,CELLS ,Microvessels ,biology.protein ,Leukocyte Common Antigens ,wild type littermate controls ,sense organs ,leukocyte influx ,microvascular endothelium ,Adhesion molecules - Abstract
Supplemental Digital Content is available in the text, Tyrosine kinase receptor (Tie2) is mainly expressed by endothelial cells. In animal models mimicking critical illness, Tie2 levels in organs are temporarily reduced. Functional consequences of these reduced Tie2 levels on microvascular endothelial behavior are unknown. We investigated the effect of partial deletion of Tie2 on the inflammatory status of endothelial cells in different organs. Newly generated heterozygous Tie2 knockout mice (exon 9 deletion, ΔE9/Tie2+/−) exhibiting 50% reduction in Tie2 mRNA and protein, and wild-type littermate controls (Tie2+/+), were subjected to hemorrhagic shock and resuscitation (HS + R), or challenged with i.p. lipopolysaccharide (LPS). Kidney, liver, lung, heart, brain, and intestine were analyzed for mRNA levels of adhesion molecules E-selectin, vascular cell adhesion molecule 1 (VCAM-1), and intercellular cell adhesion molecule 1 (ICAM-1), and CD45. Exposure to HS + R did not result in different expression responses of these molecules between organs from Tie2+/− or Tie2+/+ mice and sham-operated mice. In contrast, the LPS-induced mRNA expression levels of E-selectin, VCAM-1, and ICAM-1, and CD45 in organs were attenuated in Tie2+/− mice when compared with Tie2+/+ mice in kidney and liver, but not in the other organs studied. Furthermore, reduced expression of E-selectin and VCAM-1 protein, and reduced influx of CD45+ cells upon LPS exposure, was visible in a microvascular bed-specific pattern in kidney and liver of Tie2+/− mice compared with controls. In contrast to the hypothesis that a disbalance in the Ang/Tie2 system leads to increased microvascular inflammation, heterozygous deletion of Tie2 is associated with an organ-restricted, microvascular bed-specific attenuation of endothelial inflammatory response to LPS.
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- 2019
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36. D-LL-31 in combination with ceftazidime synergistically enhances bactericidal activity and biofilm destruction inBurkholderia pseudomallei
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Jan G. M. Bolscher, Suwimol Taweechaisupapong, Kamran Nazmi, Saharut Wongkaewkhiaw, Surasakdi Wongratanacheewin, Chitchanok Anutrakunchai, Sakawrat Kanthawong, Oral Biochemistry, and Orale Biochemie (OII, ACTA)
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0301 basic medicine ,Melioidosis ,medicine.drug_class ,030106 microbiology ,Antibiotics ,Antimicrobial peptides ,Mutant ,Ceftazidime ,Peptide ,Aquatic Science ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,medicine ,Water Science and Technology ,chemistry.chemical_classification ,biology ,Burkholderia pseudomallei ,Biofilm ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,medicine.disease ,biology.organism_classification ,030104 developmental biology ,chemistry ,bacteria ,SDG 6 - Clean Water and Sanitation ,medicine.drug - Abstract
Melioidosis is a severe disease caused by Burkholderia pseudomallei. The biofilm of B. pseudomallei acquires resistance to several antibiotics and may be related to relapse in melioidosis patients. Here, the killing activity of antimicrobial peptides (LL-37, LL-31) and the D-enantiomers (D-LL-37, D-LL-31) in combination with ceftazidime (CAZ) against B. pseudomallei 1026b, H777 and a biofilm mutant M10, derived from H777 grown under biofilm-stimulating conditions was observed. Using static conditions, D-LL-31 exhibited the strongest killing activity against the three isolates in a dose-dependent manner. IC50 values for D-LL-31 ranged from 1 to 6 µM, for isolates M10, H777, and 1026b, respectively. Moreover, D-LL-31 combined with CAZ synergistically decreased the IC50 values of the peptide and antibiotic and caused also disruption of biofilms of B. pseudomallei 1026b under flow conditions. Thus a combination of D-LL-31 and CAZ may enhance the efficacy of the currently used antibiotic treatments against B. pseudomallei.
