167 results on '"Ibrahim F"'
Search Results
2. Synthesis and Anticancer Activity of New Pyrimidine and Oxadiazole Acyclic Nucleoside Analogs and Thiazolopyrimidine Derivatives
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A. A. H. Abdel Rahman, M. N. M. Yousif, Dina S. El-kady, Amira K. F. Shaban, Hanem M. Awad, Wael A. El-Sayed, and Ibrahim F. Nassar
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chemistry.chemical_compound ,Acetic anhydride ,chemistry ,Pyrimidine ,Acyclic nucleoside ,Liver cell ,Hydrazine ,Oxadiazole ,General Chemistry ,Sugar ,Combinatorial chemistry ,Nucleoside - Abstract
A group of new substituted pyrimidine compounds, and their thiazolopyrimidines and 1,3,4-oxadiazolyl acyclic sugar derivatives have been synthesized as potential anti-cancer candidates. Oxadiazolyl-pyrimidine hybrid compounds have been synthesized by the reaction of thioacetohydrazide derivative with carbon disulfide and heterocyclization of sugar hydrazones with acetic anhydride. The synthesized products have been studied for their anticancer activity against human liver carcinoma (HepG-2) and human normal retina pigmented epithelium (RPE-1). The synthesized sugar hydrazine of D-glucose, its 1,3,4-oxadiazole acyclic nucleoside and arylidine derivative demonstrate high selective anti-cancer activity against liver cell line without side effects on normal cells.
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- 2021
3. Synthesis of pyrrolo[3,2-c]carbazole-2-carbohydrazides and pyrrolo[3,2-c]carbazol-2-yl-1,3,4-oxadiazoles and their in vitro antibacterial evaluation
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Hakan Kandemir, Ibrahim F. Sengul, Mehmet Hora, Mehmet F. Saglam, and Aycan Gundogdu
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chemistry.chemical_compound ,chemistry ,Carbazole ,Organic Chemistry ,Medicinal chemistry ,In vitro - Abstract
A number of novel pyrrolo[3,2-c]carbazole-2-carbohydrazides5a–dwas prepared from readily available 6-methyl-1,6-dihydropyrrolo[3,2-c]carbazole-2-carboxylate3and underwent cyclodehydration to produce the corresponding 2-(6-ethyl-1,6-dihydropyrrolo[3,2-c]carbazol-2-yl)-1,3,4-oxadiazoles6a–dwithp-toluenesulfonyl chloride (p-TsCl) andN,N-diisopropylethylamine (DIPEA) as dehydrative reagents. The structures of the targeted compounds were confirmed through1H NMR,13C NMR, IR, mass spectrometry and single crystal X-ray diffraction techniques. Moreover, the antibacterial properties of the synthesized compounds were evaluated against colistin resistant (ColR)Klebsiella pneumoniae, ColRAcinetobacter baumannii,Pseudomonas aeruginosa,Escherichia coliandStaphylococcus aureus. Among the synthesized compounds,5dwas found to be active on ColRK. pneumoniae(MIC = 64 µg/mL) while compounds4(MIC= 6a(MIC==E. coli. Preliminary assay showed that the pyrrolo[3,2-c]carbazole-2-carbohydrazides and 2-(6-methyl-1,6-dihydropyrrolo[3,2-c]carbazol-2-yl)-1,3,4-oxadiazoles showed promising antibacterial activity on important nosocomial multi drug resistant (MDR) pathogens.
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- 2021
4. Preparation and value assignment of parabens and phenoxyethanol in cosmetic cream certified reference material
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Mohamed A. Gab-Allah, Eman Rend, and Ibrahim F. Tahoun
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chemistry.chemical_compound ,Chromatography ,Certified reference materials ,chemistry ,Electrochemistry ,Value assignment ,Toxicology ,Cosmetic cream ,Spectroscopy ,Phenoxyethanol ,Analytical Chemistry - Published
- 2021
5. Synthesis, Docking and Anticancer Evaluation of New Pyridine-3-Carbonitrile Derivatives
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Safaa I. Elewa, Ibrahim F. Nassar, Eman Mansour, and Ahmed A. Abd-Rabou
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Polymers and Plastics ,010405 organic chemistry ,Stereochemistry ,Organic Chemistry ,010402 general chemistry ,Hydrazide ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Docking (dog) ,chemistry ,Pyridine ,Materials Chemistry ,Cytotoxicity - Abstract
N'-(2-((4-(Benzo[d][1, 3]dioxol-5-yl)-3-cyano-6-(naphthalen-2-yl)-pyridin-2-yl)oxy)- acetyl)benzohydrazide (6) and hydrazide derivatives (7–10) were synthesized via reaction of 3-cyano-pyridinacetohydrazide (5) with benzoylchloride and the appropriate aldehyde, respectively. Also, 4-(Benzo[d][1, 3]dioxol-5-yl)-2-(2-(3-methyl-5-oxo-4,5-dihydro-1H-pyrazol-1-yl)-2-oxoethoxy)-6-(naphthalen-2-yl) nicotinonitrile (11) was prepared through reaction of (5) with ethylacetoacetate. In addition, the hydrazide 5 was used as a starting material for synthesizing other nicotinonitrile derivatives (12, 13) and acetohydrazides (14, 15). Moreover, new 2, 5-disubsitituted-1,3,4-oxadiazoles (16, 17) were furnished by the reaction of (5) with benzoic acid derivatives. The cytotoxicity for some new compounds was investigated against human breast cancer MCF-7 and MDA-MB-231 cell lines at concentrations (0, 10, 20, 40, 60, 80, and 100 μg/ml) using MTT assay. Compounds (4, 9, 14 and 17) were recorded the lowest half-maximal inhibitory concentrations (IC50s) against MCF-7 and MDA-MB-231 cell lines via cytotoxicity assays. These results were confirmed using molecular docking experiments. From the previous observations, we suggested that our synthesized compounds could be of great potential against breast cancer cells.
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- 2021
6. Multifunctional system for combined chemodynamic–photodynamic therapy employing the endothelin axis based on conjugated polymer nanoparticles
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Martin Topps, Andre J. Gesquiere, Ibrahim F. Waheed, and Khalaf A. Jasim
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chemistry.chemical_classification ,Tumor microenvironment ,Reactive oxygen species ,Palliative care ,Polymers and Plastics ,Chemistry ,Melanoma ,medicine.medical_treatment ,Organic Chemistry ,Bioengineering ,Photodynamic therapy ,medicine.disease ,Biochemistry ,Lipid peroxidation ,chemistry.chemical_compound ,medicine ,Cancer research ,Photosensitizer ,Hydrogen peroxide - Abstract
Most nanomedicines that attack tumors by Reactive Oxygen Species (ROS) based on lipid peroxidation mechanisms require external activation to work. The leading example is Photodynamic Therapy (PDT), for which an external light source stimulates ROS production. PDT has been utilized in the treatment of melanoma patients as part of palliative care, and it has shown promise in clinical trials. However, it has several limitations in terms of practical applications, such as inadequate photosensitizer (PS) dispersion, tumor-oxygenation dependency, and therapeutic escape in aggressive tumors. To overcome these obstacles, our targeted dual-modal PDT/Chemodynamic therapy (CDT) has produced promising results, with a stronger therapeutic impact than CDT or PDT alone. We herein report polymer nanoparticles functionalized with endothelin ligands (EDN3-CP nanocomposite) that are specifically designed to target melanoma tumors. The nanoparticles are intrinsically active against melanoma tumor cells even without the use of external light. The Iron in the EDN3-CP nanocomposite catalyzes the Fenton reaction in tumor cells, allowing for CDT. CDT produces ROS by converting endogenous hydrogen peroxide (H2O2), which is elevated in most tumor microenvironments (TME), to hydroxyl radicals (˙OH). The ˙OH that result can quickly oxidize bio-macromolecules, destroy DNA and kill tumor cells. The EDN3-CP nanocomposite is therefore not reliant on oxygen availability, making it a promising therapeutic option for hypoxic malignancies. Herein, the melanoma-targeted EDN3-CP nanocomposite demonstrated substantial PDT and CDT together with respect to Malme-3M and A375 melanoma cells. Our findings suggest that tumor cells that overexpress EDNRB, particularly melanoma cells, can be effectively targeted. Our data indicate that the EDN3-CP nanocomposite allows for ferroptosis-assisted CDT, paving the way to combine with PDT for maximized therapeutic efficacy as a new therapeutic approach to tumor treatment.
