75 results on '"Jonas E"'
Search Results
2. Extent of Ore Prereduction in Pilot-scale Production of High Carbon Ferromanganese
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Jonas E Gjøvik, Eli Ringdalen, Merete Tangstad, Maria Wallin, Heiko Gaertner, and Tichaona Mukono
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History ,Polymers and Plastics ,Metallurgy ,Energy balance ,chemistry.chemical_element ,Slag ,Coke ,Energy consumption ,Endothermic process ,Ferromanganese ,Industrial and Manufacturing Engineering ,Boudouard reaction ,chemistry ,visual_art ,visual_art.visual_art_medium ,Business and International Management ,Carbon - Abstract
Three pilot-scale experiments have been conducted at SINTEF/NTNU in a 440 kVA AC electric furnace to demonstrate the process operation, energy requirements and CO2 emissions in the production of high carbon ferromanganese alloys. Comilog, UMK and Nchwaning (Assmang) ores blended with other materials, such as sinter and flux, thus achieving different charge mixtures have been utilized in the experiments. In the prereduction zone, higher manganese oxides in the ore are reduced to MnO through solid-gas exothermic reactions and at a temperature around 800oC, the unwanted endothermic Boudouard reaction is also active. As such, the total coke and energy consumption is highly dependent on if the prereduction occurs by CO gas or solid C. The pilot furnace has been excavated after each experiment and the extent of prereduction of the ore has been investigated by collecting samples from specific regions in the prereduction zone. In addition, material, and energy balance calculations for the three pilot experiments have been calculated using HSC Chemistry software. The HSC material and energy balance calculations have shown that the slag/alloy ratios, metal analyses, carbon consumption and the overall energy consumption are mainly affected by the composition of the charge mixtures. The relationship between the specific carbon consumption, the off-gas CO2/(CO2+CO) ratio and energy consumption to produce 1 tonne of HCFeMn alloy is discussed for the three different pilot-scale scenarios.
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- 2021
3. Pretreatment of Manganese Ores in Different Gas-Atmospheres- a Method to Reduce Energy Consumption and Co2 Emissions in Mn-Alloy Production
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Eli Ringdalen, Jonas E Gjøvik, Trine Asklund Larssen, and Merete Tangstad
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Argon ,Materials science ,Metallurgy ,Alloy ,chemistry.chemical_element ,Mn alloy ,Manganese ,Energy consumption ,engineering.material ,Sustainable energy ,Atmosphere ,chemistry ,engineering ,Gas composition - Abstract
Pretreatment of manganese ores with sustainable energy sources has a potential for reducing energy consumption and CO2 emissions in manganese alloy production. Technologies to obtain this are currently being developed in EU H2020 project PreMa. Pretreatment of industrial manganese ores with different gas composition have been investigated experimentally in 1 kg scale with ore sizes used in industry. Degree of prereduction and fines formation varied with ore sources as well as with gas atmosphere and temperature. By heating in Argon, air, or CO2 gas the Mn-oxides were reduced to Mn2O3. Further reduction towards and down to MnO was only obtained when CO-containing gas was used. On-set temperatures for the different reactions are discussed
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- 2021
4. Carbide formation and accumulation in SiMn furnaces
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Eli Ringdalen, Jonas E Gjøvik, and Vincent Canaguier
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History ,Titanium carbide ,Materials science ,Polymers and Plastics ,Precipitation (chemistry) ,Metallurgy ,Alloy ,chemistry.chemical_element ,Slag ,Electron microprobe ,engineering.material ,Industrial and Manufacturing Engineering ,Carbide ,chemistry.chemical_compound ,chemistry ,visual_art ,Silicon carbide ,visual_art.visual_art_medium ,engineering ,Business and International Management ,Titanium - Abstract
Recent excavations of Norwegian medium size SiMn furnaces have revealed spectacular amounts of carbide-rich materials accumulating on the sidewalls. In an excavated furnace from Eramet Kvinesdal, producing a 19%Si silicomanganese alloy prior shutdown, the sidewall materials contained silicon carbide in addition to SiMn alloy, slag and carbon. This contrasts with the large amounts of titanium carbides found in a furnace from Ferroglobe (Glencore then) which was producing 16%Si silicomanganese. The significant volume occupied by the carbides is likely to affect the flow of materials as well as furnace operation. It is therefore meaningful to understand how and when those carbides can form, especially concerning titanium carbide given the low content of titanium (about 0.3%) in the raw materials. The present study investigates the conditions under which TiC and SiC can appear in the furnace. Slag, alloy, and gas compositions were chosen to mimic industrial charges and were reacted between 1450 and 1650 °C. The reacted samples were further analysed by electron probe microanalysis with wavelength-dispersive X-ray spectroscopy (EPMA/WDS). Thermodynamic calculations were conducted using FactSage 8.0 and used for further reflection. The results indicate that TiC was formed by both precipitation and chemical reaction.
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- 2021
5. Low convergent validity of [11C]raclopride binding in extrastriatal brain regions : A PET study of within-subject correlations with [11C]FLB 457
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Tove Freiburghaus, Simon Cervenka, Johan Lundberg, Pontus Plavén-Sigray, Jonas E Svensson, Granville J. Matheson, and Lars Farde
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Cognitive Neuroscience ,Dopamine ,Within person ,050105 experimental psychology ,11c raclopride ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Healthy control ,Validation ,Radioligand ,medicine ,0501 psychology and cognitive sciences ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Raclopride ,medicine.diagnostic_test ,Chemistry ,05 social sciences ,Neurosciences ,Binding potential ,Extrastriatal ,PET ,Neurology ,Convergent validity ,Positron emission tomography ,D2-receptor ,030217 neurology & neurosurgery ,Neurovetenskaper ,medicine.drug - Abstract
Dopamine D2 receptors (D2-R) in extrastriatal brain regions are of high interest for research in a wide range of psychiatric and neurologic disorders. Pharmacological competition studies and test-retest experiments have shown high validity and reliability of the positron emission tomography (PET) radioligand [11C]FLB 457 for D2-R quantification in extrastriatal brain regions. However, this radioligand is not available at most research centres. Instead, the medium affinity radioligand [11C]raclopride, which has been extensively validated for quantification of D2-R in the high-density region striatum, has been applied also in studies on extrastriatal D2-R. Recently, the validity of this approach has been questioned by observations of low occupancy of [11C]raclopride in extrastriatal regions in a pharmacological competition study with quetiapine. Here, we utilise a data set of 16 healthy control subjects examined with both [11C]raclopride and [11C]FLB 457 to assess the correlation in binding potential (BPND) in extrastriatal brain regions. BPND was quantified using the simplified reference tissue model with cerebellum as reference region. The rank order of mean regional BPND values were similar for both radioligands, and corresponded to previously reported data, both post-mortem and using PET. Nevertheless, weak to moderate within-subject correlations were observed between [11C]raclopride and [11C]FLB 457 BPND extrastriatally (Pearson's R: 0.30 - 0.56), in contrast to very strong correlations between repeated [11C]FLB 457 measurements (Pearson's R: 0.82 - 0.98). In comparison, correlations between repeated [11C]raclopride measurements were low to moderate (Pearson's R: 0.28 - 0.75). These results are likely related to low signal to noise ratio of [11C]raclopride in extrastriatal brain regions, and further strengthen the recommendation that extrastriatal D2-R measures obtained with [11C]raclopride should be interpreted with caution.