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- 2019
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37. Site‐Resolved Observation of Vibrational Energy Transfer Using a Genetically Encoded Ultrafast Heater
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Nediljko Budisa, Jelena Jaric, Carlos G. Acevedo-Rocha, Tobias Baumann, Fabian Schildhauer, Jens Bredenbeck, Erhan Deniz, Berta M. Martins, Jan G. Löffler, Holger Dobbek, Patrick Durkin, Katharina B. Eberl, and Matthias Hauf
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Models, Molecular ,Alanine ,010405 organic chemistry ,Chemistry ,Allosteric regulation ,Infrared spectroscopy ,General Chemistry ,010402 general chemistry ,Internal conversion (chemistry) ,Vibration ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,Energy Transfer ,Chemical physics ,Picosecond ,Time-resolved spectroscopy ,Postsynaptic density ,Excitation - Abstract
Allosteric information transfer in proteins has been linked to distinct vibrational energy transfer (VET) pathways in a number of theoretical studies. Experimental evidence for such pathways, however, is sparse because site-selective injection of vibrational energy into a protein, that is, localized heating, is required for their investigation. Here, we solved this problem by the site-specific incorporation of the non-canonical amino acid β-(1-azulenyl)-l-alanine (AzAla) through genetic code expansion. As an exception to Kasha's rule, AzAla undergoes ultrafast internal conversion and heating after S1 excitation while upon S2 excitation, it serves as a fluorescent label. We equipped PDZ3, a protein interaction domain of postsynaptic density protein 95, with this ultrafast heater at two distinct positions. We indeed observed VET from the incorporation sites in the protein to a bound peptide ligand on the picosecond timescale by ultrafast IR spectroscopy. This approach based on genetically encoded AzAla paves the way for detailed studies of VET and its role in a wide range of proteins.
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- 2019
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38. Ortsaufgelöste Beobachtung von Schwingungsenergietransfer durch ein genetisch codiertes ultraschnelles Heizelement
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Patrick Durkin, Jens Bredenbeck, Berta M. Martins, Katharina B. Eberl, Matthias Hauf, Jelena Jaric, Tobias Baumann, Fabian Schildhauer, Holger Dobbek, Erhan Deniz, Jan G. Löffler, Carlos G. Acevedo-Rocha, and Nediljko Budisa
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Chemistry ,General Medicine - Published
- 2019
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39. Selective cellular probes for mammalian thioredoxin reductase TrxR1: rational design of RX1, a modular 1,2-thiaselenane redox probe
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Oliver Thorn-Seshold, Jan G Felber, Lukas Zeisel, Martin S. Maier, Elias S.J. Arnér, Lena Poczka, Karoline Scholzen, Qing Cheng, and Julia Thorn-Seshold
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chemistry.chemical_classification ,chemistry ,Glutaredoxin ,Thioredoxin reductase ,Chemical biology ,Rational design ,Biophysics ,Selenoprotein ,Thioredoxin ,Molecular probe ,Redox - Abstract
Dynamically driven cellular redox networks power a broad range of physiological cellular processes, and additionally are often dysregulated in various pathologies including cancer and inflammatory diseases. Therefore it is vital to be able to image and to respond to the turnover of the key players in redox homeostasis, to understand their physiological dynamics and to target pathological conditions. However, selective modular probes for assessing specific redox enzyme activities in cells are lacking. Here we report the development of cargo-releasing chemical probes that target the mammalian selenoprotein thioredoxin reductase (TrxR) while being fully resistant to thiol reductants in cells, such as the monothiol glutathione (GSH). We used a rationally oriented cyclic selenenylsulfide as a thermodynamically stable and kinetically reversible trigger that matches the chemistry of the unique TrxR active site, and integrated this reducible trigger into modular probes that release arbitrary cargos upon reduction. The probes' redox biochemistry was evaluated over a panel of thiol-type oxidoreductases, particularly showing remarkable, selenocysteine-dependent sensitivity of the "RX1" probe design to cytosolic TrxR1, with little response to mitochondrial TrxR2. The probe was cross-validated in cells by TrxR1 knockout, selenium starvation, TrxR1 knock-in, and use of TrxR-selective chemical inhibitors, showing excellent TrxR1-dependent cellular performance. The RX1 design is therefore a robust, cellularly-validated, modular probe system for mammalian TrxR1. This sets the stage for in vivo imaging of TrxR1 activity in health and disease; and the thermodynamic and kinetic considerations behind its selectivity mechanism represent a significant advance towards rationally-designed probes for other key players in redox biology.