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- 2021
7. A comparative study of metal-catalyzed three-component synthesis of α-aminophosphonates
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Ibrahim El-Sayed, Ibrahim F. Nassar, Marwa M. Abdeen, Abdel Aleem Hassan Abdel Aleem, and Mohamed A. Hamed
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Chemistry ,Component (thermodynamics) ,chemistry.chemical_element ,General Chemistry ,Catalysis ,lcsh:Chemistry ,Solvent ,Metal ,Perchlorate ,chemistry.chemical_compound ,lcsh:QD1-999 ,visual_art ,Polymer chemistry ,visual_art.visual_art_medium ,Lithium - Abstract
Different metal catalysts have been tested for the one-pot transformation of carbonyl compounds, amines and phosphites to α-aminophosphonates. The influence of catalyst type, amount, solvent and the substrate electronic factor have been investigated. The results revealed that the carbonyl compounds could be smoothly converted into α-aminophosphonates at room temperature in good to excellent yields, with or without solvent in a reasonable reaction time. These results suggested that among others, lithium perchlorate and metal triflates were proven to be effective catalysts in 10 moles % catalysts. Polar aprotic solvents proved to be the best for the synthesis of α-aminophosphonates. The synthesized compounds' structure characterizations were elucidated by different spectroscopic tools and showed results consistent with the expected structures.
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- 2021
8. Lu(<scp>iii</scp>) bis-phthalocyanines containing carbazole moieties: synthesis, characterization, electrochemical properties and sensor applications
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Hidayet Sarıoğulları, Ibrahim F. Sengul, and Ayşe Gül Gürek
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Detection limit ,Carbazole ,General Chemistry ,Glassy carbon ,Electrochemistry ,Ascorbic acid ,Catalysis ,chemistry.chemical_compound ,symbols.namesake ,chemistry ,Materials Chemistry ,symbols ,Phthalocyanine ,Cyclic voltammetry ,Raman spectroscopy ,Nuclear chemistry - Abstract
A new range of sandwich type tetra and octa bis-phthalocyanines (Car-Pc2-1 and Car-Pc2-2) starting from commercially available N-ethylcarbazole were successfully prepared whereby two phthalocyanine moieties are connected with a lutetium ion. Structural characterization of Lu(III) bis phthalocyanines (Lu(III)bisPc) was performed by 1H NMR, 13C NMR, infrared (IR), UV-vis-NIR, and MALDI-TOF spectroscopic techniques. The electrochemical properties of bis-phthalocyanines were characterized using cyclic voltammetry (CV) and square wave voltammetry (SWV). Lu(III)bisPcs were then electropolymerized on glassy carbon electrodes (GCE). Furthermore, new modified electrodes with the electropolymerization of Lu(III) bisPc by doping with graphane were developed in order to detect low concentrations of ascorbic acid (AA), dopamine (DA) and uric acid (UA). The surface morphologies of the hybrid electrodes were investigated using SEM/EDX, UV-Vis, IR and Raman spectroscopies. The sensing behavior of the modified electrodes was also tested to detect AA, DA and UA analytes. The Grp/Car-Pc2-1/GCE electrode selectively detected AA with a limit of detection (LOD) of 1.56 μM, while LOD values of Ply(Car-Pc2-2)/GCE and Grp/Ply(Car-Pc2-2)/GCE were determined to be 0.16 μM and 1.07 μM for DA and UA, respectively, by voltammetric analyses. Moreover, the modified electrodes were also applied to detect AA, DA and UA in tap water samples using the standard addition method with satisfactory results.
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- 2021
9. Bis-indole substituted phthalocyanines: Photophysical and photochemical properties
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Esra Nur Kaya, Mehmet F. Saglam, Devrim Atilla, Kevser Harmandar, and Ibrahim F. Sengul
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chemistry.chemical_compound ,biology ,010405 organic chemistry ,Chemistry ,Tetra ,Phenol ,General Chemistry ,Bis indole ,010402 general chemistry ,biology.organism_classification ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences - Abstract
Tetra substituted peripheral and non-peripheral Zn(II) phthalocyanines were successfully synthesized employing 4-(bis(3-methyl-1H-indol-2-yl)methyl)phenol as a starting material. The structure of these synthesized compounds was confirmed using 1H NMR, [Formula: see text]C NMR, infrared (IR), UV-vis, and MALDI-TOF spectral data. The photophysical (fluorescence quantum yields and lifetimes) and photochemical (singlet oxygen generation) properties of all synthesized peripheral and non-peripheral compounds were investigated in order to determine the potential of these compounds for application in photodynamic therapy.
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- 2020
10. Synthesis of New Furanone Derivatives with Potent Anticancer Activity
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A. O. Abdelhamid, W. H. Lashin, A. F. El Farargy, and Ibrahim F. Nassar
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Acetic acid ,chemistry.chemical_compound ,Thiourea ,Chemistry ,Ethyl acetoacetate ,Diamine ,Organic Chemistry ,Hydrazine ,Pyrazole ,Biochemistry ,Medicinal chemistry ,Oxazole ,Malononitrile - Abstract
New compounds based on Furanone derivatives were synthesized by reaction of 3-(4-nitrobezylidine)-5-phenylfuran-2(3H)-one with various reagents as malononitrile then D-glucose, thiosemicarbazide then D-glucose, ethyl acetoacetate, acetyl acetone, ethyl cyanoacetate, hydrazine hydrate/acetic acid, thiourea, o-phenylene diamine, hydrazine hydrate/ethanol then 2-naphthalene thionylchloride and/or thiourea. Also, 3-(4-nitrobezylidine)-5-phenylfuran-2(3H)-one was reacted with benzyl amine to afford the 1,3-dihydro-2H-pyrrol-2-one derivative which was reacted with hydroxyl amine and/or phenyl hydrazine to afford compounds the oxazole and/or pyrazole derivatives respectively. Finely, 6-(4-nitrophenyl)-5-(2-oxo-2-phenylethyl)-2-thioxotetrahydro-pyrimidin-4(1H)-one was allowed to react with 2-oxo-N-phenylpropanehydrazonoyl chloride yielding [1,2,4]triazolo[4,3-a]pyrimidin-7(1H)-one derivative. The anti-cancer activity of some of some of the new synthesized compounds towards breast carcinoma cells (MCF-7) was evaluated that demonstrated good to moderate results. Also, we had evaluated the cytotoxicity of the new tested compounds against the normal cells (MRC-5) which showed low toxicity on them.
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- 2020
11. Forced exercise activates the NrF2 pathway in the striatum and ameliorates motor and behavioral manifestations of Parkinson's disease in rotenone-treated rats
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Omyma Galal Ahmed, Dina M. Monir, Amany Abdelrahman, Motamed Elsayed Mahmoud, and Ibrahim F. Rehan
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Male ,Neurology ,Parkinson's disease ,Behavioral tests ,Striatum ,lcsh:RC346-429 ,Antiparkinson Agents ,Levodopa ,Behavioral Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,Parkinson ,Treadmill ,0303 health sciences ,Movement Disorders ,Behavior, Animal ,Dopaminergic ,General Medicine ,Up-Regulation ,Motor coordination ,Memory, Short-Term ,Signal Transduction ,medicine.drug ,medicine.medical_specialty ,Tyrosine 3-Monooxygenase ,NF-E2-Related Factor 2 ,Cognitive Neuroscience ,03 medical and health sciences ,Dopamine ,Physical Conditioning, Animal ,Internal medicine ,Rotenone ,medicine ,Animals ,Parkinson Disease, Secondary ,Rats, Wistar ,Exercise ,Gait Disorders, Neurologic ,Biological Psychiatry ,lcsh:Neurology. Diseases of the nervous system ,030304 developmental biology ,Uncoupling Agents ,business.industry ,Research ,Nrf2. TFAM ,medicine.disease ,Rats ,Neostriatum ,Endocrinology ,chemistry ,business ,Noq1 ,Psychomotor Performance ,030217 neurology & neurosurgery - Abstract
Background Parkinson's disease (PD) is a common neurodegenerative disorder characterized by progressive loss of nigrostriatal dopaminergic neurons leading to dopamine depletion and problems of movement, emotions, and cognition. While the pathogenesis of PD is not clear, damage of dopaminergic neurons by oxygen-derived free radicals is considered an important contributing mechanism. This study aimed to evaluate the role of treadmill exercise in male Wister rats as a single treatment and as an aid-therapy with L-dopa for rotenone-induced PD. To study the role of the Nrf2- ARE pathway as a mechanism involved in exercise-associated improvement in rotenone-induced PD in rats. Method Animals were divided into 5 groups, (Control, rotenone, rotenone\exercise, rotenone\L-dopa, and rotenone\exercise\L-dopa (combination)groups). After the PD induction, rats in the rotenone\exercise and combination groups were daily treadmill exercised for 4 weeks. Results Treadmill exercise significantly improved behavioral and motor aspects of rotenone-induced PD. When treadmill exercise was introduced as a single intervention, it amended most behavioral aspects of PD, gait fully corrected, short-term memory, and motor coordination. Where L-dopa corrected locomotor activity and motor coordination but failed to improve short-term memory and only partially corrected the gait of rotenone-treated rats. When treadmill exercise was combined with L-dopa, all features of PD were corrected. It was found that exercise upregulated some of its associative genes to Nrf2 pathways such as TFAM, Nrf2 and NQO.1 mRNA expression. Conclusion This study suggests that forced exercise improved parkinsonian like features by activating the Nrf2 pathway.