- Published
- 2021
6. Local and systemic therapy of recurrent ependymoma in children and adolescents: short- and long-term result of the E-HIT-REZ 2005 study
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Jonas E. Adolph, Denise Obrecht, Martin Mynarek, Julia Zeller, Katja von Hoff, Andreas Faldum, Monika Warmuth-Metz, Beate Timmermann, Stephan Tippelt, Torsten Pietsch, Robert Kwiecien, Michael C. Frühwald, Stefan M. Pfister, Udo Bode, Jürgen Kraus, Stefan Rutkowski, Ruth Mikasch, Rolf-Dieter Kortmann, Ulrich Schüller, Olaf Witt, Gudrun Fleischhack, Kristian W. Pajtler, Hendrik Witt, and Brigitte Bison
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Re-Irradiation ,Ependymoma ,Cancer Research ,medicine.medical_specialty ,Chemotherapy ,Temozolomide ,business.industry ,medicine.medical_treatment ,Medizin ,medicine.disease ,Chemotherapy regimen ,Systemic therapy ,Gastroenterology ,Trofosfamide ,Radiation therapy ,chemistry.chemical_compound ,Oncology ,chemistry ,Internal medicine ,Medicine ,Neurology (clinical) ,business ,medicine.drug - Abstract
Background Survival in recurrent ependymomas in children and adolescents mainly depends on the extent of resection. Studies on repeated radiotherapy and chemotherapy at relapse have shown conflicting results. Methods Using data from the German multi-center E-HIT-REZ-2005 study, we examined the role of local therapy and the efficacy of chemotherapy with blockwise temozolomide (TMZ) in children and adolescents with recurrent ependymomas. Results Fifty-three patients with a median age of 6.9 years (1.25–25.4) at first recurrence and a median follow-up time of 36 months (2–115) were recruited. Gross- and near-total resection (GTR/NTR) were achieved in 34 (64.2%) patients and associated with a markedly improved 5-year overall survival (OS) of 48.7% vs. 5.3% in less than GTR/NTR. Radiotherapy showed no improvement in OS following complete resection (OS: 70 (CI: 19.9–120.1) vs. 95 (CI: 20.7–169.4) months), but an advantage was found in less than GTR/NTR (OS: 22 (CI: 12.7–31.3) vs. 7 (CI: 0–15.8) months). Following the application of TMZ, disease progression was observed in most evaluable cases (18/21). A subsequent change to oral etoposide and trofosfamide showed no improved response. PF-A EPN were most abundant in relapses (n = 27). RELA-positive EPN (n = 5) had a 5-year OS of 0%. Conclusion The extent of resection is the most important predictor of survival at relapse. Focal re-irradiation is a useful approach if complete resection cannot be achieved, but no additional benefit was seen after GTR/NTR. Longer-term disease stabilization (>6 months) mediated by TMZ occurred in a small number of cases (14.3%).
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- 2021
7. Improved Configurational Sampling Protocol for Large Atmospheric Molecular Clusters
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Haide Wu, Morten Engsvang, Yosef Knattrup, Jakub Kubečka, and Jonas Elm
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Chemistry ,QD1-999 - Published
- 2023
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8. Computational Tools for Handling Molecular Clusters: Configurational Sampling, Storage, Analysis, and Machine Learning
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Jakub Kubečka, Vitus Besel, Ivo Neefjes, Yosef Knattrup, Theo Kurtén, Hanna Vehkamäki, and Jonas Elm
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Chemistry ,QD1-999 - Published
- 2023
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9. Toward Modeling the Growth of Large Atmospheric Sulfuric Acid–Ammonia Clusters
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Morten Engsvang, Jakub Kubečka, and Jonas Elm
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Chemistry ,QD1-999 - Published
- 2023
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10. Metabolic Derangement of Essential Transition Metals and Potential Antioxidant Therapies
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Adriana Fontes, Adrian T. Jauch, Judith Sailer, Jonas Engler, Anabela Marisa Azul, and Hans Zischka
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transition metals ,iron ,copper ,zinc ,manganese ,oxidative stress ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Essential transition metals have key roles in oxygen transport, neurotransmitter synthesis, nucleic acid repair, cellular structure maintenance and stability, oxidative phosphorylation, and metabolism. The balance between metal deficiency and excess is typically ensured by several extracellular and intracellular mechanisms involved in uptake, distribution, and excretion. However, provoked by either intrinsic or extrinsic factors, excess iron, zinc, copper, or manganese can lead to cellular damage upon chronic or acute exposure, frequently attributed to oxidative stress. Intracellularly, mitochondria are the organelles that require the tightest control concerning reactive oxygen species production, which inevitably leaves them to be one of the most vulnerable targets of metal toxicity. Current therapies to counteract metal overload are focused on chelators, which often cause secondary effects decreasing patients’ quality of life. New therapeutic options based on synthetic or natural antioxidants have proven positive effects against metal intoxication. In this review, we briefly address the cellular metabolism of transition metals, consequences of their overload, and current therapies, followed by their potential role in inducing oxidative stress and remedies thereof.
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- 2024
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11. Adult Neurogenesis of the Medial Geniculate Body: In Vitro and Molecular Genetic Analyses Reflect the Neural Stem Cell Capacity of the Rat Auditory Thalamus over Time
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Jonas Engert, Bjoern Spahn, Sabine Sommerer, Totta Ehret Kasemo, Stephan Hackenberg, Kristen Rak, and Johannes Voelker
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auditory thalamus ,neural stem cells ,mRNA abundance ,adult neurogenesis ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Neural stem cells (NSCs) have been recently identified in the neonatal rat medial geniculate body (MGB). NSCs are characterized by three cardinal features: mitotic self-renewal, formation of progenitors, and differentiation into all neuroectodermal cell lineages. NSCs and the molecular factors affecting them are particularly interesting, as they present a potential target for treating neurologically based hearing disorders. It is unclear whether an NSC niche exists in the rat MGB up to the adult stage and which neurogenic factors are essential during maturation. The rat MGB was examined on postnatal days 8, 12, and 16, and at the adult stadium. The cardinal features of NSCs were detected in MGB cells of all age groups examined by neurosphere, passage, and differentiation assays. In addition, real-time quantitative polymerase chain reaction arrays were used to compare the mRNA levels of 84 genes relevant to NSCs and neurogenesis. In summary, cells of the MGB display the cardinal features of NSCs up to the adult stage with a decreasing NSC potential over time. Neurogenic factors with high importance for MGB neurogenesis were identified on the mRNA level. These findings should contribute to a better understanding of MGB neurogenesis and its regenerative capacity.
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- 2024
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12. Conformational analysis and interaction of the Staphylococcus aureus transmembrane peptidase AgrB with its AgrD propeptide substrate
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Philip Bardelang, Ewan J. Murray, Isobel Blower, Sara Zandomeneghi, Alice Goode, Rohanah Hussain, Divya Kumari, Giuliano Siligardi, Katsuaki Inoue, Jeni Luckett, James Doutch, Jonas Emsley, Weng C. Chan, Philip Hill, Paul Williams, and Boyan B. Bonev
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quorum sensing ,AgrB ,AgrD ,Staphylococcus aureus ,membrane protein structure ,molecular dynamics simulations ,Chemistry ,QD1-999 - Abstract
Virulence gene expression in the human pathogen, S. aureus is regulated by the agr (accessory gene regulator) quorum sensing (QS) system which is conserved in diverse Gram-positive bacteria. The agr QS signal molecule is an autoinducing peptide (AIP) generated via the initial processing of the AgrD pro-peptide by the transmembrane peptidase AgrB. Since structural information for AgrB and AgrBD interactions are lacking, we used homology modelling and molecular dynamics (MD) annealing to characterise the conformations of AgrB and AgrD in model membranes and in solution. These revealed a six helical transmembrane domain (6TMD) topology for AgrB. In solution, AgrD behaves as a disordered peptide, which binds N-terminally to membranes in the absence and in the presence of AgrB. In silico, membrane complexes of AgrD and dimeric AgrB show non-equivalent AgrB monomers responsible for initial binding and for processing, respectively. By exploiting split luciferase assays in Staphylococcus aureus, we provide experimental evidence that AgrB interacts directly with itself and with AgrD. We confirmed the in vitro formation of an AgrBD complex and AIP production after Western blotting using either membranes from Escherichia coli expressing AgrB or with purified AgrB and T7-tagged AgrD. AgrB and AgrD formed stable complexes in detergent micelles revealed using synchrotron radiation CD (SRCD) and Landau analysis consistent with the enhanced thermal stability of AgrB in the presence of AgrD. Conformational alteration of AgrB following provision of AgrD was observed by small angle X-ray scattering from proteodetergent micelles. An atomistic description of AgrB and AgrD has been obtained together with confirmation of the AgrB 6TMD membrane topology and existence of AgrBD molecular complexes in vitro and in vivo.