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- 2021
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40. Interactions via α
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Lech Zareba, Agnieszka Padjas, Stanisława Bazan-Socha, Cezary Marcinkiewicz, Krzysztof Okoń, Jacek Zarychta, Jerzy Dropiński, Sylwia Dziedzina, Bogdan Jakiela, Krzysztof Wojcik, Joanna Zuk, Jan G. Bazan, and Jerzy Soja
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0301 basic medicine ,Male ,Pathology ,T-Lymphocytes ,Cell ,Bronchoalveolar Lavage ,Basement Membrane ,0302 clinical medicine ,Biology (General) ,Lung ,Spectroscopy ,medicine.diagnostic_test ,biology ,Chemistry ,General Medicine ,respiratory system ,Middle Aged ,Computer Science Applications ,medicine.anatomical_structure ,Disease Progression ,Airway Remodeling ,Female ,medicine.symptom ,Integrin alpha2beta1 ,Adult ,medicine.medical_specialty ,QH301-705.5 ,Integrin ,Inflammation ,Bronchi ,Protective Agents ,Article ,Catalysis ,Flow cytometry ,Inorganic Chemistry ,histology ,03 medical and health sciences ,medicine ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,QD1-999 ,Aged ,Basement membrane ,Mucous Membrane ,Organic Chemistry ,biomarkers ,computed tomography ,Asthma ,respiratory tract diseases ,Protein Subunits ,030104 developmental biology ,Bronchoalveolar lavage ,030228 respiratory system ,Solubility ,Reticular connective tissue ,biology.protein ,Airway ,Pulmonary Ventilation ,Tomography, X-Ray Computed - Abstract
Increased airway wall thickness and remodeling of bronchial mucosa are characteristic of asthma and may arise from altered integrin signaling on airway cells. Here, we analyzed the expression of β1-subfamily integrins on blood and airway cells (flow cytometry), inflammatory biomarkers in serum and bronchoalveolar lavage, reticular basement membrane (RBM) thickness and collagen deposits in the mucosa (histology), and airway geometry (CT-imaging) in 92 asthma patients (persistent airflow limitation subtype: n = 47) and 36 controls. Persistent airflow limitation was associated with type-2 inflammation, elevated soluble α2 integrin chain, and changes in the bronchial wall geometry. Both subtypes of asthma showed thicker RBM than control, but collagen deposition and epithelial α1 and α2 integrins staining were similar. Type-I collagen accumulation and RBM thickness were inversely related to the epithelial expression of the α2 integrin chain. Expression of α2β1 integrin on T-cells and eosinophils was not altered in asthma. Collagen I deposits were, however, more abundant in patients with lower α2β1 integrin on blood and airway CD8+ T-cells. Thicker airway walls in CT were associated with lower α2 integrin chain on blood CD4+ T-cells and airway eosinophils. Our data suggest that α2β1 integrin on inflammatory and epithelial cells may protect against airway remodeling advancement in asthma.
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- 2021
41. Durability of La0.20Sr0.25Ca0.45TiO3-based SOFC anodes : identifying sources of degradation in Ni and Pt/ceria co-impregnated fuel electrode microstructures
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John T. S. Irvine, Robert Price, Jan G. Grolig, Ueli Weissen, Andreas Mai, Mark Cassidy, EPSRC, University of St Andrews. School of Chemistry, University of St Andrews. Centre for Designer Quantum Materials, and University of St Andrews. EaSTCHEM
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Materials science ,020209 energy ,Oxide ,chemistry.chemical_element ,Nanoparticle ,02 engineering and technology ,Electrolyte ,E-NDAS ,Catalysis ,chemistry.chemical_compound ,0202 electrical engineering, electronic engineering, information engineering ,General Materials Science ,QD ,Ceramic ,Renewable Energy, Sustainability and the Environment ,General Chemistry ,021001 nanoscience & nanotechnology ,Microstructure ,QD Chemistry ,Anode ,Cerium ,chemistry ,Chemical engineering ,visual_art ,visual_art.visual_art_medium ,0210 nano-technology - Abstract
Funding from the University of St Andrews and HEXIS AG is acknowledged, in addition to the EPSRC Grants: EP/M014304/1 “Tailoring of Microstructural Evolution in Impregnated SOFC Electrodes” and EP/L017008/1 “Capital for Great Technologies”. Solid oxide fuel cells (SOFC) comprising LSM-YSZ/LSM composite cathodes, 6ScSZ electrolytes and La0.20Sr0.25Ca0.45TiO3 (LSCTA−) anode ‘backbone’ microstructures were prepared using thick-film ceramic processing techniques. Activation and decoration of the LSCTA− anode ‘backbone’ with electrocatalytic coatings of cerium-based oxides and metallic Ni or Pt particles was achieved using the technique of catalyst co-impregnation. SOFC containing Ni/CGO, Ni/CeO2 and Pt/CGO impregnated LSCTA anodes were tested up to ∼1000 hours by the Swiss SOFC manufacturer: HEXIS, under realistic operating conditions, including 15 redox, thermo and thermoredox cycles. The voltage degradation rates observed over the entire test period for the SOFC containing the Ni/CGO, Ni/CeO2 and Pt/CGO impregnated LSCTA− anodes were 14.9%, 7.7% and 13.4%, respectively. Post-mortem microscopic analyses indicated that CeO2 formed ubiquitous coatings upon the LSCTA− anode microstructure, allowing retention of a high population density of metallic (Ni) particles, whilst CGO formed ‘islands’ upon the microstructure and some agglomerates within the pores, leading to more facile agglomeration of metallic (Ni and Pt) nanoparticles. Correlation of the post-mortem microscopy with AC impedance analysis revealed that the agglomeration of metallic catalyst resulted in an increase in the high-frequency anode polarisation resistance, whilst agglomeration of the ceria-based component directly resulted in the development of a low-frequency process that may be attributed to combined contributions from gas conversion and chemical capacitance. Postprint Postprint