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- 2020
12. Synthesis of Some New Pyrazoline-Based Thiazole Derivatives and Evaluation of Their Antimicrobial, Antifungal, and Anticancer Activities
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Ibrahim F. Nassar, Eman Mansour, Amal A. I. Mekawey, and Safaa I. Elewa
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0301 basic medicine ,biology ,010405 organic chemistry ,Organic Chemistry ,Pyrazoline ,Carbon-13 NMR ,biology.organism_classification ,Antimicrobial ,01 natural sciences ,Biochemistry ,Chloride ,0104 chemical sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Chloroacetone ,chemistry ,medicine ,Bioorganic chemistry ,Organic chemistry ,Thiazole ,Bacteria ,medicine.drug - Abstract
3-(2-Thienyl)-5-aryl-1-thiocarbamoyl-2-pyrazolines were reacted with chloroacetone derivatives and hydrazonyl chloride derivatives in ethanol to afford the corresponding thiazolylpyrazoline derivatives and thiophenylpyrazolyl-5-substituted aryl-diazenylthiazole derivatives, respectively. The structures of the newly synthesized compounds were elucidated by different elemental and spectral analyses (IR, mass, 1H and 13C NMR). The antimicrobial and antifungal activities of the newly synthesized compounds were evaluated against four bacterial species and five fungal strains. In addition, the antitumor activities of two of the newly synthesized compounds 1-(2-(5-(4-chlorophenyl)-3-(thiophen-2-yl)-4,5-dihydropyrazol-1-yl)-4-methyl thiazol-5-yl)ethan-1-one and 2-(5-(4-chlorophenyl)-3-(thiophen-2-yl)-4,5-dihydro-1H-pyrazol-1-yl)-4-methyl-5-(phenyl-diazenyl)thiazole against HEPG-2, HCT-116, MCF-7, BHK, and CACO-2 were evaluated. From the obtained results, we found that these two compounds were the most potent candidates towards all gram-positive and gram-negative bacteria, as well as the fungi studied. Also, the same two compounds showed strong antitumor activities against two of the tumor cell lines (HCT-116 and CACO-2).
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- 2020
13. Integrative Application of Soil P-Solubilizing Bacteria and Foliar Nano P Improves Phaseolus vulgaris Plant Performance and Antioxidative Defense System Components under Calcareous Soil Conditions
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Ahmed A. El-Shewy, Ibrahim F. M. Abd El-Gawwad, Mohamed A. Seif El-Yazal, and Mostafa M. Rady
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0106 biological sciences ,biology ,Chemistry ,Glutathione reductase ,food and beverages ,Soil Science ,04 agricultural and veterinary sciences ,Plant Science ,Glutathione ,APX ,biology.organism_classification ,01 natural sciences ,Horticulture ,chemistry.chemical_compound ,Catalase ,040103 agronomy & agriculture ,biology.protein ,0401 agriculture, forestry, and fisheries ,Proline ,Phaseolus ,Agronomy and Crop Science ,Calcareous ,010606 plant biology & botany ,Peroxidase - Abstract
Potential influences of soil inoculation using phosphate-solubilizing bacteria (PSB) in integration with or without foliar spraying using mono-ammonium phosphate (MAP) or nano-phosphorus (NP) on performances, physio-biochemical attributes, and antioxidative defense system components in Phaseolus vulgaris plants were identified. A greenhouse preliminary and main pot experiments were conducted in calcareous soil (22% CaCO3) during fall and summer seasons of 2017/2018 and 2018/2019 in a completely randomized design. Preliminary experiments showed that the four concentrations: 1.0, 0.1, 0.5, and 0.05 g L−1 were the best for MAP, NP, and MAP when applied in integration with PSB, and NP when applied in integration with PSB, respectively, yielding the best results for plant growth and yield, total chlorophylls and P contents, and PSII efficiency (Fv/Fm). Therefore, these concentrations were selected for the main study. In main experiments, soil PSB or foliar MAP or NP resulted in significant increases in plant growth and yields, photosynthetic efficiency, gas exchange, relative water content, membrane stability index, ascorbate (AsA) and glutathione (GSH) contents and their redox states, contents of P, soluble sugars, glycine betaine, and activities of proline dehydrogenase (ProDH), superoxide dismutase (SOD), catalase (CAT), glutathione S-transferase (GST), ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), and dehydroascorbate reductase (DHAR) compared to controls. In contrast, oxidative stress biomarkers (electrolyte leakage, lipid peroxidation, superoxide, and hydrogen peroxide), contents of proline and P5C, and activities of P5SC and phosphatase were significantly reduced. However, integrative PSB+MAP or PSB+NP treatment further improved all abovementioned parameters in plants. Integrative PSB+NP was the best treatment, awarding best improvements in all investigated parameters. Therefore, it can be recommended for cultivation and sustainability of Phaseolus vulgaris crop in calcareous soils.
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- 2019
14. 3-Methylindole-substituted zinc phthalocyanines for photodynamic cancer therapy
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Yunus Zorlu, Elif Şenkuytu, Bassem Jamoussi, Devrim Atilla, Mehmet F. Saglam, Ibrahim F. Sengul, Sami Ayari, and Pelin Balcik Ercin
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Zinc phthalocyanine ,chemistry.chemical_compound ,chemistry ,medicine.medical_treatment ,medicine ,Cancer therapy ,Phthalocyanine ,chemistry.chemical_element ,Photodynamic therapy ,General Chemistry ,Zinc ,Combinatorial chemistry ,Cancer treatment - Abstract
Novel peripherally and non-peripherally 3-methylindole-substituted zinc phthalocyanine derivatives were synthesized as photosensitizers for photodynamic therapy in cancer treatment. The photophysical, photochemical and photobiological properties of targeted phthalocyanines were also investigated. For this purpose, the fluorescence and singlet oxygen quantum yields, and fluorescence lifetime values of the final compounds were determined in DMF solutions. The phototoxicity and cytotoxicity of the phthalocyanine complexes were tested against the invasive human breast cancer cell line (MDA-MB-231) for determination of their photosensitizing ability in the area of photodynamic therapy. It was revealed that while peripherally 3-methylindole-substituted phthalocyanine was found to be toxic for cells in both dark and light conditions, its non-peripherally substituted phthalocyanine analogue significantly caused cell death following light irradiation. A preliminary assay suggested that the non-peripherally linked phthalocyanine could be a suitable candidate for cancer treatment via photodynamic therapy techniques.