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- 2023
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13. Cyclisation Increases the Stability of the Sea Anemone Peptide APETx2 but Decreases Its Activity at Acid-Sensing Ion Channel 3
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Lachlan D. Rash, Paul F. Alewood, Jonas E. Jensen, Glenn F. King, Andreas Brust, and Mehdi Mobli
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truncation ,Magnetic Resonance Spectroscopy ,sea anemone ,medicine.medical_treatment ,Molecular Sequence Data ,Pharmaceutical Science ,Peptide ,Biology ,Article ,Structure-Activity Relationship ,Xenopus laevis ,Cnidarian Venoms ,Drug Stability ,Drug Discovery ,ASIC3 ,medicine ,Structure–activity relationship ,Animals ,Amino Acid Sequence ,lcsh:QH301-705.5 ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Peptide sequence ,Ion channel ,Acid-sensing ion channel ,chemistry.chemical_classification ,Protease ,APETx2 ,stability ,Trypsin ,peptide ,cyclisation ,Rats ,Acid Sensing Ion Channels ,+<%2Fstrong>peptide%22"> peptide ,+<%2Fstrong>APETx2%22"> APETx2 ,lcsh:Biology (General) ,Biochemistry ,chemistry ,Acid Sensing Ion Channel Blockers ,Cyclization ,Linker ,medicine.drug - Abstract
APETx2 is a peptide isolated from the sea anemone Anthopleura elegantissima. It is the most potent and selective inhibitor of acid-sensing ion channel 3 (ASIC3) and it is currently in preclinical studies as a novel analgesic for the treatment of chronic inflammatory pain. As a peptide it faces many challenges in the drug development process, including the potential lack of stability often associated with therapeutic peptides. In this study we determined the susceptibility of wild-type APETx2 to trypsin and pepsin and tested the applicability of backbone cyclisation as a strategy to improve its resistance to enzymatic degradation. Cyclisation with either a six-, seven- or eight-residue linker vastly improved the protease resistance of APETx2 but substantially decreased its potency against ASIC3. This suggests that either the N- or C-terminus of APETx2 is involved in its interaction with the channel, which we confirmed by making N- and C-terminal truncations. Truncation of either terminus, but especially the N-terminus, has detrimental effects on the ability of APETx2 to inhibit ASIC3. The current work indicates that cyclisation is unlikely to be a suitable strategy for stabilising APETx2, unless linkers can be engineered that do not interfere with binding to ASIC3.
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- 2012
14. Chemical synthesis and folding of APETx2, a potent and selective inhibitor of acid sensing ion channel 3
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Thomas Durek, Jonas E. Jensen, Glenn F. King, Lachlan D. Rash, David J. Adams, and Paul F. Alewood
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Protein Folding ,Magnetic Resonance Spectroscopy ,Xenopus ,Nerve Tissue Proteins ,Peptide ,Toxicology ,Chemical synthesis ,Mass Spectrometry ,Sodium Channels ,Xenopus laevis ,chemistry.chemical_compound ,Cnidarian Venoms ,Peptide synthesis ,Animals ,Humans ,Disulfides ,Chromatography, High Pressure Liquid ,Acid-sensing ion channel ,Ion channel ,chemistry.chemical_classification ,biology ,Chemistry ,Hydrogen-Ion Concentration ,Native chemical ligation ,biology.organism_classification ,Rats ,Acid Sensing Ion Channels ,Electrophysiology ,Biochemistry ,Oocytes ,Marine Toxins ,Protein folding ,Oxidation-Reduction - Abstract
Acid sensing ion channels (ASICs) are pH-sensitive channels that are distributed in the central and peripheral nervous system and which are believed to play a key role in pain perception. APETx2, a 42-residue peptide toxin isolated from the sea anemone Anthopleura elegantissima, is the only known selective inhibitor of ASIC3 channels. Here we describe the total chemical synthesis of APETx2 by solid-phase peptide synthesis and native chemical ligation. The folded synthetic toxin had an IC(50) of 57 nM for inhibition of rat ASIC3 channels expressed in Xenopus oocytes, in agreement with the IC(50) reported for the native toxin (63 nM). The native chemical ligation approach should provide an efficient route for synthesis of other pharmacologically useful disulfide-rich toxins from venomous animals.
- Published
- 2009
15. Modeling the Binding Free Energy of Large Atmospheric Sulfuric Acid–Ammonia Clusters
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Morten Engsvang and Jonas Elm
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Chemistry ,QD1-999 - Published
- 2022
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16. BMSC–HNC Interaction: Exploring Effects on Bone Integrity and Head and Neck Cancer Progression
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Jonas Eichberger, Daniel Froschhammer, Daniela Schulz, Konstantin J. Scholz, Marianne Federlin, Helga Ebensberger, Torsten E. Reichert, Tobias Ettl, and Richard J. Bauer
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head and neck cancer ,bone marrow-derived stromal cells ,collagenase enzymes ,MMP-1 ,MMP-9 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
In recent research, the tumor microenvironment has been shown to attract mesenchymal stromal cells (MSCs), which is of particular interest due to its implications for cancer progression. The study focused on understanding the interaction between bone marrow-derived MSCs (BMSCs) and head and neck cancer (HNC) cells. This interaction was found to activate specific markers, notably the osteogenic marker alkaline phosphatase and the oncogene Runx2. These activations corresponded with the release of collagenase enzymes, MMP9 and MMP2. To gain insights into bone resorption related to this interaction, bovine bone slices were used, supporting the growth of “heterogeneous spheroids” that contained both BMSCs and HNC cells. Through scanning electron microscopy and energy-dispersive X-ray (EDX) analysis, it was observed that these mixed spheroids were linked to a notable increase in bone degradation and collagen fiber exposure, more so than spheroids of just BMSCs or HNC cells. Furthermore, the EDX results highlighted increased nitrogen content on bone surfaces with these mixed clusters. Overall, the findings underscore the significant role of BMSCs in tumor growth, emphasizing the need for further exploration in potential cancer treatment strategies.
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- 2023
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17. Understanding the molecular basis of toxin promiscuity: the analgesic sea anemone peptide APETx2 interacts with acid-sensing ion channel 3 and hERG channels via overlapping pharmacophores
- Author
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Paul F. Alewood, Mehdi Mobli, K. Johan Rosengren, Raveendra Anangi, Carus H. Y. Lau, Jonas E. Jensen, Lachlan D. Rash, Glenn F. King, Andreas Brust, and Ben Cristofori-Armstrong
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chemistry.chemical_classification ,Models, Molecular ,ERG1 Potassium Channel ,biology ,Stereochemistry ,hERG ,Rational design ,Peptide ,Ether-A-Go-Go Potassium Channels ,Acid Sensing Ion Channels ,Structure-Activity Relationship ,Cnidarian Venoms ,Sea Anemones ,chemistry ,Drug Discovery ,Mutation ,biology.protein ,Molecular Medicine ,Structure–activity relationship ,Animals ,Humans ,Binding site ,Pharmacophore ,Acid-sensing ion channel ,Ion channel - Abstract
The sea anemone peptide APETx2 is a potent and selective blocker of acid-sensing ion channel 3 (ASIC3). APETx2 is analgesic in a variety of rodent pain models, but the lack of knowledge of its pharmacophore and binding site on ASIC3 has impeded development of improved analogues. Here we present a detailed structure-activity relationship study of APETx2. Determination of a high-resolution structure of APETx2 combined with scanning mutagenesis revealed a cluster of aromatic and basic residues that mediate its interaction with ASIC3. We show that APETx2 also inhibits the off-target hERG channel by reducing the maximal current amplitude and shifting the voltage dependence of activation to more positive potentials. Electrophysiological screening of selected APETx2 mutants revealed partial overlap between the surfaces on APETx2 that mediate its interaction with ASIC3 and hERG. Characterization of the molecular basis of these interactions is an important first step toward the rational design of more selective APETx2 analogues.
- Published
- 2014
18. Optimum number of cascaded cells for high-power medium-voltage multilevel converters
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Jonas E. Huber and Johann W. Kolar
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Computer science ,business.industry ,Wide-bandgap semiconductor ,Electrical engineering ,Converters ,Grid ,chemistry.chemical_compound ,chemistry ,Power module ,Redundancy (engineering) ,Electronic engineering ,Silicon carbide ,business ,Power density ,Voltage - Abstract
When power electronic systems are connected to the medium-voltage grid, often multilevel topologies consisting of a number of cascaded converter cells are considered. For a given grid voltage level, either few cells featuring semiconductors with high blocking voltage capability or many cells using low-voltage semiconductors can be employed. This paper proposes efficiency/power density (η-ρ) Pareto analysis to comprehensively identify the optimum number of cascaded cells. Recent advances in silicon carbide (SiC) semiconductor technology point towards devices with blocking voltages exceeding 15kV. The switching characteristics that hypothetical SiC devices would have to provide in order to realize a simple single-stage full-bridge converter competitive to a multilevel solution are derived and found to be impracticably fast. Furthermore, it is shown that reliability concerns arising with increasing number of cascaded cells can be mitigated by means of redundancy.
