11 results on '"Shrabana Sarkar"'
Search Results
2. Decolourisation and Biodegradation of Textile Di-azo Dye Congo Red by Chryseobacterium geocarposphaerae DD3
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Rajib Bandopadhyay, Shrabana Sarkar, Aparna Banerjee, and Alex Echeverría-Vega
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decolourisation ,Geography, Planning and Development ,Chryseobacterium geocarposphaerae ,TJ807-830 ,Chryseobacterium ,phytotoxicity ,Management, Monitoring, Policy and Law ,TD194-195 ,biodegradation ,Congo red ,Renewable energy sources ,chemistry.chemical_compound ,GE1-350 ,Effluent ,wastewater ,biology ,Environmental effects of industries and plants ,Renewable Energy, Sustainability and the Environment ,Chemistry ,water treatment ,Biodegradation ,biology.organism_classification ,Environmental sciences ,Wastewater ,Water treatment ,Phytotoxicity ,textile dye ,Nuclear chemistry - Abstract
In the present study, Chryseobacterium geocarposphaerae DD3 isolated from textile industry dye effluent in West Bengal, India, displayed significant tolerance to sulfonated di-azo dye Congo red (CR), up to 500 ppm. The optimum decolourisation revealed that C. geocarposphaerae DD3 was capable of 96.52% decolourisation of 0.2 g L−1 CR within 12 h of treatment in the presence of 5 g L−1 glucose as supplementary carbon source. Biodegradation analysis of decolourised CR containing water was investigated by FTIR, MS and 1H NMR, which confirmed the absence of azo bond as well as the toxic aromatic amines. Further, phytotoxicity analysis was performed to assess the toxicity of CR before and after bacterial treatment. Growth indexes of Vigna radiata L. seed confirmed that the biodegraded water was non-phytotoxic in comparison to the control CR solution. Multivariate analyses confirmed the same, showing significant differences between measured plant health indicators for CR solutions, whereas no significant differences were found between distilled and treated water. This study is novel as it is the first report of dye degradation by C. geocarposphaerae and may lead to a sustainable way of treating dye-contaminated water in the near future.
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- 2021
3. Extremophilic Exopolysaccharides: Biotechnologies and Wastewater Remediation
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Aparna Banerjee, Shrabana Sarkar, Tanvi Govil, Patricio González-Faune, Gustavo Cabrera-Barjas, Rajib Bandopadhyay, David R. Salem, and Rajesh K. Sani
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Microbiology (medical) ,Environmental remediation ,Chemistry ,Mini Review ,Microorganism ,Biofilm ,Acid mine drainage ,Microbiology ,QR1-502 ,Bioremediation ,Wastewater ,bioremediation ,Environmental chemistry ,exopolysaccharide ,Extreme environment ,Extremophile ,environment ,extremophile ,commercialization - Abstract
Various microorganisms thrive under extreme environments, like hot springs, hydrothermal vents, deep marine ecosystems, hyperacid lakes, acid mine drainage, high UV exposure, and more. To survive against the deleterious effect of these extreme circumstances, they form a network of biofilm where exopolysaccharides (EPSs) comprise a substantial part. The EPSs are often polyanionic due to different functional groups in their structural backbone, including uronic acids, sulfated units, and phosphate groups. Altogether, these chemical groups provide EPSs with a negative charge allowing them to (a) act as ligands toward dissolved cations as well as trace, and toxic metals; (b) be tolerant to the presence of salts, surfactants, and alpha-hydroxyl acids; and (c) interface the solubilization of hydrocarbons. Owing to their unique structural and functional characteristics, EPSs are anticipated to be utilized industrially to remediation of metals, crude oil, and hydrocarbons from contaminated wastewaters, mines, and oil spills. The biotechnological advantages of extremophilic EPSs are more diverse than traditional biopolymers. The present review aims at discussing the mechanisms and strategies for using EPSs from extremophiles in industries and environment bioremediation. Additionally, the potential of EPSs as fascinating biomaterials to mediate biogenic nanoparticles synthesis and treat multicomponent water contaminants is discussed.