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- 2019
15. Antioxidant and antithrombotic effects of green mussels ( Perna canaliculus ) in rats
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Hussain Almasmoum, Abdulraheem S. A. Almalki, Asma A. Alsubaihi, Shaker Idris, Ahmed H. Qasem, Mashael Alkhanabashi, Mamdouh Allahyani, Hussain Banni, Riyad A. Almaimani, Mazen M. Ghaith, Abdulaziz Gassas, Ahmad Al-Ghamdi, Ibrahim F. Halawani, Abdullah F Aldairi, Nada A. Fallatah, Ayman Al-Hazmi, and Reema A. Alyamani
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Male ,Perna ,animal structures ,Antioxidant ,medicine.medical_treatment ,Biophysics ,Antioxidants ,Rats, Sprague-Dawley ,chemistry.chemical_compound ,Fibrinolytic Agents ,Antithrombotic ,medicine ,Animals ,Food science ,Perna canaliculus ,Pharmacology ,chemistry.chemical_classification ,medicine.diagnostic_test ,biology ,Glutathione peroxidase ,fungi ,Cell Biology ,Mussel ,Glutathione ,biology.organism_classification ,Rats ,Seafood ,chemistry ,Liver function ,Lipid profile ,Food Science - Abstract
In the past decade, the use of marine mussels as seafood is being more popular. They considered being a rich source of various nutritional bioactive compounds that aroused the scientific community's interest. This study investigated the antioxidant and the antithrombotic consequences on Sprague-Dawley male rats after adding dried New Zealand mussel Perna canaliculus in their diet. The biochemical, hematological and histopathological changes were also observed. Forty rats were divided into four groups according to the amount of dried mussels in their diet, in addition to a control group that consumed a basal diet only. Group 1 consumed 25% dried mussels in its basal diet; Group 2 consumed 35% dried mussels in its basal diet, and Group 3 was consumed 45% dried mussels in its basal diet. The biochemical parameters showed improvements in liver function. Interestingly, the lipid profile decreased, especially the low-density lipoprotein cholesterol (LDL-C) levels which were reduced significantly in Group 3 (p < .01). These observations were accompanied by a decrease in iron levels significantly as the amount of dried mussels increased (p < .01). Furthermore, the noticed changes in the hematological profile prove that there is an increase in antithrombotic activity. Dried mussels had potent antioxidant effects in the liver as shown by increased lipid peroxide (p < .05), reduced glutathione (p < .05), and glutathione peroxidase (GSH-Px; p < .05). Additionally, antioxidant activity in the kidney was shown to increase through GSH-Px activity (p < .01). In conclusion, these results indicate that consuming dried mussels resulted in improved biochemical and antioxidants activities and could be used as an antithrombotic agent.
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- 2021
16. Discovery of New Pyrazolopyridine, Furopyridine, and Pyridine Derivatives as CDK2 Inhibitors: Design, Synthesis, Docking Studies, and Anti-Proliferative Activity
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Hanem M. Awad, Amira K. F. Shaban, Samy F. Mahmoud, Nasser S.M. Ismail, Dina S. El-kady, Wael A. El-Sayed, Adel A.-H. Abdel-Rahman, and Ibrahim F. Nassar
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Pyridines ,Quantitative Structure-Activity Relationship ,Pharmaceutical Science ,Organic chemistry ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,QD241-441 ,Drug Discovery ,Imidazole ,chemistry.chemical_classification ,biology ,Imidazoles ,Molecular Docking Simulation ,Chemistry (miscellaneous) ,docking ,Molecular Medicine ,CDK2 ,pyridine ,HepG2 ,Pyrimidine ,Cell Survival ,Stereochemistry ,Antineoplastic Agents ,anticancer ,Article ,imidazole ,Inhibitory Concentration 50 ,Cell Line, Tumor ,Pyrazolopyridine ,Pyridine ,Humans ,Physical and Theoretical Chemistry ,Protein Kinase Inhibitors ,Dose-Response Relationship, Drug ,010405 organic chemistry ,Cyclin-Dependent Kinase 2 ,Active site ,0104 chemical sciences ,pyrazolo[3,4-b]pyridine ,010404 medicinal & biomolecular chemistry ,Pyrimidines ,Enzyme ,chemistry ,Doxorubicin ,Docking (molecular) ,Drug Design ,biology.protein ,Pyrazoles ,Azide ,Drug Screening Assays, Antitumor - Abstract
New pyridine, pyrazoloyridine, and furopyridine derivatives substituted with naphthyl and thienyl moieties were designed and synthesized starting from 6-(naphthalen-2-yl)-2-oxo-4-(thiophen-2-yl)-1,2-dihydropyridine-3-carbonitrile (1). The chloro, methoxy, cholroacetoxy, imidazolyl, azide, and arylamino derivatives were prepared to obtain the pyridine-−C2 functionalized derivatives. The derived pyrazolpyridine-N-glycosides were synthesized via heterocyclization of the C2-thioxopyridine derivative followed by glycosylation using glucose and galactose. The furopyridine derivative 14 and the tricyclic pyrido[3′,2′:4,5]furo[3,2-d]pyrimidine 15 were prepared via heterocyclization of the ester derivative followed by a reaction with formamide. The newly synthesized compounds were evaluated for their ability to in vitro inhibit the CDK2 enzyme. In addition, the cytotoxicity of the compounds was tested against four different human cancer cell lines (HCT-116, MCF-7, HepG2, and A549). The CDK2/cyclin A2 enzyme inhibitory results revealed that pyridone 1, 2-chloro-6-(naphthalen-2-yl)-4-(thiophen-2-yl)nicotinonitrile (4), 6-(naphthalen-2-yl)-4-(thiophen-2-yl)-1H-pyrazolo[3,4-b]pyridin-3-amine (8), S-(3-cyano-6-(naphthaen-2-yl)-4-(thiophen-2-yl)pyridin-2-yl) 2-chloroethanethioate (11), and ethyl 3-amino-6-(naphthalen-2-yl)-4-(thiophen-2-yl)furo[2,3-b]pyridine-2-carboxylate (14) are among the most active inhibitors with IC50 values of 0.57, 0.24, 0.65, 0.50, and 0.93 µM, respectively, compared to roscovitine (IC50 0.394 μM). Most compounds showed significant inhibition on different human cancer cell lines (HCT-116, MCF-7, HepG2, and A549) with IC50 ranges of 31.3–49.0, 19.3–55.5, 22.7–44.8, and 36.8–70.7 μM, respectively compared to doxorubicin (IC50 40.0, 64.8, 24.7 and 58.1 µM, respectively). Furthermore, a molecular docking study suggests that most of the target compounds have a similar binding mode as a reference compound in the active site of the CDK2 enzyme. The structural requirements controlling the CDK2 inhibitory activity were determined through the generation of a statistically significant 2D-QSAR model.
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- 2021
17. Synthesis, Docking Studies into CDK-2 and Anticancer Activity of New Derivatives Based Pyrimidine Scaffold and Their Derived Glycosides
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Wael A El Sayed, Hanem M. Awad, Dina S. El-kady, Amira K. F. Shaban, Ibrahim F. Nassar, and Adel A H Abdel Rahman
- Subjects
Pyrimidine ,Stereochemistry ,Antineoplastic Agents ,010402 general chemistry ,01 natural sciences ,Cell Line ,chemistry.chemical_compound ,Cyclin-dependent kinase ,Drug Discovery ,Pyrimidinedione ,Humans ,Glycosides ,Thiazole ,Protein Kinase Inhibitors ,Cell Proliferation ,Pharmacology ,biology ,Bicyclic molecule ,010405 organic chemistry ,Cyclin-Dependent Kinase 2 ,Active site ,Hep G2 Cells ,General Medicine ,0104 chemical sciences ,Molecular Docking Simulation ,Pyrimidines ,chemistry ,Docking (molecular) ,Acetylation ,biology.protein ,Drug Screening Assays, Antitumor - Abstract
Background & Objective:New diaryl-substituted pyrimidinedione compounds, their thioxo derivatives as well as their bicyclic thiazole compounds were synthesized and characterized.Methods:The glycosylamino derivatives of the synthesized disubstituted derivatives of the pyrimidine scaffold were also prepared via reaction of the N3-amino derivatives with a number of monosaccharides followed by acetylation.Results:The anticancer activity of the synthesized compounds was studied against human liver cancer (HepG2) and RPE-1cell lines. Compounds 2a, 2b, 3a and 12 showed potent activities with IC50 results comparable to that of doxorubicin.Conclusion:Docking investigations into Cyclin-dependent kinase 2 (CDK-2) enzyme, a potential target for cancer medication, were also reported showing the possible binding interaction into the enzyme active site to support their activity behavior.