- Published
- 2013
19. Vascular function in cavin‐1‐deficient mice: role of arginase 1 and dimethylarginine dimethylaminohydrolase 1
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Catarina Rippe, Mardjaneh Karbalaei Sadegh, Sebastian Albinsson, Karl Swärd, Lo Persson, Jonas E Erjefält, and Michiko Mori
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medicine.medical_specialty ,Chemistry ,Biochemistry ,Arginase ,Dimethylarginine dimethylaminohydrolase ,Endocrinology ,Internal medicine ,Genetics ,medicine ,Deficient mouse ,Vascular function ,Molecular Biology ,Biotechnology ,Cavin - Published
- 2013
20. Clusteromics II: Methanesulfonic Acid–Base Cluster Formation
- Author
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Jonas Elm
- Subjects
Chemistry ,QD1-999 - Published
- 2021
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21. Vegetation types and patterns in Senegal based on multivariate analysis of field and NOAA-AVHRR satellite data
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Jonas E. Lawesson and Peter Frederiksen
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Vegetation types ,Ecology ,Chemistry ,Satellite data ,Analytical chemistry ,Plant Science ,West africa - Abstract
+ ++++ + + + + + + + + ++ ++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ++ + ++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
- Published
- 1992
22. Thermochemical nanolithography of multifunctional nanotemplates for assembling nano-objects
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Debin by Wang, William D. Underwood, Jonas E. Jarvholm, William P. King, Elisa Riedo, Seth R. Marder, Vamsi Kodali, Takshi Okada, Jennifer E. Curtis, Mariacristine Rumi, Simon C. Jones, and Zhenting Dai
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Chemistry ,Nanotechnology ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Chemical species ,Nanolithography ,Covalent bond ,Chemical conversion ,Nano ,Electrochemistry ,Chemical stability ,Amine gas treating ,Nanoscopic scale - Abstract
Nanoscale chemical patterning of different chemical species (amine, thiol, aldehyde, and biotin) in independent nanopatterns is achieved by the iterative application of thermochemical nanolithography (TCN L) to inscribe amine patterns followed by their chemical conversion to other functional groups. Due to the unique chemical stability of the patterns, the resultant substrates can be stored for weeks and subsequently be used for covalent and molecular-recognition-based attachment of nano-objects using standard chemical protocols. In particular, the ability of this method to attach proteins and DNA to the chemical nanopatterns and to create co-patterns of two distinctive bioactive proteins is demonstrated.
- Published
- 2009
23. Scanning mutagenesis of alpha-conotoxin Vc1.1 reveals residues crucial for activity at the alpha9alpha10 nicotinic acetylcholine receptor
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David J. Craik, Reena Halai, Jonas E. Jensen, David J. Adams, Richard J. Clark, and Simon T. Nevin
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Models, Molecular ,Magnetic Resonance Spectroscopy ,Xenopus ,Molecular Sequence Data ,Nicotinic Antagonists ,Pharmacology ,Receptors, Nicotinic ,Biochemistry ,Structure-Activity Relationship ,medicine ,Structure–activity relationship ,Animals ,Humans ,Point Mutation ,Conotoxin ,Amino Acid Sequence ,Nicotinic Antagonist ,Receptor ,Molecular Biology ,Acetylcholine receptor ,Chemistry ,Conus Snail ,Titrimetry ,Cell Biology ,Hydrogen-Ion Concentration ,Rats ,Nicotinic acetylcholine receptor ,Nicotinic agonist ,Protein Structure and Folding ,Oocytes ,Conotoxins ,Oxidation-Reduction ,Acetylcholine ,medicine.drug - Abstract
Vc1.1 is a disulfide-rich peptide inhibitor of nicotinic acetylcholine receptors that has stimulated considerable interest in these receptors as potential therapeutic targets for the treatment of neuropathic pain. Here we present an extensive series of mutational studies in which all residues except the conserved cysteines were mutated separately to Ala, Asp, or Lys. The effect on acetylcholine (ACh)-evoked membrane currents at the alpha9alpha10 nicotinic acetylcholine receptor (nAChR), which has been implicated as a target in the alleviation of neuropathic pain, was then observed. The analogs were characterized by NMR spectroscopy to determine the effects of mutations on structure. The structural fold was found to be preserved in all peptides except where Pro was substituted. Electrophysiological studies showed that the key residues for functional activity are Asp(5)-Arg(7) and Asp(11)-Ile(15), because changes at these positions resulted in the loss of activity at the alpha9alpha10 nAChR. Interestingly, the S4K and N9A analogs were more potent than Vc1.1 itself. A second generation of mutants was synthesized, namely N9G, N9I, N9L, S4R, and S4K+N9A, all of which were more potent than Vc1.1 at both the rat alpha9alpha10 and the human alpha9/rat alpha10 hybrid receptor, providing a mechanistic insight into the key residues involved in eliciting the biological function of Vc1.1. The most potent analogs were also tested at the alpha3beta2, alpha3beta4, and alpha7 nAChR subtypes to determine their selectivity. All mutants tested were most selective for the alpha9alpha10 nAChR. These findings provide valuable insight into the interaction of Vc1.1 with the alpha9alpha10 nAChR subtype and will help in the further development of analogs of Vc1.1 as analgesic drugs.
- Published
- 2009
24. High-speed, Thermo-chemical Nanolithography for Biological Applications
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Takashi Okada, Simon C. Jones, William P. King, Jonas E. Jarvholm, Marcel Lucas, Jennifer E. Curtis, Vamsi Kodali, Elisa Riedo, Robert Szoszkiewicz, Debin Wang, William D. Underwood, and Seth R. Marder
- Subjects
chemistry.chemical_classification ,Nanolithography ,chemistry ,Biomolecule ,Nano ,Resolution (electron density) ,Biophysics ,Substrate (chemistry) ,Nanotechnology ,Polymer ,Wetting ,Chemical reaction - Abstract
Scanning probe-based chemical nanolithography has been recognized as an essential part of future nanofabrication processes. However, most of the present strategies still have significant limitations in terms of throughput, resolution and substrate variety. Recently, we have developed a new chemical nanolithography technique called thermo-chemical nanolithography (TCNL). TCNL utilizes a resistively-heated atomic force microscope tip to thermally activate a chemical reaction on an arbitrary organic or inorganic substrate surface. TCNL can write well-defined chemical features at a rate of mm/s, with sub-15 nm resolution [1]. In particular, we have demonstrated that carboxylic ester groups on a polymer surface can be deprotected by TCNL to give carboxylic acids and further modified to form anhydrides [2]. Therefore, TCNL can tune surface wettability with in situ write-read-overwrite capability. In addition, nanoarrays of TCNL-activated amine groups have been used as anchor sites to immobilize a variety of biological ligands [3]. This proves TCNL to be a powerful tool to control the physical placement of biomolecules and cells. It can be applied to a range of molecular cell biology studies such as ligand-receptor recognition and cell signaling.1. R. Szoszkiewicz, T. Okada, S. C. Jones, T.-D. Li, W. P. King, S. R. Marder, and E. Riedo, Nano Lett. 7, 1064 (2007).2. D. B. Wang, R. Szoszkiewicz, T. Okada, S. C. Jones, M. Lucas, J. Lee, W. P. King, S. R. Marder, and E. Riedo, Appl. Phys. Lett. 91, 243104 (2007).3. D. Wang, V. Kodali, W. D. Underwood, J. E. Jarvholm, T. Odaka, S. J. Jones, C. Rumi, W. P. King, S. R. Marder, J.E. Curtis and E. Riedo, (2008) in preparation.