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- 2021
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4. Structural-functional analyses of textile dye degrading azoreductase, laccase and peroxidase: A comparative in silico study
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Nibedita Chakraborty, Aparna Banerjee, Priyanka Chakraborty, Karuna Soren, Rajib Bandopadhyay, and Shrabana Sarkar
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,Laccase ,biology ,Chemical structure ,In silico ,lcsh:Biotechnology ,Environmental pollution ,Multicopper oxidase ,01 natural sciences ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,030104 developmental biology ,Enzyme ,chemistry ,Biochemistry ,lcsh:Biology (General) ,010608 biotechnology ,lcsh:TP248.13-248.65 ,biology.protein ,lcsh:QH301-705.5 ,Biotechnology ,Thermostability ,Peroxidase - Abstract
Background: Textile industry not only plays a vital role in our daily life but also a prominent factor in improving global economy. One of the environmental concern is it releases huge quantities of toxic dyes in the water leading to severe environmental pollution. Bacterial laccase and azoreductase successfully oxidize complex chemical structure of nitrogen group-containing azo dyes. Additionally, the presence of textile dye infuriates bacterial peroxidase to act as a dye degrading enzyme. Our present study deals with three textile dye degrading enzymes laccase, azoreductase, and peroxidase through analyzing their structural and functional properties using standard computational tools. Result: According to the comparative analysis of physicochemical characteristics, it was clear that laccase was mostly made up of basic amino acids whereas azoreductase and peroxidase both comprised of acidic amino acids. Higher aliphatic index ascertained the thermostability of all these three enzymes. Negative GRAVY value of the enzymes confirmed better water interaction of the enzymes. Instability index depicted that compared to laccase and preoxidase, azoreductase was more stable in nature. It was also observed that the three model proteins had more than 90% of total amino acids in the favored region of Ramachandran plot. Functional analysis revealed laccase as multicopper oxidase type enzyme and azoreductase as FMN dependent enzyme, while peroxidase consisted of α-β barrel with additional haem group. Conclusion: Present study aims to provide knowledge on industrial dye degrading enzymes, choosing the suitable enzyme for industrial set up and to help in understanding the experimental laboratory requirements as well. Normal 0 false false false ES-CL X-NONE X-NONE /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Tabla normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin-top:0cm; mso-para-margin-right:0cm; mso-para-margin-bottom:8.0pt; mso-para-margin-left:0cm; line-height:107%; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi; mso-ansi-language:ES-CL;}
- Published
- 2020
5. A self-healable and antifouling hydrogel based on PDMS centered ABA tri-block copolymer polymersomes: a potential material for therapeutic contact lenses
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Sovan Lal Banerjee, Shrabana Sarkar, Sarthik Samanta, and Nikhil K. Singha
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Drug Carriers ,Curcumin ,Bacteria ,Biofouling ,Contact Lenses ,Chemistry ,technology, industry, and agriculture ,Biomedical Engineering ,Hydrogels ,Chain transfer ,macromolecular substances ,General Chemistry ,General Medicine ,Polyethylene glycol ,Raft ,Buffer solution ,chemistry.chemical_compound ,Dynamic light scattering ,Polymerization ,Chemical engineering ,Polymersome ,Copolymer ,General Materials Science ,Dimethylpolysiloxanes - Abstract
Herein we have prepared an antifouling and self-healable poly(dimethyl siloxane) (PDMS) based hydrogel which consists of a mixture of curcumin loaded zwitterionic PDMS polymersomes and amine functionalized PDMS polymersomes prepared via Reversible Addition-Fragmentation Chain Transfer (RAFT) polymerization and a Schiff-base reaction. The curcumin loaded polymersome consists of a PDMS and poly([dimethyl-[3-(2-methyl-acryloylamino)-propyl]-(3-sulfopropyl)ammonium)] (poly(sulfobetaine)) based tri-block copolymer (BCP) and it was characterized by dynamic light scattering (DLS), high resolution transmission electron microscopy (HRTEM), field emission scanning electron microscopy (FESEM) and atomic force microscopy (AFM) analyses. To prepare the hydrogel, amine functionalized PDMS polymersomes were crosslinked with polyethylene glycol dialdehyde (PEG-DA) in pH 7.4 buffer solution via a Schiff-base reaction. This hydrogel was able to show sustained delivery of the entrapped curcumin drug for more than 72 h. The self-healing characteristic of the prepared hydrogel in the presence of saline water was elucidated by the "scratch and heal" method and subsequently analyzed through tensile study. Due to the presence of the poly(zwitterionic) moiety in the hydrogel system, it was observed that the hydrogel can efficiently reduce protein deposition, where Bovine Serum Albumin (BSA) was taken as a model protein. It was observed that the curcumin loaded hydrogel was detrimental towards both Gram-negative (Escherichia coli) and Gram-positive (Staphylococcus aureus) bacteria. This type of smart soft hydrogel system can be a potential material for therapeutic applications for several eye diseases.