- Published
- 2019
18. Synthesis and Anticancer Activity of New Substituted Piperidinones Linked to Pyrimidine, Thiazole, and Triazole Glycoside Derivatives
- Author
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Ibrahim F. Nassar, Hanem M. Awad, Wael A. El-Sayed, Nabil M. Yousif, and M. N. M. Yousif
- Subjects
chemistry.chemical_classification ,Pyrimidine ,010405 organic chemistry ,Triazole ,Glycoside ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,In vitro ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,MCF-7 ,MTT assay ,Thiazole ,Triazine - Abstract
New piperidinone incorporating pyrimidine, triazine, diazipine, oxatriazine, and thiazole derivatives have been synthesized starting with tetramethylpipridin-4-one. Structures of the newly synthesized compounds are characterized on the basis of spectroscopic and analytical data. The anticancer activity of the prepared compounds has been studied in vitro against HCT-116 and MCF-7 human cancer cells using the MTT assay. A number of compounds demonstrates potent activity towards both cell lines with IC50 values comparable with doxorubicin.
- Published
- 2019
19. Synthesis and Anticancer Activity of New ((Furan-2-yl)-1,3,4-thiadiazolyl)-1,3,4-oxadiazole Acyclic Sugar Derivatives
- Author
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Hanem M. Awad, Ibrahim F. Nassar, Asmaa F. Kassem, Wael A. El-Sayed, and Mohammed T. Abdel-Aal
- Subjects
Stereochemistry ,Oxadiazole ,Hydrazone ,Antineoplastic Agents ,010402 general chemistry ,Hydrazide ,01 natural sciences ,Nucleobase ,Structure-Activity Relationship ,chemistry.chemical_compound ,Furan ,Thiadiazoles ,Drug Discovery ,Humans ,Furans ,Sugar ,Cells, Cultured ,Cell Proliferation ,chemistry.chemical_classification ,Oxadiazoles ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Hep G2 Cells ,General Chemistry ,General Medicine ,0104 chemical sciences ,chemistry ,Aldose ,Doxorubicin ,Acetylation ,Drug Screening Assays, Antitumor ,Sugars - Abstract
New sugar hydrazones incorporating furan and/or 1,3,4-thiadiazole ring systems were synthesized by reaction of the corresponding hydrazide with different aldose sugars. Heterocyclization of the formed hydrazones afforded the derived acyclic nucleoside analogues possessing the 1,3,4-oxadiazoline as modified nucleobase via acetylation followed by the heterocyclization process. The anticancer activity of the synthesized compounds was studied against human liver carcinoma cell (HepG-2) and at human normal retina pigmented epithelium cells (RPE-1). High activities were revealed by compounds 3, 12 and 14 with IC50 values near to that of the reference drug doxorubicin.
- Published
- 2019
20. Synthesis of indole-2-carbohydrazides and 2-(indol-2-yl)-1,3,4-oxadiazoles as antioxidants and their acetylcholinesterase inhibition properties
- Author
-
Hakan Kandemir, Mehmet Boga, Mehmet F. Saglam, Murat Bingul, and Ibrahim F. Sengul
- Subjects
Indole test ,ABTS ,Antioxidant ,010405 organic chemistry ,Chemistry ,DPPH ,medicine.medical_treatment ,General Chemistry ,Carbon-13 NMR ,Carbohydrazide ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Acetylcholinesterase ,0104 chemical sciences ,chemistry.chemical_compound ,medicine ,Butyrylcholinesterase - Abstract
A range of novel 4,6-dimethoxy-1H-indole-2-carbohydrazides was prepared starting from methyl 4,6-dimethoxy-1H-indole-2-carboxylate which underwent cyclodehydration to generate the corresponding 2-(indol-2-yl)-1,3,4-oxadiazole scaffolds in the presence of N,N-diisopropylethylamine and p-toluenesulfonyl chloride in acetonitrile. All novel compounds were fully characterized by 1H NMR, 13C NMR, FT-IR, and high-resolution mass spectroscopic data. Biological importance of the designated compounds was identified by employing three different antioxidant property determination assays, namely DPPH free radical scavenging, ABTS cationic radical decolarization, and cupric reducing antioxidant capacity (CUPRAC). The anticholinesterase properties were also evaluated by the acetylcholinesterase and butyrylcholinesterase enzyme inhibition assays. According to the results, the indole compounds possessing carbohydrazide functionality were found to be more promising antioxidant targets than the 2-(indol-2-yl)-1,3,4-oxadiazole systems. Nʹ-Benzoyl-4,6-dimethoxy-1H-indole-2-carbohydrazide, a member of the dimethoxyindole-2-carbohydrazide group, demonstrated a better inhibition performance than the standards. Additionally, extremely important results were obtained in the anticholinesterase enzyme inhibition assays in the case of 2-(indol-2-yl)-1,3,4-oxadiazole derivatives.
- Published
- 2019
21. Synthesis, photophysical and antioxidant properties of carbazole-based bis-thiosemicarbazones
- Author
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Murat Bingul, Elif Şenkuytu, Ibrahim F. Sengul, Hakan Kandemir, Mehmet F. Saglam, and Mehmet Boga
- Subjects
Schiff base ,Antioxidant ,ABTS ,010405 organic chemistry ,DPPH ,Carbazole ,medicine.medical_treatment ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Mechanism of action ,medicine ,medicine.symptom ,Butyrylcholinesterase ,Nuclear chemistry - Abstract
Utilizing Schiff base condensation of the 9-ethylcarbazole-3,6-dicarbaldehyde and thiosemicarbazides, four new N-ethylcarbazole-based bis-thiosemicarbazone compounds 4a–d were successfully synthesized in high yields. The photophysical properties of the targeted compounds 4a–d were investigated using UV–vis absorption and fluorescence emission spectroscopy. The antioxidant properties of targeted compounds 4a–d were determined by DPPH radical scavenging, ABTS Cation Radical Decolarization and CUPRAC Cupric Reducing Antioxidant Capacity assay methods. Moreover, the anti-cholinesterase properties of designated compounds were investigated by the Acetylcholinesterase (Ach) and Butyrylcholinesterase (BCh) enzyme inhibition assays. The compound 4a was determined as a valuable candidate to be a potent antioxidant agent for the DPPH and ABTS assays. The compound 4d was found to be a target compound for the kinetic measurements to identify the mechanism of action in the area of anticholinesterase activity assay.
- Published
- 2019
22. Design, Synthesis, and Anticancer Activity of New Oxadiazolyl‐Linked and Thiazolyl‐Linked Benzimidazole Arylidines, Thioglycoside, and Acyclic Analogs
- Author
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Ibrahim F. Nassar, Wael A. El-Sayed, Hanem M. Awad, and Dina S. El kady
- Subjects
Benzimidazole ,chemistry.chemical_compound ,chemistry ,Design synthesis ,Organic Chemistry ,Combinatorial chemistry - Published
- 2019
23. Meso-piperidine linked bodipys: Synthesis, fluorescent properties and biological evaluation
- Author
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Hakan Kandemir, Hasan Hüseyin Kazan, Ibrahim F. Sengul, Esra Tanrıverdi Eçik, and Bünyemin Çoşut
- Subjects
Biophysics ,Quantum yield ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Fluorescence ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Benzaldehyde ,chemistry.chemical_compound ,chemistry ,Live cell imaging ,Alkoxy group ,Knoevenagel condensation ,Piperidine ,BODIPY ,0210 nano-technology - Abstract
The synthesis and characterization of meso-piperidine linked Bodipy starting from 4-(2-(piperidine-1-yl)ethoxy)benzaldehyde was described. Meso-piperidine linked Bodipy was subsequently used for the construction of distyryl-piperidine-Bodipy and distyryl-morpholine-Bodipy via Knoevenagel type reaction. The photophysical properties including molar extinction coefficient, fluorescence lifetime and fluorescence quantum yield of Bodipys were investigated in ethanol solution. The targeted compounds were also assessed in live cell imaging and cytotoxicity studies by using breast cancer cell line, MCF-7 in vitro.