- Published
- 2009
- Full Text
- View/download PDF
25. Clusteromics I: Principles, Protocols, and Applications to Sulfuric Acid–Base Cluster Formation
- Author
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Jonas Elm
- Subjects
Chemistry ,QD1-999 - Published
- 2021
- Full Text
- View/download PDF
26. Traversing the 'top-down/bottom-up' divide: molecular-scale lithography of self-assembled ribbons
- Author
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Laren M. Tolbert, Jonas E. Jarvholm, and Mohan Srinivasarao
- Subjects
Silicon ,Scale (ratio) ,fungi ,technology, industry, and agriculture ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Biochemistry ,Catalysis ,Self assembled ,Colloid and Surface Chemistry ,chemistry ,Resist ,Molecule ,Lithography - Abstract
Use of graphitic (hexabenzocoronene-derived) molecules produces cholesteric ribbons which serve as molecular resists in a fluorine plasma. This procedure allows the shape of the molecular assemblies to be etched into the underlying silicon, validating the concept of “molecular resists”.
- Published
- 2008
27. Large-Scale Protein Analysis of Experimental Retinal Artery Occlusion
- Author
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Nanna Vestergaard, Lasse Jørgensen Cehofski, Alexander Nørgård Alsing, Anders Kruse, Jonas Ellegaard Nielsen, Anders Schlosser, Grith Lykke Sorensen, Bent Honoré, and Henrik Vorum
- Subjects
retinal artery occlusion ,proteomics ,mass spectrometry ,animal models ,retinal ischemia diseases ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Retinal artery occlusion (RAO) is a devastating condition with no effective treatment. The management of RAO could potentially be improved through an in-depth understanding of the molecular alterations in the condition. This study combined advanced proteomic techniques and an experimental model to uncover the retinal large-scale protein profile of RAO. In 13 pigs, RAO was induced with an argon laser and confirmed by fluorescein angiography. Left eyes serving as controls received a sham laser without inducing occlusion. Retinal samples were collected after one, three, or six days and analyzed with liquid chromatography—tandem mass spectrometry. In RAO, 36 proteins were differentially regulated on day one, 86 on day three, and 557 on day six. Upregulated proteins included clusterin, vitronectin, and vimentin, with several proteins increasing over time with a maximum on day six, including clusterin, vimentin, osteopontin, annexin-A, signal transducer, and the activator of transcription 3. On day six, RAO resulted in the upregulation of proteins involved in cellular response to stress, hemostasis, innate immune response, and cytokine signaling. Downregulated proteins were involved in transmission across chemical synapses and visual phototransduction. This study identified the upregulation of multiple inflammatory proteins in RAO and the downregulation of proteins involved in visual pathways.
- Published
- 2023
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- View/download PDF
28. An Empirical Investigation on the Influence of the Number of Particle Outlets and Volume Flow Rates on Separation Efficiency and Pressure Drop in a Uniflow Hydrocyclone
- Author
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Thomas Senfter, Jonas Ennemoser, Manuel Berger, Christian Mayerl, Tobias Kofler, and Martin Pillei
- Subjects
solid–liquid separation ,uniflow hydrocyclone ,performance evaluation ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The influence of the number of particle outlets as well as of varying inlet and underflow volume flow rates on separation efficiency and pressure drop of uniflow hydrocyclones was empirically investigated. Therefore, several prototypes were designed and constructed, and separation tests were systematically conducted on a test rig. With regard to the number of particle outlets, the influence of a single, twofold and fourfold particle outlet on the separator’s performance was evaluated. The results showed that a higher number of particle outlets had neither a measurable influence on the separator’s separation efficiency nor on the pressure drop. However, high inlet volume flow rates favor particle separation but also lead to higher pressure drops. Accordingly, separation efficiencies in a range of 26.92 % to 38.56 % were recorded, while the pressure drop simultaneously varied between 0.218 bar and 0.413 bar. The separation efficiency was additionally enhanced by applying higher underflow volume flow rates. Increasing the underflow to inlet volume flow ratio by 4 % led to performance improvements by more than 6 % on average.
- Published
- 2023
- Full Text
- View/download PDF
29. Assessment of the DLPNO Binding Energies of Strongly Noncovalent Bonded Atmospheric Molecular Clusters
- Author
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Gunnar Schmitz and Jonas Elm
- Subjects
Chemistry ,QD1-999 - Published
- 2020
- Full Text
- View/download PDF
30. Dynamic 99Tcm-HIDA SPET: non-invasive measuring of intrahepatic bile flow. Description of the method and a study in primary sclerosing cholangitis
- Author
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Slezak P, Hans Jacobsson, Hultcrantz R, Schnell Po, Jonas E, and Blomqvist L
- Subjects
Adult ,Male ,medicine.medical_specialty ,Cholangitis, Sclerosing ,chemistry.chemical_element ,Intrahepatic bile ducts ,Technetium ,Primary sclerosing cholangitis ,Reference Values ,Biopsy ,Image Processing, Computer-Assisted ,Medicine ,Bile ,Humans ,Radiology, Nuclear Medicine and imaging ,Sampling (medicine) ,Stage (cooking) ,Cholangiopancreatography, Endoscopic Retrograde ,Tomography, Emission-Computed, Single-Photon ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,Technetium Tc 99m Lidofenin ,General Medicine ,medicine.disease ,chemistry ,Liver ,Female ,Radiology ,Radiopharmaceuticals ,business ,Liver function tests - Abstract
In this study dynamic 99 Tc m -HIDA single photon emission tomography (SPET) was performed in patients with primary sclerosing cholangitis and normal test subjects. The method offers the possibility of functional analysis of individual liver segments. After injection of 120 MBq of 99 Tc m -HIDA, 12 consecutive SPET examinations were performed at 6-min intervals. The segmental borders of liver segments as seen on computed tomography or magnetic resonance examinations were superimposed on the scintigraphic images allowing placement of regions of interest (ROIs) in specific liver segments. Sampling from the same ROIs in consecutive SPET images enabled creation of time-activity curves for individual liver segments. A range of normal values was created by quantitative analysis of normal volunteer studies. Results of the studies in patients correlated well with cholangiographic extent of disease, liver function tests and histological stage. The technique may have particular value in diseases that affect the liver in a non-homogenous or segmental fashion. Giving an indication of bile clearance from individual liver segments, it can quantify the functional importance of radiologically detected strictures. Percutaneous liver biopsy can be directed to the worst affected parts of the liver, making biopsy more representative. Sequential studies may allow monitoring of disease progression, aiding in selection and timing of therapeutic procedures.
- Published
- 2001
31. C5-substituted derivatives of 5-OMe-BPAT: synthesis and interactions with dopamine D2 and serotonin 5-HT1A receptors
- Author
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Håkan Wikström, Martin Tulp, Evert Homan, Jonas E. Nilsson, and Cor J. Grol
- Subjects
Male ,Tertiary amine ,Tetrahydronaphthalenes ,medicine.drug_class ,Stereochemistry ,Clinical Biochemistry ,Dopamine Agents ,Substituent ,Pharmaceutical Science ,Carboxamide ,In Vitro Techniques ,Biochemistry ,Chemical synthesis ,chemistry.chemical_compound ,Structure-Activity Relationship ,Dopamine ,Dopamine receptor D2 ,Drug Discovery ,medicine ,Animals ,Rats, Wistar ,Receptor ,Molecular Biology ,Chemistry ,Receptors, Dopamine D2 ,Organic Chemistry ,Rats ,Receptors, Serotonin ,Benzamides ,Molecular Medicine ,Serotonin ,Receptors, Serotonin, 5-HT1 ,medicine.drug - Abstract
Eight new C5-substituted derivatives of the potential atypical antipsychotic agent 5-methoxy-2-[N-(2-benzamidoethyl)-N-n-propylamino]tetralin (5-OMe-BPAT, 1) have been prepared by chemical conversion of the 5-trifluoromethylsulfonyloxy (triflate) analogue 4 via various Stille-type cross-couplings, a Heck reaction, and an amidation in moderate to good yields. The 5-acetyl, 5-cyano, 5-methyl, 5-(2-furyl), 5-phenyl, methyl 5-carboxylate, and the 5-carboxamido analogues 5-11 thus obtained, the previously disclosed 5-methoxy, 5-hydroxy, and 5-unsubstituted analogues 1-3, and the 5-triflate analogue 4 were evaluated for their ability to compete for [3H]-spiperone binding to rat striatal membranes containing dopamine D2 receptors, and their ability to compete for [3H]-8-OH-DPAT binding to rat frontal cortex membranes containing serotonin 5-HT1A receptors in vitro. Compounds 1-11 displayed weak to high affinities for dopamine D2 receptors, with Ki-values ranging from 550 nM for the 5-carboxamido analogue to 4.9 nM for the 5-hydroxy analogue. The relative affinities of the 5-methoxy, 5-hydroxy, and 5-unsubstituted analogues suggested that these compounds may bind to the same site and in a similar way as the 5-oxygenated DPATs, with the 5-methoxy substituent of 1 functioning as a hydrogen bond acceptor. The serotonin 5-HT1A receptor tolerated more structural diversity at the C5-position of 1, as revealed by the higher Ki-values of 1-11, which ranged from 60 nM for the 5-carboxamido analogue to 1.0 nM for the 5-unsubstituted analogue. Partial least-squares (PLS) analysis of a set of 24 molecular descriptors, generated for each analogue, revealed no significant correlation between the dopamine D2 receptor affinities of 1-11 and their molecular properties, supporting the view that they may have different binding modes at this receptor subtype. A PLS model with moderate predictability (Q2 = 0.49) could be derived for the serotonin 5-HT1A receptor affinities of 1-11. According to the model, a relatively lipophilic, nonpolar C5-substituent should be optimal for a high affinity at this receptor subtype.