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- 2020
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6. Computational Study on Temperature Driven Structure-Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme
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Gustavo Cabrera-Barjas, Ignacio Sánchez-Arévalo, Shrabana Sarkar, Aparna Banerjee, Rajib Bandopadhyay, Patricio González-Faune, Krishnendu Majhi, and Aleydis Gómez
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Polymers and Plastics ,mesophiles ,Organic chemistry ,Context (language use) ,010402 general chemistry ,01 natural sciences ,Article ,03 medical and health sciences ,structure-function study ,QD241-441 ,glycosyl transferase ,Glycosyltransferase ,hyperthermophiles ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Chemistry ,Thermophile ,Bacterial polysaccharide ,bacterial polysaccharides ,General Chemistry ,Hyperthermophile ,0104 chemical sciences ,Amino acid ,Enzyme ,Biochemistry ,biology.protein ,Mesophile ,thermophiles - Abstract
Glycosyltransferase (GTs) is a wide class of enzymes that transfer sugar moiety, playing a key role in the synthesis of bacterial exopolysaccharide (EPS) biopolymer. In recent years, increased demand for bacterial EPSs has been observed in pharmaceutical, food, and other industries. The application of the EPSs largely depends upon their thermal stability, as any industrial application is mainly reliant on slow thermal degradation. Keeping this in context, EPS producing GT enzymes from three different bacterial sources based on growth temperature (mesophile, thermophile, and hyperthermophile) are considered for in silico analysis of the structural–functional relationship. From the present study, it was observed that the structural integrity of GT increases significantly from mesophile to thermophile to hyperthermophile. In contrast, the structural plasticity runs in an opposite direction towards mesophile. This interesting temperature-dependent structural property has directed the GT–UDP-glucose interactions in a way that thermophile has finally demonstrated better binding affinity (−5.57 to −10.70) with an increased number of hydrogen bonds (355) and stabilizing amino acids (Phe, Ala, Glu, Tyr, and Ser). The results from this study may direct utilization of thermophile-origin GT as best for industrial-level bacterial polysaccharide production.
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- 2021
7. Metal recovery using nanobiotechnology
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Krishnendu Majhi, Shrabana Sarkar, Rajib Bandopadhyay, Ashutosh Kabiraj, Raju Biswas, Bhramar Dutta, Moitri Let, and Urmi Halder
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inorganic chemicals ,biology ,Metal ions in aqueous solution ,chemistry.chemical_element ,Nanoparticle ,Nanotechnology ,biology.organism_classification ,Desulfovibrio ,Metal ,chemistry ,visual_art ,visual_art.visual_art_medium ,Nanobiotechnology ,Platinum ,Geobacter ,Stabilizer (chemistry) - Abstract
Nowadays, nanoscale matter has started a revolution in manufacturing and industrialization processes like metal recovery. However, the chemical synthesis of nanoparticles has several disadvantages such as high initial capital cost, hazardous environmental effects, and slow metal recovery. To overcome these situations, the green synthesis of nanoparticles has gained attention due to its cost-effectiveness and ecofriendly nature. In the present era, nanobiotechnology is a major approach to recover several valuable metals. Different organisms like plants, fungi, algae, and bacteria have the ability to synthesize nanoparticles. Polyphenolic compounds from plant extracts have great antioxidant and reducing properties that can enable the reduction of metal ions into zero-valent metal atoms. NADH-dependent nitrate reductase enzymes act as a stabilizer in the formation of nanoparticles. Microbes like Pseudomonas, Bacillus, Shewanella, Geobacter, Klebsiella, and Desulfovibrio are capable of synthesizing nanoparticles and recover valuable metals like platinum, palladium, gold, silver, selenium, uranium, and copper.