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- 2021
42. The role of oxygen in submergence-induced petiole elongation in Rumex palustris: in situ measurements of oxygen in petioles of intact plants using micro-electrodes
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Cornelis W. P. M. Blom, Laurentius A. C. J. Voesenek, Jan G. H. M. Rijnders, W. Armstrong, and M. J. Darwent
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Ethylene ,Physiology ,Oxygene ,Hypoxia (environmental) ,chemistry.chemical_element ,Plant Science ,Biology ,biology.organism_classification ,Oxygen ,Petiole (botany) ,chemistry.chemical_compound ,chemistry ,Carbon dioxide ,Botany ,Rumex palustris ,Elongation ,computer ,computer.programming_language - Abstract
In a study on the mechanism of stimulated petiole elongation in submerged plants, oxygen concentrations in petioles of the flood-tolerant plant Rumex palustris were measured with micro-electrodes. Short-term submergence lowered petiole partial oxygen pressure to c. 19 kPa whereas prolonged submergence under continuous illumination depressed oxygen levels to c. 8-12 kPa after 24 h. Oxygen levels in petioles depended on the presence of the lamina, even in submerged conditions, and on available light. In darkness, petiole oxygen levels in submerged plants dropped quickly to values as low as 0.5-4 kPa. It is hypothesized that prolonged submergence in the light is accompanied by a decrease in carbon dioxide in the petiole. Submergence-enhanced petiolar elongation rate was compared with emergent plants. Peak daily elongation rates occurred at the end of the dark period in emergent plants, but in the middle of the light period in submerged plants. We suggest that this shift in daily elongation pattern is induced by dependence of growth on photosynthetically derived oxygen in submerged plants. Implications of reduced oxygen for ethylene production are raised. Levels of 1- aminocyclopropane-1-carboxylic acid synthase and 1-aminocyclopropane-1-carboxylic acid oxidase and ethylene sensitivity are cited as potential factors in hypoxia-induced ethylene release.
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- 2021
43. Patch-Clamp Recordings of Action Potentials From Human Atrial Myocytes: Optimization Through Dynamic Clamp
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Arie O. Verkerk, Gerard A. Marchal, Jan G. Zegers, Makiri Kawasaki, Antoine H. G. Driessen, Carol Ann Remme, Joris R. de Groot, Ronald Wilders, Medical Biology, ACS - Amsterdam Cardiovascular Sciences, Cardiology, Graduate School, ACS - Heart failure & arrhythmias, Cardiothoracic Surgery, ACS - Pulmonary hypertension & thrombosis, and APH - Methodology
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0301 basic medicine ,medicine.medical_specialty ,cardiac myocytes ,left atrial appendage ,030204 cardiovascular system & hematology ,Apamin ,patch clamp ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,action potential ,Nifedipine ,Internal medicine ,inward rectifier potassium current ,medicine ,Repolarization ,Myocyte ,Pharmacology (medical) ,Patch clamp ,human ,drug testing ,Ion channel ,Original Research ,Pharmacology ,Chemistry ,Inward-rectifier potassium ion channel ,lcsh:RM1-950 ,030104 developmental biology ,Clamp ,lcsh:Therapeutics. Pharmacology ,dynamic clamp ,Cardiology ,medicine.drug - Abstract
Introduction: Atrial fibrillation (AF) is the most common cardiac arrhythmia. Consequently, novel therapies are being developed. Ultimately, the impact of compounds on the action potential (AP) needs to be tested in freshly isolated human atrial myocytes. However, the frequent depolarized state of these cells upon isolation seriously hampers reliable AP recordings.Purpose: We assessed whether AP recordings from single human atrial myocytes could be improved by providing these cells with a proper inward rectifier K+ current (IK1), and consequently with a regular, non-depolarized resting membrane potential (RMP), through “dynamic clamp”.Methods: Single myocytes were enzymatically isolated from left atrial appendage tissue obtained from patients with paroxysmal AF undergoing minimally invasive surgical ablation. APs were elicited at 1 Hz and measured using perforated patch-clamp methodology, injecting a synthetic IK1 to generate a regular RMP. The injected IK1 had strong or moderate rectification. For comparison, a regular RMP was forced through injection of a constant outward current. A wide variety of ion channel blockers was tested to assess their modulatory effects on AP characteristics.Results: Without any current injection, RMPs ranged from −9.6 to −86.2 mV in 58 cells. In depolarized cells (RMP positive to −60 mV), RMP could be set at −80 mV using IK1 or constant current injection and APs could be evoked upon stimulation. AP duration differed significantly between current injection methods (p < 0.05) and was shortest with constant current injection and longest with injection of IK1 with strong rectification. With moderate rectification, AP duration at 90% repolarization (APD90) was similar to myocytes with regular non-depolarized RMP, suggesting that a synthetic IK1 with moderate rectification is the most appropriate for human atrial myocytes. Importantly, APs evoked using each injection method were still sensitive to all drugs tested (lidocaine, nifedipine, E-4031, low dose 4-aminopyridine, barium, and apamin), suggesting that the major ionic currents of the atrial cells remained functional. However, certain drug effects were quantitatively dependent on the current injection approach used.Conclusion: Injection of a synthetic IK1 with moderate rectification facilitates detailed AP measurements in human atrial myocytes. Therefore, dynamic clamp represents a promising tool for testing novel antiarrhythmic drugs.