- Published
- 2000
32. An Atmospheric Cluster Database Consisting of Sulfuric Acid, Bases, Organics, and Water
- Author
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Jonas Elm
- Subjects
Chemistry ,QD1-999 - Published
- 2019
- Full Text
- View/download PDF
33. Innentitelbild: The Engineering of an Orally Active Conotoxin for the Treatment of Neuropathic Pain (Angew. Chem. 37/2010)
- Author
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Brid P Callaghan, David J. Craik, David J. Adams, Jonas E. Jensen, Richard J. Clark, and Simon T. Nevin
- Subjects
Orally active ,Chemistry ,Neuropathic pain ,General Medicine ,Conotoxin ,Pharmacology - Published
- 2010
34. Inside Cover: The Engineering of an Orally Active Conotoxin for the Treatment of Neuropathic Pain (Angew. Chem. Int. Ed. 37/2010)
- Author
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Brid P Callaghan, Richard J. Clark, David J. Adams, Simon T. Nevin, Jonas E. Jensen, and David J. Craik
- Subjects
chemistry.chemical_classification ,Orally active ,Voltage-dependent calcium channel ,chemistry ,Neuropathic pain ,INT ,Cover (algebra) ,General Chemistry ,Conotoxin ,Pharmacology ,GABAB receptor ,Catalysis ,Cyclic peptide - Published
- 2010
35. Hit Identification of New Potent PqsR Antagonists as Inhibitors of Quorum Sensing in Planktonic and Biofilm Grown Pseudomonas aeruginosa
- Author
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Fadi Soukarieh, Ruiling Liu, Manuel Romero, Shaun N. Roberston, William Richardson, Simone Lucanto, Eduard Vico Oton, Naim Ruhul Qudus, Alaa Mashabi, Scott Grossman, Sadiqur Ali, Tomás Sou, Irena Kukavica-Ibrulj, Roger C. Levesque, Christel A. S. Bergström, Nigel Halliday, Shailesh N. Mistry, Jonas Emsley, Stephan Heeb, Paul Williams, Miguel Cámara, and Michael J. Stocks
- Subjects
Pseudomonas aeruginosa ,PqsR ,MvfR ,Pseudomonas quinolone signal (PQS) ,alkylquinolone ,biofilms ,Chemistry ,QD1-999 - Abstract
Current treatments for Pseudomonas aeruginosa infections are becoming less effective because of the increasing rates of multi-antibiotic resistance. Pharmacological targeting of virulence through inhibition of quorum sensing (QS) dependent virulence gene regulation has considerable therapeutic potential. In P. aeruginosa, the pqs QS system regulates the production of multiple virulence factors as well as biofilm maturation and is a promising approach for developing antimicrobial adjuvants for combatting drug resistance. In this work, we report the hit optimisation for a series of potent novel inhibitors of PqsR, a key regulator of the pqs system, bearing a 2-((5-methyl-5H-[1,2,4]triazino[5,6-b]indol-3-yl)thio) acetamide scaffold. The initial hit compound 7 (PAO1-L IC50 0.98 ± 0.02 μM, PA14 inactive at 10 μM) was obtained through a virtual screening campaign performed on the PqsR ligand binding domain using the University of Nottingham Managed Chemical Compound Collection. Hit optimisation gave compounds with enhanced potency against strains PAO1-L and PA14, evaluated using P. aeruginosa pqs-based QS bioreporter assays. Compound 40 (PAO1-L IC50 0.25 ± 0.12 μM, PA14 IC50 0.34 ± 0.03 μM) is one of the most potent PqsR antagonists reported showing significant inhibition of P. aeruginosa pyocyanin production and pqs system signaling in both planktonic cultures and biofilms. The co-crystal structure of 40 with the PqsR ligand binding domain revealed the specific binding interactions occurring between inhibitor and this key regulatory protein.
- Published
- 2020
- Full Text
- View/download PDF
36. Differential Expression of PD-L1 during Cell Cycle Progression of Head and Neck Squamous Cell Carcinoma
- Author
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Daniela Schulz, Martin Wetzel, Jonas Eichberger, Gerhard Piendl, Gero Brockhoff, Anja K. Wege, Torsten E. Reichert, Tobias Ettl, and Richard J. Bauer
- Subjects
PD-L1 ,HNSCC ,head and neck ,cell cycle inhibition/blockade/progression ,palbociclib ,aphidicolin ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The expression of PD-L1 by tumor cells is mainly associated with its immunosuppressive effect. In fact, PD-1/PD-L1 immune checkpoint inhibitors demonstrated remarkable effects in advanced cancer patients including HNSCC. In this context, irradiation is currently being investigated as a synergistic treatment modality to immunotherapy. However, the majority of HNSCC patients still show little improvement or even hyperprogression. Interestingly, there is increasing evidence for additional cell-intrinsic functions of PD-L1 in tumor cells. In previous studies, we showed that PD-L1 has a strong influence on proliferation, migration, invasion, and survival after irradiation. We demonstrated that cellular expression and localization of PD-L1 differed depending on sensitivity to irradiation. Here, we show that PD-L1 is also differentially expressed during cell cycle progression of HNSCC. Furthermore, cellular localization of PD-L1 also changes depending on a particular cell cycle phase. Moreover, distinct observations occurred depending on the general differentiation status. Overall, the function of PD-L1 cannot be generalized. Rather, it depends on the differentiation status and microenvironment. PD-L1 expression and localization are variable, depending on different factors. These findings may provide insight into why differential response to PD-1/PD-L1 antibody therapy can occur. Detailed understanding of cell-intrinsic PD-L1 functions will further allow antibody-based immunotherapy to be optimized.
- Published
- 2021
- Full Text
- View/download PDF
37. Fluorescence Correlation Spectroscopy Combined with Multiphoton Laser Scanning Microscopy—A Practical Guideline
- Author
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Jeemol James, Jonas Enger, and Marica B. Ericson
- Subjects
laser scanning multiphoton microscope (MPM) ,fluorescence correlation spectroscopy (FCS) ,molecular diffusion ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Multiphoton laser scanning microscopy (MPM) has opened up an optical window into biological tissues; however, imaging is primarily qualitative. Cell morphology and tissue architectures can be clearly visualized but quantitative analysis of actual concentration and fluorophore distribution is indecisive. Fluorescence correlation spectroscopy (FCS) is a highly sensitive photophysical methodology employed to study molecular parameters such as diffusion characteristics on the single molecule level. In combination with laser scanning microscopy, and MPM in particular, FCS has been referred to as a standard and highly useful tool in biomedical research to study diffusion and molecular interaction with subcellular precision. Despite several proof-of-concept reports on the topic, the implementation of MPM-FCS is far from straightforward. This practical guideline aims to clarify the conceptual principles and define experimental operating conditions when implementing MPM-FCS. Validation experiments in Rhodamine solutions were performed on an experimental MPM-FCS platform investigating the effects of objective lens, fluorophore concentration and laser power. An approach based on analysis of time-correlated single photon counting data is presented. It is shown that the requirement of high numerical aperture (NA) objective lenses is a primary limitation that restricts field of view, working distance and concentration range. Within these restrictions the data follows the predicted theory of Poisson distribution. The observed dependence on laser power is understood in the context of perturbation on the effective focal volume. In addition, a novel interpretation of the effect on measured diffusion time is presented. Overall, the challenges and limitations observed in this study reduce the versatility of MPM-FCS targeting biomedical research in complex and deep tissue—being the general strength of MPM in general. However, based on the systematic investigations and fundamental insights this report can serve as a practical guide and inspire future research, potentially overcoming the technical limitations and ultimately allowing MPM-FCS to become a highly useful tool in biomedical research.