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- 2021
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8. Green polymeric nanomaterials for the photocatalytic degradation of dyes: a review
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Eric Lichtfouse, Shrabana Sarkar, Saravanan Rajendran, Rajib Bandopadhyay, Nidia Torres Ponce, Aparna Banerjee, The University of Burdwan, Universidad Catolica Del Maule, Universidad de Tarapaca, Centre européen de recherche et d'enseignement des géosciences de l'environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and FONDECYT Iniciacion by Govt. Of Chile11190325ANIDANID/FONDAP/15110019Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT)CONICYT FONDECYT11170414SVMCM-Non-Net fellowship
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Environmental remediation ,Context (language use) ,Review ,02 engineering and technology ,010501 environmental sciences ,engineering.material ,01 natural sciences ,7. Clean energy ,12. Responsible consumption ,Nanomaterials ,biopolymer ,Environmental Chemistry ,Water pollution ,0105 earth and related environmental sciences ,Pollutant ,dye ,Chemistry ,[SDE.IE]Environmental Sciences/Environmental Engineering ,Photocatalyst ,[CHIM.CATA]Chemical Sciences/Catalysis ,Biodegradation ,metal oxide ,021001 nanoscience & nanotechnology ,cellulose ,gelatine ,Dye degradation ,[CHIM.POLY]Chemical Sciences/Polymers ,13. Climate action ,Environmental chemistry ,8. Economic growth ,Photocatalysis ,engineering ,nanomaterial ,Biopolymer ,chitosan ,0210 nano-technology ,photocatalysis - Abstract
International audience; Pure and drinkable water will be rarer and more expensive as the result of pollution induced by industrialisation, urbanisa-tion and population growth. Among the numerous sources of water pollution, the textile industry has become a major issue because effluents containing dyes are often released in natural water bodies. For instance, about two years are needed to biodegrade dye-derived, carcinogenic aromatic amines, in sediments. Classical remediation methods based upon physico-chemical reactions are costly and still generate sludges that contain amine residues. Nonetheless, recent research shows that nanomaterials containing biopolymers are promising to degrade organic pollutants by photocatalysis. Here, we review the synthesis and applications of biopolymeric nanomaterials for photocatalytic degradation of azo dyes. We focus on conducting biopolymers incorporating metal, metal oxide, metal/metal oxide and metal sulphide for improved biodegradation. Biopoly-mers can be obtained from microorganisms, plants and animals. Unlike fossil-fuel-derived polymers, biopolymers are carbon neutral and thus sustainable in the context of global warming. Biopolymers are often biodegradable and biocompatible.