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- 2021
44. Selective, Modular Probes for Thioredoxins Enabled by Rational Tuning of a Unique Disulfide Structure Motif
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Karoline Scholzen, Julia Thorn-Seshold, Sander Busker, Katja Becker, Elias S.J. Arnér, Lena Poczka, Jan G Felber, Lukas Zeisel, Martin S. Maier, Oliver Thorn-Seshold, Christina Brandstädter, and Ulrike Theisen
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chemistry.chemical_classification ,Effector ,business.industry ,Disulfide bond ,Dithiol ,General Chemistry ,Modular design ,Biochemistry ,Redox ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Enzyme ,chemistry ,Protein regulation ,Biophysics ,Thioredoxin ,business - Abstract
Specialised cellular networks of oxidoreductases coordinate the dithiol/disulfide-exchange reactions that control metabolism, protein regulation, and redox homeostasis. For probes to be selective for redox enzymes and effector proteins (nM to µM concentrations), they must also be able to resist nonspecific triggering by the ca. 50 mM background of non-catalytic cellular monothiols. However, no such selective reduction-sensing systems have yet been established. Here, we used rational structural design to independently vary thermodynamic and kinetic aspects of disulfide stability, creating a series of unusual disulfide reduction trigger units designed for stability to monothiols. We integrated the motifs into modular series of fluorogenic probes that release and activate an arbitrary chemical cargo upon reduction, and compared their performance to that of the literature-known disulfides. The probes were comprehensively screened for biological stability and selectivity against a range of redox effector proteins and enzymes. This design process delivered the first disulfide probes with excellent stability to monothiols, yet high selectivity for the key redox-active protein effector, thioredoxin. We anticipate that further applications of these novel disulfide triggers will deliver unique probes targeting cellular thioredoxins. We also anticipate that further tuning following this design paradigm will deliver redox probes for other important dithiol-manifold redox proteins, that will be useful in revealing the hitherto hidden dynamics of endogenous cellular redox systems.
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- 2021
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45. Submission for Special Issue: The Role of Platelet Activation in the Pathophysiology of HIV, Tuberculosis, and Pneumococcal Disease. Bedaquiline Suppresses ADP-Mediated Activation of Human Platelets In Vitro via Interference With Phosphatidylinositol 3-Kinase
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Gregory R. Tintinger, Annette J. Theron, Helen C. Steel, Moloko C. Cholo, Jan G. Nel, Charles Feldman, and Ronald Anderson
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0301 basic medicine ,Male ,phosphatidylinositol 3-kinase ,Platelet Aggregation ,Antitubercular Agents ,HIV Infections ,030204 cardiovascular system & hematology ,Pharmacology ,Wortmannin ,chemistry.chemical_compound ,Phosphatidylinositol 3-Kinases ,0302 clinical medicine ,Immunology and Allergy ,Platelet ,bedaquiline ,Diarylquinolines ,Estrenes ,Phosphorylation ,Original Research ,Phosphoinositide-3 Kinase Inhibitors ,Kinase ,adenosine-5′-triphosphate ,Platelet-Rich Plasma ,Thrombin ,Middle Aged ,Pyrrolidinones ,Adenosine Diphosphate ,Long QT Syndrome ,P-Selectin ,wortmannin ,platelets ,Female ,medicine.drug ,lcsh:Immunologic diseases. Allergy ,Adult ,Immunology ,Fluorescence spectrometry ,Pneumococcal Infections ,calcium fluxes ,03 medical and health sciences ,Young Adult ,CD62P ,Calcium flux ,medicine ,Humans ,Tuberculosis ,Platelet activation ,Calcium Signaling ,Dose-Response Relationship, Drug ,Platelet Activation ,030104 developmental biology ,chemistry ,15-Hydroxy-11 alpha,9 alpha-(epoxymethano)prosta-5,13-dienoic Acid ,Bedaquiline ,lcsh:RC581-607 ,Protein Processing, Post-Translational ,Proto-Oncogene Proteins c-akt - Abstract
Although bedaquiline has advanced the treatment of multidrug-resistant tuberculosis (TB), concerns remain about the cardiotoxic potential of this agent, albeit by unexplored mechanisms. Accordingly, we have investigated augmentation of the reactivity of human platelets in vitro as a potential mechanism of bedaquiline-mediated cardiotoxicity. Platelet-rich plasma (PRP) or isolated cells prepared from the blood of healthy, adult humans were treated with bedaquiline (0.625–10 µg/ml), followed by activation with adenosine 5’-diphosphate (ADP), thrombin or the thromboxane A2 receptor agonist (U46619). Expression of platelet CD62P (P-selectin), platelet aggregation, Ca2+ fluxes and phosphorylation of Akt1 were measured using