- Published
- 2021
- Full Text
- View/download PDF
38. The Chorioallantoic Membrane Assay in Nanotoxicological Research—An Alternative for In Vivo Experimentation
- Author
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Christoph R. Buhr, Nadine Wiesmann, Rachel C. Tanner, Jürgen Brieger, and Jonas Eckrich
- Subjects
nanoparticles ,toxicology ,animal models ,in vivo models ,rodent models ,CAM assay ,Chemistry ,QD1-999 - Abstract
Nanomaterials unveil many applicational possibilities for technical and medical purposes, which range from imaging techniques to the use as drug carriers. Prior to any human application, analysis of undesired effects and characterization of their toxicological profile is mandatory. To address this topic, animal models, and rodent models in particular, are most frequently used. However, as the reproducibility and transferability to the human organism of animal experimental data is increasingly questioned and the awareness of animal welfare in society increases at the same time, methodological alternatives are urgently required. The chorioallantoic membrane (CAM) assay is an increasingly popular in ovo experimental organism suitable for replacement of rodent experimentation. In this review, we outline several application fields for the CAM assay in the field of nanotoxicology. Furthermore, analytical methods applicable with this model were evaluated in detail. We further discuss ethical, financial, and bureaucratic aspects and benchmark the assay with other established in vivo models such as rodents.
- Published
- 2020
- Full Text
- View/download PDF
39. In Vivo Modulation of Angiogenesis and Immune Response on a Collagen Matrix via Extracorporeal Shockwaves
- Author
-
Diana Heimes, Nadine Wiesmann, Jonas Eckrich, Juergen Brieger, Stefan Mattyasovszky, Peter Proff, Manuel Weber, James Deschner, Bilal Al-Nawas, and Peer W. Kämmerer
- Subjects
oral inflammation ,angiogenesis ,extracorporeal shockwave therapy ,collagen matrix ,mucoderm® ,chorioallantoic membrane assay ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The effective management of tissue integration and immunological responses to transplants decisively co-determines the success of soft and hard tissue reconstruction. The aim of this in vivo study was to evaluate the eligibility of extracorporeal shock wave therapy (ESWT) with respect to its ability to modulate angiogenesis and immune response to a collagen matrix (CM) for tissue engineering in the chorioallantoic membrane (CAM) assay, which is performed with fertilized chicken eggs. CM were placed on the CAM on embryonic development day (EDD) 7; at EDD-10, ESWT was conducted at 0.12 mJ/mm2 with 500 impulses each. One and four days later, angiogenesis represented by vascularized area, vessel density, and vessel junctions as well as HIF-1α and VEGF gene expression were evaluated. Furthermore, immune response (iNOS2, MMP-9, and MMP-13 via qPCR) was assessed and compared between ESWT- and non-ESWT-groups. At EDD-14, the vascularized area (+115% vs. +26%) and the increase in vessel junctions (+751% vs. +363%) were significantly higher in the ESWT-group. ESWT significantly increased MMP-9 gene expression at EDD-11 and significantly decreased MMP-13 gene expression at EDD-14 as compared to the controls. Using the CAM assay, an enhanced angiogenesis and neovascularization in CM after ESWT were observed. Furthermore, ESWT could reduce the inflammatory activity after a latency of four days.
- Published
- 2020
- Full Text
- View/download PDF
40. PD-L1 Influences Cell Spreading, Migration and Invasion in Head and Neck Cancer Cells
- Author
-
Jonas Eichberger, Daniela Schulz, Kristian Pscheidl, Mathias Fiedler, Torsten Eugen Reichert, Richard Josef Bauer, and Tobias Ettl
- Subjects
PD-L1 ,head and neck squamous cell carcinoma ,HNSCC ,Rho-GTPase ,migration ,invasion ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The programmed cell death protein-1 (PD-1)/programmed cell death ligand-1 (PD-L1) axis blockade has been implemented in advanced-stage tumor therapy for various entities, including head and neck squamous cell carcinoma (HNSCC). Despite a promising tumor response in a subgroup of HNSCC patients, the majority suffer from disease progression. PD-L1 is known to influence several intrinsic mechanisms in cancer cells, such as proliferation, apoptosis, migration and invasion. Here, we modulated PD-L1 expression in three HNSCC cell lines with differential intrinsic PD-L1 expression. In addition to an alteration in the epithelial-to-mesenchymal transition (EMT) marker expression, we observed PD-L1-dependent cell spreading, migration and invasion in a spheroid spreading assay on four different coatings (poly-L-lysine, collagen type I, fibronectin and Matrigel®) and a chemotactic transwell migration/invasion assay. Furthermore, the overexpression of PD-L1 led to increased gene expression and small interfering ribonucleic acid (siRNA) knockdown and decreased gene expression of Rho-GTPases and related proteins in a RT2 Profiler™ PCR Array. Rac1 and Rho-GTPase pulldown assays revealed a change in the activation state concordantly with PD-L1 expression. In summary, our results suggest a major role for PD-L1 in favoring cell motility, including cell spreading, migration and invasion. This is presumably caused by altered N-cadherin expression and changes in the activation states of small Rho-GTPases Rho and Rac1.
- Published
- 2020
- Full Text
- View/download PDF
41. Effect of conjugation on the incorporation of glycine into Tetrahymena
- Author
-
Jonas E. Richmond
- Subjects
DNA Replication ,Transcription, Genetic ,Physiology ,Cell ,Glycine ,Biology ,Biochemistry ,Cell membrane ,chemistry.chemical_compound ,Cytosol ,Biosynthesis ,medicine ,Animals ,Nuclear protein ,Molecular Biology ,Cell Nucleus ,Recombination, Genetic ,Tetrahymena pyriformis ,Tetrahymena ,General Medicine ,Metabolism ,biology.organism_classification ,medicine.anatomical_structure ,chemistry ,Conjugation, Genetic ,Microsome ,Subcellular Fractions - Abstract
1. 1. Conjugation of Tetrahymena enhanced the incorporation of glycine into the nuclear fraction by 500%. 2. 2. Incorporation of glycine into the microsomal supernatant was augmented by almost 500% by conjugation. 3. 3. Mitochondrial incorporation was stimulated nearly 3-fold in the conjugating strains while the incorporation of glycine into the microsomes was enhanced approximately 2.5 times. 4. 4. In the whole cell, glycine incorporation was increased nearly 2-fold by conjugation. 5. 5. Strong nuclear involvement was indicated by elevated metabolic activity and incorporation of glycine into RNA and DNA. 6. 6. Stimulation of the metabolism of Tetrahymena by cell communication suggests that the contents of a cell can have a synergistic effect on another cell. 7. 7. Augmentation of the biosynthetic capacities of cells by fusion is a demonstration of the dominant role of the cell membrane in the regulation and control of cells. 8. 8. Enhancement of biosynthesis of nuclear proteins in conjugating strains of cells indicates that fusion gives rise to the synthesis of new protein from previously existing protein or protein procursors. 9. 9. The specific activities of the subcellular fractions after the incorporation of glycine into 2 separated starved strains of Tetrahymena followed the usual pattern of nucleus less than whole cells, whole cells less than mitochondria, mitochondria less than microsomes, but with the microsomal supernatant being much greater than that of the microsomes.