- Published
- 2019
24. Synthesis of dipyrrolo[2,3-a:1′,2′,3′-fg]acridin-12(1H)-ones
- Author
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Daniel S. Wenholz, Mohan M. Bhadbhade, Chao-wei Leu, Renée L. Beyer, Hakan Kandemir, Ibrahim F. Sengul, Naresh Kumar, and David StC. Black
- Subjects
chemistry.chemical_classification ,Base (chemistry) ,010405 organic chemistry ,Organic Chemistry ,Decarbonylation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Acylation ,chemistry.chemical_compound ,chemistry ,Drug Discovery ,Organic chemistry ,Graphite ,Methanol - Abstract
Acylation reactions of 4,6-dimethoxyindoles with glyoxyloyl chlorides were achieved by the use of graphite powder in 1,2-dichloroethane at reflux. The products were monoketones as a result of decarbonylation, rather than the expected 1,2-diketones. Treatment of these monoketones with base led to their cyclisation and elimination of methanol to afford the novel dipyrrolo[2.3-a:1′,2′,3′-fg]acridin-12(1H)-ones.
- Published
- 2018
25. Synthesis of Eco-Friendly Biopolymer, Alginate-Chitosan Composite to Adsorb the Heavy Metals, Cd(II) and Pb(II) from Contaminated Effluents
- Author
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Doaa M. Hamad, Mahmoud M. Hessien, Mohammed F. Hamza, Yuezhou Wei, Waheed M. Salem, Amr Fouda, Adel A.-H. Abdel-Rahman, Mahmoud S. Khalafalla, Nora A. Hamad, and Ibrahim F. Zeid
- Subjects
Langmuir ,Technology ,Sorbent ,02 engineering and technology ,engineering.material ,010402 general chemistry ,eco-friendly sorbent ,01 natural sciences ,Article ,cost-effective biopolymers ,Metal ,Chitosan ,chemistry.chemical_compound ,Adsorption ,General Materials Science ,Microscopy ,QC120-168.85 ,Chemistry ,QH201-278.5 ,Sorption ,021001 nanoscience & nanotechnology ,Engineering (General). Civil engineering (General) ,0104 chemical sciences ,TK1-9971 ,cadmium and lead contamination ,contaminated water treatment ,Descriptive and experimental mechanics ,visual_art ,visual_art.visual_art_medium ,engineering ,Water treatment ,Biopolymer ,Electrical engineering. Electronics. Nuclear engineering ,TA1-2040 ,0210 nano-technology ,Nuclear chemistry - Abstract
Efficient removal of Cd(II) and Pb(II) from contaminated water is considered a fundamental point of view. Synthetic hydrogel biopolymers based on chitosan and alginate (cost-effective and eco-friendly) were successfully designed and characterized by highly efficient removal contaminants. The sorbents are characterized by FTIR, SEM-EDX, TGA, XPS analyses and textural properties which are qualified by N2 adsorption. The sorption properties are firstly investigated by the effect of pH, sorption isotherms, uptake kinetics, and selectivity from multi-metal solution with equi-molar concentration. The sorbent with 1:3 ratios (of chitosan and alginate respectively) is the most effective for metal removal (i.e., 0.81 mmol Cd g−1 and 0.41 mmol Pb g−1). Langmuir and Sip’s models fitted better the adsorption isotherms compared to the Freundlich model. Uptake kinetics was well fitted by pseudo-first-order rate equation, while the saturation was achieved within 40 min. The sorbent shows good reproducibility through duplicate the experiments with negligible decreasing efficiency (>, 2.5%). The sorbent was applied for water treatment on samples collected from the industrial area (i.e., 653 and 203 times over the MCL for Cd(II) and Pb(II) respectively according to WHO). The concentration of Cd and Pb was drastically decreased in the effluents as pH increased with removal efficiency up to 99% for both elements at pH 5.8 and SD equivalent 1 g L−1 for 5 h.
- Published
- 2021
26. Synthesis and characterization of CuO nanoparticles stabilized by quercetin and its application for anti-breast cancer activity
- Author
-
Falah M. Fakhree, Ibrahim F. Waheed, and Kamal M. Mahmoud
- Subjects
Pigment ,chemistry.chemical_compound ,chemistry ,Transmission electron microscopy ,Bromide ,visual_art ,visual_art.visual_art_medium ,Particle ,Chelation ,Crystallite ,Quercetin ,Monoclinic crystal system ,Nuclear chemistry - Abstract
The main idea in this research used quercetin (QT) as a stabilizing agent to prepare CuO nanoparticle (NPs). QT is a pigment which exists from plants, fruits, and in some medicines. It contains numerous hydroxyl groups, works as a complexing agent and a self-assembly agent. The prepared CuO-NPs were characterized by fourier transformed infrared (FT-IR), X-ray diffraction (XRD), scanning and transmission electron microscopy (SEM and TEM), and energy-dispersive X-ray analysis (EDX). The structure investigation confirm that the CuO-NPs were polycrystalline nature having a monoclinic crystalline form and showed (111) and (111) preferential orientations. The estimated particle sizes by XRD, TEM, and SEM ranged from 12.03 to 15.3 nm. Surface analysis displayed that homogeneously distributed CuO-NPs with a spherical shape. On the other hand, the synthesized CuO-NPs were tested for anticancer activity on the human Breast. The infected cell (MCF-7) uses MTT (3-(4,5-dimethyl-2-triazolyl)-2,5-diphenyl-2-tetrazolium bromide) test. The inferred CuO-NPs clarify high anticancer cytotoxicity of the (MCF-7) with an IC50 μM value of 57.6 and 42.8 µg/mL for 24 and 72 h respectively.
- Published
- 2021
27. Green Tea; Best Way to Struggle Lipid
- Author
-
Madi MF, Ibrahim F, Elsayed AG, Elgendy LM, Emara EA, Hawda S, and Attitalla I
- Subjects
medicine.medical_specialty ,business.industry ,Fatty liver ,food and beverages ,Blood lipids ,Epigallocatechin gallate ,medicine.disease ,Obesity ,chemistry.chemical_compound ,Endocrinology ,Blood pressure ,chemistry ,Internal medicine ,Hyperlipidemia ,medicine ,Lipolysis ,Ghrelin ,business - Abstract
Introduction: Tea is one of the most common famous drink used daily in many countries in the world. Green tea contains polyphenolic compounds as catechins, that contains epigallocatechin gallate (EGCG). The lowering of plasma cholesterol levels and blood pressure as well as improvement of insulin sensitivity and endothelial function by green tea. Aim of the work: Study the effect of green tea on obesity, blood lipid level and its effect on fatty liver. Materials and Methods: All animal procedures were approved by the ethical committee of Faculty of Medicine, Tanta University. Thirty male Albino rats in the range of 230–280 g body weight was used in this study. All subjects were kept in an animal room of Physiology Department of Faculty of Medicine, Tanta University, in a controlled temperature and 12:12 h light/dark cycle with free access to food and water. The animals were divided into 3 groups of 10 animals each. Group-1: the sham group (sham operated, no obesity). Group-2: the vehicle group (obesity induced rats treated with normal saline). Group-3: the ghrelin group (obesity induced rats treated with EGCG). Results: Body weight, fat deposits, adiposity index and serum cholesterol increased significantly in a time-dependent manner in obese and control animals but were higher in the obese group (HFD > SD). High fat diet caused significant increases in the serum cholesterol level indicating high body lipid and obesity but when EGCG was administered after the beginning of high fat diet, these elevations were significantly depressed. Conclusion: In conclusion, since the administration of EGCG increase lipolysis and the accumulation of neutrophils in the damaged hepatic tissue, this agent appears to play a cytoprotective role in the liver insulted by fatty infiltration with obesity. It seems likely that Green tea (EGCG) is put in consideration as a potential therapeutic agent against obesity and hyperlipidemia.