flow cytometry, spectrophotometry, fluorescence spectrometry, and by ELISA procedures, respectively. Exposure to bedaquiline caused dose-related inhibition of ADP-activated, but not thrombin- or U46619-activated, expression of CD62P by platelets, achieving statistical significance at a threshold concentration of 5 µg/ml and was paralleled by inhibition of aggregation and Ca2+ mobilization. These ADP-selective inhibitory effects of bedaquiline on platelet activation were mimicked by wortmannin, an inhibitor of phosphatidylinositol 3-kinase (PI3-K), implicating PI3-K as being a common target of both agents, a contention that was confirmed by the observed inhibitory effects of bedaquiline on the phosphorylation of Akt1 following activation of platelets with ADP. These apparent inhibitory effects of bedaquiline on the activity of PI3-K may result from the secondary cationic amphiphilic properties of this agent. If operative in vivo, these anti-platelet effects of bedaquiline may contribute to ameliorating the risk of TB-associated cardiovascular disease, but this remains to be explored in the clinical setting.
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- 2021
46. Micro-Raman detection of nuclear membrane lipid fluctuations in senescent epithelial breast cancer cells
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Mariani, Melissa M., Maccoux, Lindsey J., Matthaus, Christian, Diem, Max, Hengstler, Jan G., and Deckert, Volker
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Breast cancer -- Health aspects ,Cancer cells -- Chemical properties ,Cancer cells -- Health aspects ,Raman effect -- Research ,Membranes (Biology) -- Chemical properties ,Membranes (Biology) -- Identification and classification ,Lipids -- Chemical properties ,Lipids -- Identification and classification ,Epithelial cells -- Health aspects ,Epithelial cells -- Chemical properties ,Chemistry - Abstract
Originally identified in cultured cells, oncogenic cellular senescence is a growth-arrest mechanism which may inhibit tumor development by limiting the ability of cells to divide. However, literature shows that these cells secrete tumor-inducing and tumor-suppressing proteins leading to poor prognosis. Understanding the progression of oncogenic cellular senescence and associated mechanisms provides important implications for improving tumorigenesis therapeutic treatments. Micro-Raman spectroscopic imaging has grown in popularity as an imaging technique compared to the standard imaging predecessors and can be attributed to its numerous benefits such as no sample perturbation and the provision of direct chemical information. Through the use of label-free micro-Raman spectroscopy, control and senescent cells were noninvasively imaged. Resulting spectral images were processed using chemometric techniques, and average nuclei spectra from each sample set were compared. In turn, changes in the -cis and -trans unsaturated lipid isomer content were found to differ among proliferating and senescent cells. This may lead to increased nuclear fluidity and may contribute to the inability of senescent cells to complete the cell cycle. In the tumor environment, this detected increase in nuclear envelope fluidity could lead to downstream gene expression modifications and increased nucleo-cytoplasmic RNA translocation. Understanding nuclear envelope fluidity could provide insight into secretory profiles of senescent cells and their role in carcinogenesis, meriting further investigation into novel therapeutic technique development for oncogenic cellular senescence. 10.1021/ac1006987
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- 2010
47. Epigenomic and transcriptional profiling identifies impaired glyoxylate detoxification in NAFLD as a risk factor for hyperoxaluria
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Gilles Gasparoni, Rosemarie Marchan, Heiko Hayen, Philipp Gabrys, Daniel Seehofer, Ahmed Ghallab, Thomas S. Weiss, Kathrin Gianmoena, Peter Boor, Katharina Grgas, Georg Damm, Tobias S. Schiergens, Eduardo Salido, Jörg Reinders, Patricio Godoy, Cristina Cadenas, Jörn Walter, Karolina Edlund, Clivia Lisowski, Nina Gasparoni, Alexander Schriewer, Karl Nordström, Christian A. Hudert, Philip Rosenstiel, Maren Falk-Paulsen, Jan G. Hengstler, Adelina Jashari, Manga Motrapu, Hans-Joachim Anders, Peter L.M. Jansen, RS: FSE MaCSBio, Maastricht Centre for Systems Biology, RS: FHML MaCSBio, and RS: FPN MaCSBio
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CHRONIC KIDNEY-DISEASE ,QH301-705.5 ,Glyoxylate cycle ,General Biochemistry, Genetics and Molecular Biology ,Oxalate ,LDHA ,Transcriptome ,PRIMARY HEPATOCYTES ,hydroxyproline ,glucagon ,chromatin accessibility ,gene expression ,oxalate ,DNA methylation ,HAO1 ,glyoxylate ,AGXT ,glycolate ,chemistry.chemical_compound ,MOUSE MODELS ,medicine ,GLYCOLATE OXIDASE ,Biology (General) ,Epigenomics ,FATTY LIVER-DISEASE ,GENE-EXPRESSION ,Kidney ,business.industry ,IN-VITRO ,medicine.disease ,medicine.anatomical_structure ,chemistry ,CARDIOVASCULAR-DISEASE ,Cancer research ,FACTOR-BINDING ,Kidney stones ,Steatosis ,WEB-SERVER ,business ,Kidney disease - Abstract