- Published
- 1976
42. Biosynthesis of membrane and a membrane glycoprotein in Tetrahymena pyriformis
- Author
-
Jonas E. Richmond
- Subjects
Whole membrane ,Time Factors ,Physiology ,Phenylalanine ,Biochemistry ,Cell membrane ,chemistry.chemical_compound ,Biosynthesis ,Glucosamine ,medicine ,Animals ,Molecular Biology ,Glycoproteins ,chemistry.chemical_classification ,biology ,Tetrahymena pyriformis ,Cell Membrane ,Tetrahymena ,General Medicine ,biology.organism_classification ,Amino acid ,Membrane glycoproteins ,medicine.anatomical_structure ,chemistry ,biology.protein ,Glycoprotein - Abstract
1. 1. A membrane glycoprotein was isolated from Tetrahymena surface membrane with properties similar to mammalian erythrocyte glycoprotein. 2. 2. This membrane glycoprotein had a specific acitivity less than whole membrane at various time intervals up to 40 hr. 3. 3. In double labelling experiments, glucosamine contributed a greater degree of the labelling of this glycoprotein than did amino acids. 4. 4. Greater incremental increases in the glucosamine radioactivity over amino acids at the longer time intervals suggests that the carbohydrate and protein moieties may have independent metabolic pathways. 5. 5. When Tetrahymena was grown in proteose peptone-tryptone in the presence of labelled amino acid, the specific activity of the surface membrane was less than one-tenth of the specific activity obtained in defined growth media. Under these same conditions, there were only slight changes in the specific activities of glucosamine in the membrane. 6. 6. Data is presented suggesting independent synthesis of the protein and oligosaccharide from different pools.
- Published
- 1976
43. Partial Purification of the Virus of Epidemic Influenza by Adsorption on Calcium Phosphate
- Author
-
Jonas E. Salk
- Subjects
Chromatography ,biology ,Elution ,Chemistry ,Small volume ,Phosphate buffered saline ,chemistry.chemical_element ,Calcium ,biology.organism_classification ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Suspension (chemistry) ,Adsorption ,Biochemistry ,Bacteria - Abstract
The purpose of the present communication is to summarize certain of a series of experiments on the partial purification of influenza virus using calcium phosphate as the adsorbing agent. The procedure is simple and the amount of material that can be handled is limited only by the volume of infected lung suspension or chick embryonic tissue suspension available.The procedure herein employed is a modification of a previously reported method1, † for the removal of bacteria from large quantities of broth culture. By the addition of calcium chloride and phosphate buffer, at pH 7.5, a precipitate of calcium phosphate is formed in the broth culture. The precipitate adsorbs the bacteria, settles quickly, and can readily be separated from the supernatant fluid. The bacteria are then “eluted’ from the calcium phosphate by adjusting the hydrogen ion concentration of the resuspended precipitate to about pH 4.5. This causes the calcium phosphate to go into solution, leaving the bacteria suspended in a small volume of ...
- Published
- 1941
44. The role of the carbon skeleton of lysine in the biosynthesis of hemoglobin
- Author
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Jonas E. Richmond, Kurt I. Altman, and Leon L. Miller
- Subjects
Protoporphyrin IX ,Biochemical Phenomena ,Stereochemistry ,Lysine ,Biophysics ,chemistry.chemical_element ,Biochemistry ,Carbon ,Hemoglobins ,chemistry.chemical_compound ,chemistry ,Biosynthesis ,Protoporphyrin ,Schmidt reaction ,Hemoglobin ,Globin ,Musculoskeletal System ,Molecular Biology ,Skeleton - Abstract
1. 1. It has been shown that lysine-ϵ-C 14 , led to a dog, contributes significantly to the biosynthesis of the protoporphyrin IX in erythrocyte hemoglobin. 2. 2. The C 14 -activity of such hemoglobin protoporphyrin was found to be localized largely in carbon atoms C -10 and D -10 as ascertained by isolation of the two carbon atoms in question by means of the Schmidt reaction. 3. 3. A comparison of the specific millimolar C 14 -activities of protoporphyrin IX, and of glutamic and aspartic acids isolated from erythrocyte globin, suggests that the conversion of the carbon skeleton of lysine to the afore-mentioned metabolites occurs without preceding fragmentation through a five carbon intermediary metabolite which may be identical with α-ketoglutarate.
- Published
- 1952
45. FURTHER STUDIES ON THE BIOSYNTHESIS OF HEMIN IN BONE MARROW PREPARATIONS
- Author
-
Kurt I. Altman, Jonas E. Richmond, and Kurt Salomon
- Subjects
chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Biosynthesis ,Biochemistry ,medicine ,Cell Biology ,Bone marrow ,Molecular Biology ,Porphyrin ,Hemin - Published
- 1954
46. Flux and turnover rates of glycine in the dog liver perfused in situ
- Author
-
David H. Elwyn, William C. Shoemaker, Jonas E. Richmond, and Rapier H. McMenamy
- Subjects
chemistry.chemical_classification ,In situ ,medicine.medical_specialty ,Glycogen ,Biochemical Phenomena ,Chemistry ,Glycine ,Fabaceae ,Amino acid ,Perfusion ,chemistry.chemical_compound ,Dogs ,Endocrinology ,Flux (metallurgy) ,Liver ,Physiology (medical) ,Internal medicine ,medicine ,Animals ,Efflux ,Net flux - Abstract
Distribution of added glycine-1-C14 in the perfused dog liver was studied. Concentrations and specific activities of glycine in liver and plasma were measured as a function of time. Calculated values for glycine fluxes between plasma and liver were for influx, 10 to 150, efflux, 10 to 90, and for net influx into liver, –10 to 80 µmole/min/kg liver. Administration of an amino acid mixture containing unlabeled glycine increased the rates of influx, efflux and net flux of glycine into the liver, as well as the concentration of glycine in plasma. The turnover rate of glycine in liver was found to be of the order of 400 µmole/min/kg liver. The specific activities of other amino acids, glucose, and glycogen were measured.
- Published
- 1962
47. THE EFFECT OF x-RADIATION ON THE BIOSYNTHESIS OF HEMOGLOBIN
- Author
-
Kurt I. Altman, Jonas E. Richmond, and Kurt Salomon
- Subjects
Chemistry ,Spleen ,Cell Biology ,Roentgen rays ,Biochemistry ,chemistry.chemical_compound ,medicine.anatomical_structure ,Biosynthesis ,medicine ,Carbon-14 ,Globin ,Bone marrow ,Hemoglobin ,Molecular Biology ,Hemin - Published
- 1951
48. Studies on the biosynthesis of hemin in soy bean nodules
- Author
-
Jonas E. Richmond and Kurt Salomon
- Subjects
Magnesium ,chemistry.chemical_element ,General Medicine ,Hemoglobins ,chemistry.chemical_compound ,Malonate ,chemistry ,Biosynthesis ,Biochemistry ,Glycine ,Hemin ,Sodium azide ,Soybeans ,Hemoglobin ,Fluoride - Abstract
Soy bean nodule homogenates are able to incorporate the carbon atoms of acetate and glycine into hemin. Acids of the Krebs cycle, malonate and sodium azide inhibited the incorporation of the a-carbon atom of glycine into hemin. CoA and substances containing sulfhydryl groups also inhibited the above reaction. Magnesium, acetate, glycine, hydrosulfite and fluoride stimulated. The effects of various combinations of these substances were also investigated. Some implications of the results obtained are discussed.
- Published
- 1955
49. Micropolarographic determination of oxygen uptake of 7-day chick neural retina cells
- Author
-
Kimber Kraul and Jonas E. Richmond
- Subjects
animal structures ,Cell Survival ,Cells ,chemistry.chemical_element ,Chick Embryo ,Biology ,Oxygen ,Retina ,Oxygen Consumption ,Oxygen breathing ,medicine ,Animals ,Trypsin ,Embryo ,General Medicine ,Anatomy ,Chick embryos ,Oxygen uptake ,medicine.anatomical_structure ,chemistry ,embryonic structures ,Biophysics ,Polarography ,medicine.drug - Abstract
1. 1. Neural retinas from 7-day chick embryos were dissociated by use of trypsin and oxygen uptake of these dissociated cells was determined micropolarographically. 2. 2. Oxygen consumption was measured from preparations of embryo cells obtained from eggs produced at various times during the year. 3. 3. A value of 4·85 ±0·08 μ 1/min per 10 9 cells was obtained.
- Published
- 1971
50. Studies on the Metabolism of Plasma Glycoproteins*
- Author
-
Jonas E. Richmond
- Subjects
chemistry.chemical_classification ,Research ,Protein metabolism ,Proteins ,Metabolism ,Biochemistry ,Blood proteins ,Rats ,Plasma ,chemistry.chemical_compound ,Liver ,chemistry ,Blood chemistry ,Blood plasma ,Glycine ,Rabbits ,Liver function ,Glycoprotein ,Blood Chemical Analysis ,Glycoproteins - Published
- 1963
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