- Published
- 2021
28. Vinpocetine attenuates thioacetamide-induced liver fibrosis in rats
- Author
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Ibrahim F Komber, Rehab S. Abdelrahman, Rawan H Elweshahy, Asmaa E Nashy, Ahmed A Elnfarawy, and Alaa M Abozaid
- Subjects
0301 basic medicine ,Liver Cirrhosis ,Male ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,Vincamine ,Pharmacology ,Thioacetamide ,Toxicology ,medicine.disease_cause ,Nitric Oxide ,Protective Agents ,Vinca alkaloid ,Rats, Sprague-Dawley ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Vinpocetine ,Fibrosis ,Malondialdehyde ,Medicine ,Animals ,Vinca Alkaloids ,Liver injury ,business.industry ,Interleukin-6 ,Superoxide Dismutase ,Tumor Necrosis Factor-alpha ,General Medicine ,medicine.disease ,Glutathione ,Oxidative Stress ,030104 developmental biology ,chemistry ,Liver ,030220 oncology & carcinogenesis ,business ,Hepatic fibrosis ,Oxidative stress ,medicine.drug - Abstract
Liver fibrosis is associated with increased mortality and morbidity. However, there is not effective treatment so far. Vinpocetine (Vinpo) is a synthetic derivative of vinca alkaloid vincamine. Limited previous reports have shown some beneficial effects of Vinpo in different organ fibrosis, but the ability of Vinpo to inhibit liver fibrosis induced by thioacetamide (TAA) has not been reported, that is why we investigate the potential ability of this vinca alkaloid derivative to attenuate liver fibrosis. Hepatic fibrosis was induced in male Sprague Dawley rats by TAA (200 mg/kg; ip; 3 times/week) for 6 weeks. Daily treatments with Vinpo (10–20 mg/kg/day; orally) ameliorated TAA-induced hepatic oxidative stress and histopathological damage as indicated by a decrease in liver injury markers, LDH, hepatic MDA, and NOx levels, as well as increase anti-oxidative parameters. Besides, the anti-fibrotic efficacy of Vinpo was confirmed by decreasing hydroxyproline, and α-SMA. Also, the anti-inflammatory effect of Vinpo was explored by decreasing IL-6 and TNF-α levels. Our novel findings were that Vinpo decreased VEGF/Ki-67 expression in the liver confirming its effect on angiogenesis and proliferation. These findings reveal the anti-fibrotic effect of Vinpo against TAA-induced liver fibrosis in rats, and suggest the modulation of oxidative stress, inflammation, angiogenesis and proliferation as mechanistic cassette underlines this effect.
- Published
- 2020
29. Evidence for an expanded repertoire of electron acceptors for the anaerobic oxidation of methane in authigenic carbonates in the Atlantic and Pacific Ocean
- Author
-
Sabrina Beckmann, Ibrahim F. Farag, Glenn D. Christman, Jennifer F. Biddle, Nancy G. Prouty, and Rui Zhao
- Subjects
chemistry.chemical_compound ,Syntrophy ,biology ,Chemistry ,Environmental chemistry ,Anaerobic oxidation of methane ,Gammaproteobacteria ,Authigenic ,Sulfate-reducing bacteria ,biology.organism_classification ,Methane ,Cold seep ,Archaea - Abstract
Authigenic carbonates represent a significant microbial sink for methane, yet little is known about the microbiome responsible for the methane removal. We identify carbonate microbiomes distributed over 21 locations hosted by 7 different cold seeps in the Pacific and Atlantic Oceans by carrying out a gene-based survey using 16S rRNA- andmcrA gene sequencing coupled with metagenomic analyses. These sites were dominated by bacteria affiliated to the Firmicutes, Alpha- and Gammaproteobacteria. ANME-1 and −2 clades were abundant in the carbonates yet their typical syntrophic partners, sulfate reducing bacteria, were not significantly present. Our analysis indicated that methane oxidizers affiliated to the ANME-1 and −2 as well as to theCandidatusMethanoperedens clades, are capable of performing complete methane- and potentially short-chain alkane oxidations independently using oxidized sulfur and nitrogen compounds as terminal electron acceptors. Gammaproteobacteria are hypothetically capable of utilizing oxidized nitrogen compounds in potential syntrophy with methane oxidizing archaea. Carbonate structures represent a window for a more diverse utilization of electron acceptors for anaerobic methane oxidation along the Atlantic and Pacific Margin.
- Published
- 2020
30. Synthesis of new uracil derivatives and their sugar hydrazones with potent antimicrobial, antioxidant and anticancer activities
- Author
-
Ahmed F. El Farargy, Zeinab Hamza, Fathy M. Abdelrazek, and Ibrahim F. Nassar
- Subjects
Staphylococcus aureus ,Antioxidant ,Antifungal Agents ,DPPH ,medicine.medical_treatment ,Antineoplastic Agents ,Microbial Sensitivity Tests ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Antioxidants ,chemistry.chemical_compound ,Structure-Activity Relationship ,Bacillus cereus ,Picrates ,Salmonella ,Genetics ,medicine ,Tumor Cells, Cultured ,Organic chemistry ,Humans ,Ethyl chloroacetate ,Uracil ,Cell Proliferation ,Yersinia enterocolitica ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Biphenyl Compounds ,Hydrazones ,General Medicine ,Hep G2 Cells ,Triethyl orthoformate ,Antimicrobial ,Listeria monocytogenes ,0104 chemical sciences ,Anti-Bacterial Agents ,Acetic anhydride ,MCF-7 Cells ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Antibacterial activity ,Sugars ,Aspergillus flavus - Abstract
6-(4-Chloro-3-nitrophenyl)-4-oxo-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carbonitrile (4) was prepared and was reacted with ethyl chloroacetate, hydrazine hydrate, 4-chloroaniline, formaldehyde, acetic anhydride, formic acid, carbon disulfide, 4-cyanobenzaldehyde, triethyl orthoformate, D-sugars, 4-aminoacetophenone, benzoyl choride and cyclohexanone to afford a series of new uracil derivatives (5-18). Examination of some of the prepared compounds for their antimicrobial, antioxidant and anticancer activities was conducted. Among the tested samples, compound 17 was the most active substance against the gram-positive bacteria and was more potent than the reference drug Cefoperazone. Moreover, the antibacterial activity of 17 was higher against gram-negative bacteria. Compounds 6 and 13 reached a higher scavenging ability toward DPPH radicals and are better candidates for antioxidant activity. Also, compounds 6 and 13 had no significant anticancer activity toward liver cancer (Hep G2) and breast cancer (MCF-7) cell lines.
- Published
- 2020
31. Design, synthesis and anti-inflammatory vel 5-(Indol-3-yl)thiazolidinone derivatives as COX-2 inhibitors
- Author
-
Ibrahim F. Nassar, Wael A. El-Sayed, and Saad R. Atta-Allah
- Subjects
chemistry.chemical_classification ,medicine.drug_class ,Stereochemistry ,Thiazolidine ,Anti-inflammatory ,chemistry.chemical_compound ,Enzyme ,chemistry ,Design synthesis ,Docking (molecular) ,Ic50 values ,medicine ,Arachidonic acid ,Prostaglandin H2 - Abstract
New N-substituted 5-(oxoindolinyl)-2-thioxothiazolidinone derivatives were synthesized. The C2- substituted thiazolidinone derivatives with piperidinyl and morpholinyl moieties in addition to the tetracyclic [(oxindolo) pyrazino] thiazolidine, the chloro-and amino-derivatives of the (indolyl) thiazolidinone ring system were also prepared. The COX-2 inhibition activity of the synthesized compounds was investigated by studying their ability to inhibit the conversion of arachidonic acid to prostaglandin H2 (PGH2). Five of the tested candidates, substituted (oxonidolyl) thiazolidine derivatives (3a, 6f, 8b, 10 and 12) showed significant COX-2 inhibitory activity exhibiting IC50 values better than or close to the reference celecoxib. The anti-inflammatory activity was studied revealing that a number of compounds have shown good activities and compound 10 produced no significant mucosal injury. Molecular docking study was implemented to interpret the variable inhibitory activity of the newly synthesized compounds against COX enzyme. The results suggested that some of these derivatives could be active COX inhibitors possessing a high preference for COX-2.