Summary Epigenetic modifications (e.g. DNA methylation) in NAFLD and their contribution to disease progression and extrahepatic complications are poorly explored. Here, we use an integrated epigenome and transcriptome analysis of mouse NAFLD hepatocytes and identify alterations in glyoxylate metabolism, a pathway relevant in kidney damage via oxalate release—a harmful waste product and kidney stone-promoting factor. Downregulation and hypermethylation of alanine-glyoxylate aminotransferase (Agxt), which detoxifies glyoxylate, preventing excessive oxalate accumulation, is accompanied by increased oxalate formation after metabolism of the precursor hydroxyproline. Viral-mediated Agxt transfer or inhibiting hydroxyproline catabolism rescues excessive oxalate release. In human steatotic hepatocytes, AGXT is also downregulated and hypermethylated, and in NAFLD adolescents, steatosis severity correlates with urinary oxalate excretion. Thus, this work identifies a reduced capacity of the steatotic liver to detoxify glyoxylate, triggering elevated oxalate, and provides a mechanistic explanation for the increased risk of kidney stones and chronic kidney disease in NAFLD patients.
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- 2021
48. High mercury sorption in low organic matter aquifer material using column experiments
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Harald Biester, Jan G. Wiederhold, Jan Pietrucha, Stephan M. Kraemer, Carina Esser, David S. McLagan, and Lorenz Schwab
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chemistry.chemical_classification ,geography ,geography.geographical_feature_category ,chemistry ,Environmental chemistry ,Environmental science ,chemistry.chemical_element ,Aquifer ,Organic matter ,Sorption ,Column (database) ,Mercury (element) - Published
- 2021
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49. Intravital Dynamic and Correlative Imaging of Mouse Livers Reveals Diffusion-Dominated Canalicular and Flow-Augmented Ductular Bile Flux
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Georgia Guenther, Brigitte Begher-Tibbe, Adrian Friebel, Amruta Damle-Vartak, Nachiket Vartak, Florian Joly, Fabian Geisler, Simone Jörs, Jörns Fickel, Dirk Drasdo, Gudrun Wibbelt, Jan G. Hengstler, Ahmed Ghallab, Heribert Hofer, Stefan Hoehme, Irene E. Vignon-Clementel, Kasimir Wansing, Christian Hedberg, Marie Rosselin, Noemie Boissier, and Peter L.M. Jansen
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0301 basic medicine ,mouse livers ,Gastroenterology and Hepatology ,Bone canaliculus ,digestive system ,Bile flow ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Gastroenterologi ,medicine ,small-molecule flux ,Fluorescein ,Hepatology ,Chemistry ,imaging ,500 Naturwissenschaften und Mathematik::570 Biowissenschaften ,Biologie::570 Biowissenschaften ,Biologie ,ddc ,Interlobular bile ducts ,030104 developmental biology ,medicine.anatomical_structure ,Hepatocyte ,Biophysics ,Diffusive flux ,030211 gastroenterology & hepatology ,Correlative imaging ,Concentration gradient - Abstract
Small-molecule flux in tissue-microdomains is essential for organ function, but knowledge of this process is scant due to the lack of suitable methods. We developed two independent techniques that allow the quantification of advection (flow) and diffusion in individual bile canaliculi and in interlobular bile ducts of intact livers in living mice, namely Fluorescence Loss After Photoactivation (FLAP) and Intravital Arbitrary Region Image Correlation Spectroscopy (IVARICS). The results challenge the prevailing 'mechano-osmotic' theory of canalicular bile flow. After active transport across hepatocyte membranes bile acids are transported in the canaliculi primarily by diffusion. Only in the interlobular ducts, diffusion is augmented by regulatable advection. Photoactivation of fluorescein bis-(5-carboxymethoxy-2-nitrobenzyl)-ether (CMNB-caged fluorescein) in entire lobules demonstrated the establishment of diffusive gradients in the bile canalicular network and the sink function of interlobular ducts. In contrast to the bile canalicular network, vectorial transport was detected and quantified in the mesh of interlobular bile ducts. In conclusion, the liver consists of a diffusion dominated canalicular domain, where hepatocytes secrete small molecules and generate a concentration gradient and a flow-augmented ductular domain, where regulated water influx creates unidirectional advection that augments the diffusive flux.