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- 2020
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9. Self-healable ultrahydrophobic modified bio-based elastomer using Diels-Alder ‘click chemistry’
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Nikhil K. Singha, Sagar Kumar Raut, Sujith Nair, Bhavya Parameswaran, Pranab Dey, Rupesh Gilbert, Prantik Mondal, Kinsuk Naskar, Sambhu Bhadra, and Shrabana Sarkar
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Materials science ,Polymers and Plastics ,Organic Chemistry ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Elastomer ,01 natural sciences ,Silsesquioxane ,0104 chemical sciences ,Contact angle ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,Covalent bond ,Materials Chemistry ,Click chemistry ,Molecule ,Thermal stability ,0210 nano-technology ,Maleimide - Abstract
Inclusion of self-healing and water-repellant properties within a commercially available elastomer could be of great significance in prolonging its longevity and sustainability. Herein, Diels-Alder (DA) ‘click’ reaction was employed to introduce self-healing and ultrahydrophobic features in commercially available ENR. In this case, the furfuryl groups were grafted onto the backbone of the pristine elastomer, followed by their DA ‘click’ modification with polyhedral oligomeric silsesquioxane isobutyl maleimide (POSSMI) molecules. Besides the provision of dynamic covalent linkages, the DA modified elastomer showed significantly improved hydrophobicity [water contact angle (WCA) > 140°], because of the presence of nano-sized POSS materials on the surface. In contrast to pristine ENR, the DA adduct POSS hybrid elastomer showed remarkably improved thermal stability, surface hardness, and adhesion to metal substrates. On heating at 120 °C, the furan-maleimide DA covalent linkages cleaved, which re-installed on annealing at 60 °C. In consequence, the DA elastomers exhibited relatively higher mechanical and healing efficacy than the pristine ENR.
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- 2021
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10. Interaction of serum albumins with fluorescent ligand 4-azido coumarin: spectroscopic analysis and molecular docking studies
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Pritam Roy, Nasim Sepay, Sandip Paul, Anjoy Majhi, Swagata Dasgupta, Shrabana Sarkar, and Pinki Saha Sardar
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0301 basic medicine ,Circular dichroism ,030102 biochemistry & molecular biology ,biology ,Ligand ,Stereochemistry ,Chemistry ,Tryptophan ,General Chemistry ,010402 general chemistry ,Human serum albumin ,01 natural sciences ,Binding constant ,Fluorescence ,Catalysis ,0104 chemical sciences ,03 medical and health sciences ,Materials Chemistry ,medicine ,biology.protein ,Bovine serum albumin ,Binding site ,medicine.drug - Abstract
Steady state fluorescence and time resolved fluorescence studies at 298 K and low temperature phosphorescence (LTP) studies at 77 K of the interaction of bovine serum albumin (BSA) and human serum albumin (HSA) with ligand 4-azido-2H-chromen-2-one or 4-azidocoumarin (4-AC) have been carried out to visualize the location of the binding site and perturbation of the binding site of the tryptophan (Trp)/tyrosine (Tyr) of the protein(s) by monitoring the emission maxima of Trp residue(s) in proteins. The fluorescence quenching study of Trp estimated that the binding constant for both protein–ligand complexes is in the order of ∼106 with binding site 1. Perturbation in the secondary structures of serum albumins due to binding of 4-AC is also observed from circular dichroism (CD) studies. An energy transfer (ET) study further demonstrated that the non-radiative singlet–singlet ET that takes place from the Trp singlet states of proteins to the singlet state of ligands is greater in the case of BSA. This is supported by the distance and orientation of the donor–acceptor pair obtained from molecular docking studies. The molecular docking studies were also fruitfully exploited to understand the involvement of Trp213 in BSA and Trp214 in HSA in the ET process along with the perturbation of the residues around 5 A from the ligand 4-AC. Phosphorescence spectra at 77 K of the Trp residues in the free proteins (BSA/HSA) and in the complexes of BSA/HSA have also been utilized to specify the role of Trp residues in ET and the binding process.
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- 2017
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11. Dual‐Responsive Self‐Healable Carboxylated Acrylonitrile Butadiene Rubber Based on Dynamic Diels–Alder 'Click Chemistry' and Disulfide Metathesis Reaction
- Author
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Nikhil K. Singha, Shrabana Sarkar, and Sovan Lal Banerjee
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Materials science ,Polymers and Plastics ,General Chemical Engineering ,Organic Chemistry ,Disulfide bond ,chemistry.chemical_compound ,chemistry ,Natural rubber ,visual_art ,Materials Chemistry ,Salt metathesis reaction ,Click chemistry ,visual_art.visual_art_medium ,Diels alder ,Organic chemistry ,Acrylonitrile ,Diels–Alder reaction - Published
- 2021
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