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- 2021
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50. mTORC1 and mTORC2 Converge on the Arp2/3 Complex to Promote Kras G12D-Induced Acinar-to-Ductal Metaplasia and Early Pancreatic Carcinogenesis
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Zhiheng Zhang, Jörg Kleeff, Nadja Maeritz, Susanne Raulefs, Xiaoping Zou, Helmut Friess, Christina Ludwig, Dianbo Yao, Kathleen Schuck, Metello Innocenti, Yamin Zhao, Shanshan Shen, Vivien Tissen, Achim Krüger, Christoph W. Michalski, Jan G. D’Haese, Rob A. van der Kammen, Carsten Jäger, Benjamin Schoeps, Anna Melissa Schlitter, Bo Kong, Zhao, Y, Schoeps, B, Yao, D, Zhang, Z, Schuck, K, Tissen, V, Jäger, C, Schlitter, A, van der Kammen, R, Ludwig, C, D'Haese, J, Raulefs, S, Maeritz, N, Shen, S, Zou, X, Krüger, A, Kleeff, J, Michalski, C, Friess, H, Innocenti, M, and Kong, B
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0301 basic medicine ,ADM ,Arp2/3 complex ,macromolecular substances ,mTORC1 ,mTORC2 ,Filamentous actin ,Rictor ,03 medical and health sciences ,0302 clinical medicine ,Neoplastic transformation ,Mechanistic target of rapamycin ,PI3K/AKT/mTOR pathway ,Hepatology ,biology ,Chemistry ,Gastroenterology ,PDAC ,Actin cytoskeleton ,Cell biology ,Arp2/3 Complex ,030104 developmental biology ,Rptor ,biology.protein ,mTOR ,030211 gastroenterology & hepatology ,biological phenomena, cell phenomena, and immunity - Abstract
Background & Aims Oncogenic KrasG12D induces neoplastic transformation of pancreatic acinar cells through acinar-to-ductal metaplasia (ADM), an actin-based morphogenetic process, and drives pancreatic ductal adenocarcinoma (PDAC). mTOR (mechanistic target of rapamycin kinase) complex 1 (mTORC1) and 2 (mTORC2) contain Rptor and Rictor, respectively, and are activated downstream of KrasG12D, thereby contributing to PDAC. Yet, whether and how mTORC1 and mTORC2 impact on ADM and the identity of the actin nucleator(s) mediating such actin rearrangements remain unknown. Methods A mouse model of inflammation-accelerated KrasG12D-driven early pancreatic carcinogenesis was used. Rptor, Rictor, and Arpc4 (actin-related protein 2/3 complex subunit 4) were conditionally ablated in acinar cells to deactivate the function of mTORC1, mTORC2 and the actin-related protein (Arp) 2/3 complex, respectively. Results We found that mTORC1 and mTORC2 are markedly activated in human and mouse ADM lesions, and cooperate to promote KrasG12D-driven ADM in mice and in vitro. They use the Arp2/3 complex as a common downstream effector to induce the remodeling the actin cytoskeleton leading to ADM. In particular, mTORC1 regulates the translation of Rac1 (Rac family small GTPase 1) and the Arp2/3-complex subunit Arp3, whereas mTORC2 activates the Arp2/3 complex by promoting Akt/Rac1 signaling. Consistently, genetic ablation of the Arp2/3 complex prevents KrasG12D-driven ADM in vivo. In acinar cells, the Arp2/3 complex and its actin-nucleation activity mediated the formation of a basolateral actin cortex, which is indispensable for ADM and pre-neoplastic transformation. Conclusions Here, we show that mTORC1 and mTORC2 attain a dual, yet nonredundant regulatory role in ADM and early pancreatic carcinogenesis by promoting Arp2/3 complex function. The role of Arp2/3 complex as a common effector of mTORC1 and mTORC2 fills the gap between oncogenic signals and actin dynamics underlying PDAC initiation.
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- 2021
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