- Published
- 2020
32. Synthesis of 7-azaindole based carbohydrazides and 1,3,4-oxadiazoles; Antioxidant activity, α-glucosidase inhibition properties and docking study
- Author
-
Fatma Cebeci, Engin Şahin, Hakan Kandemir, Ibrahim F. Sengul, Mehmet Serdar Koca, and Samet Izgi
- Subjects
chemistry.chemical_classification ,Antioxidant ,medicine.medical_treatment ,Organic Chemistry ,Carbon-13 NMR ,Mass spectrometry ,Hydrazide ,Combinatorial chemistry ,Analytical Chemistry ,Inorganic Chemistry ,Acetic anhydride ,chemistry.chemical_compound ,Enzyme ,chemistry ,Docking (molecular) ,medicine ,Proton NMR ,Spectroscopy - Abstract
In this current work, 7-azaindole based 1,3,4-oxadiazoles have been successfully prepared by treatment of 3-(hydrazonomethyl)-7-azaindole with the different acyl chlorides or acetic anhydrides to give the corresponding carbohydrazides, followed by iodine mediated synthetic protocol in order to afford the corresponding 2,5-disubstituted 1,3,4-oxadiazoles. The full characterization data of the novel compounds were obtained by utilizing 1H NMR, 13C NMR, FT-IR, high-resolution mass spectrometry and single crystal X-ray diffraction techniques. The antioxidant activity and α-glucosidase inhibition potential of the prepared compounds are examined by in vitro assays. The targeted hydrazide linked 7-azaindoles and their corresponding cyclized form 1,3,4-oxadiazoles exhibited inhibitory potential with IC50 values ranges between 0.46 and 24.92 mM. Plausible binding mode and interaction of ligands with α-glucosidase enzyme have been studied by molecular docking, supporting the experimental results.
- Published
- 2022
33. Study of electrical properties of a reduced graphene-oxadiazole-2-thiol (rGS) PVA polymer composite
- Author
-
Ibrahim F. Waheed, Emaad T. B. Al-Tikrity, and Sabah M. Ali
- Subjects
chemistry.chemical_classification ,Materials science ,Polymers and Plastics ,Graphene ,Oxadiazole ,02 engineering and technology ,Dielectric ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,law ,Materials Chemistry ,Ceramics and Composites ,Thiol ,Polymer composites ,0210 nano-technology ,Derivative (chemistry) - Abstract
This work reports the synthesis and characterisation of reduced graphene-1,3,4-oxadiazole-2-thiol (rGS) as a novel nanocompound derivative for graphene. The preparation was performed through a series of reactions starting from graphene oxide, followed by incorporation of different proportions of this nanocompound with poly(vinyl alcohol) (PVA), via non-covalent bonding, to afford the rGS/PVA polymer composites. The pure rGS compound, rGS/PVA composite films and pure PVA film were characterised by different techniques including infrared (Fourier transform infrared) spectroscopy, scanning electron microscopy and powder x-ray diffraction. The electrical properties of the composite films, involving dielectric constant, permittivity ( ε′), imaginary permittivity ( ε″), conductivity (σAC) and loss factor tan δ, were investigated. The measurements were performed at frequencies of (5kHz to 0.5 MHz) at room temperature. At low frequency, the dielectric permittivity ( ε′) and imaginary permittivity ( ε″) attained higher values in all cases, although with increasing frequency these values diminished rapidly. It was also found that the alternating current conductivity of the composites increased with increasing frequency.
- Published
- 2018
34. Synthesis of Methylene Bridged Bis-pyrrolo[3,2-c]carbazoles via an Unusual Vilsmeier–Haack Product of N-Ethylcarbazole
- Author
-
Ibrahim F. Sengul, Hakan Kandemir, and Mehmet F. Saglam
- Subjects
chemistry.chemical_compound ,Polymers and Plastics ,010405 organic chemistry ,Chemistry ,Product (mathematics) ,Organic Chemistry ,Materials Chemistry ,Methylene ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences ,Formylation - Abstract
The unexpected result for the formylation of N-ethylcarbazole under the Vilsmeier–Haack conditions (POCl3/DMF) led to the synthesis of novel methylene bridged bis-pyrrolo[3,2-c]carbazoles via Hemetsberger indole synthesis was reported. A plausible mechanism for the formation of unexpectedly synthesized 7,7′-methylene bis(9-ethyl-9H-carbazole-3-carbaldehyde) 4 was postulated. The full characterization data of dicarbazolylmethane 4 and the bis-pyrrolo carbazoles 10a-b were obtained by utilizing 1H NMR, 13C NMR, FT-IR, mass spectrometry and single crystal X-ray diffraction techniques.
- Published
- 2018
35. MOLECULAR BIOLOGICAL STUDIES ON THE EFFECT OF GREEN TEA ON OBESE RATS
- Author
-
Mahmoud El-Sebaei, Ibrahim F. Hassan, Mohamed El-Adl, Asmaa Nabih, and Khaled A. Kahilo
- Subjects
Cardiac function curve ,Biological studies ,medicine.diagnostic_test ,food and beverages ,Epigallocatechin gallate ,medicine.disease ,Green tea ,Obesity ,chemistry.chemical_compound ,chemistry ,Polyphenol ,medicine ,High fat ,Food science ,Lipid profile - Abstract
The current study was conducted on 70 male albino rats for elucidation the role of different green tea either local (E) or imported (C) and capsulated like green tea (CAP) as well as two common active principle Epigallocatechin gallate (EPI) and polyphenols (POL) on high fat ration (HFR) fed rats. The results showed that EPI and POL were showing a significant improvement in lipid profile and anti-oxidant status of rats. Meanwhile, EPI and CAP groups revealed the highest improvement in kidney function, while the Egyptian, Chinese green tea leaves and POL groups showed a significant enhancement in hepato-billiary system. All the studied groups revealed a significant improvement in cardiac function. Moreover, MEST relative expression increased in HFR group and showed a significant down-regulation in all green tea groups but EPI revealed the lowest relative expression in MEST which suggested its effect on improving obesity in rats.
- Published
- 2017
36. Development and validation of a reliable LC-MS/MS method for simultaneous determination of deoxynivalenol and T-2 toxin in maize and oats
- Author
-
Randa N. Yamani, Ibrahim F. Tahoun, Adel B. Shehata, and Mohamed A. Gab-Allah
- Subjects
Reproducibility ,Coefficient of determination ,Chromatography ,Chemistry ,Trichothecene ,Repeatability ,High-performance liquid chromatography ,Analytical Chemistry ,chemistry.chemical_compound ,media_common.cataloged_instance ,Solid phase extraction ,European union ,Mycotoxin ,Spectroscopy ,media_common - Abstract
Herein, a new analytical method for sensitive, rapid and reliable determination of two major trichothecenes: deoxynivalenol (DON) and T-2 toxin (T2) in maize and oats has been successfully established and validated. Acetonitrile/water mixture was used for sample extraction, and two solid phase extraction clean-up routes (i.e., Oasis HLB cartridges and MycoSep 227 columns) were investigated for optimal recoveries and adequate clean-up efficiency. The investigated mycotoxins were separated by ultra-performance liquid chromatography (UPLC) system and quantified by triple quadrupole mass spectrometry (MS/MS) using an electro spray-ionization interface (ESI) operating in positive polarity. MRM experiments were optimized for each trichothecene to generate high sensitive transitions. The method was validated according to European Union Directive: 2002/657/EC. Matrix-matched calibration demonstrated nice linearity in the concentration range of 5–200 µg/kg (T2) and 10–800 µg/kg (DON) with a coefficient of determination (R2) of >0.999. Fortified samples covering the same concentration ranges yielded average recovery values ranged from 85.0 to 95.3% with relative standard deviation (RSD) for the repeatability and reproducibility of
- Published
- 2021
37. Light harvesting systems composed of carbazole based subphthalocyanine-BODIPY enhanced with intramolecular fluorescence resonance energy transfer (FRET)
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Esra Tanrıverdi Eçik, Hakan Kandemir, Ibrahim F. Sengul, Emrah Özcan, and Bünyemin Çoşut
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010405 organic chemistry ,Chemistry ,Carbazole ,Process Chemistry and Technology ,General Chemical Engineering ,010402 general chemistry ,Photochemistry ,Mass spectrometry ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,chemistry.chemical_compound ,Förster resonance energy transfer ,Intramolecular force ,Moiety ,Time-resolved spectroscopy ,BODIPY - Abstract
A new series of subphthalocyanine-borondipyrromethene scaffolds containing N -ethylcarbazole moiety have been successfully designed and synthesized. The identities of synthesized compounds were confirmed by using 1 H, 13 C NMR, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The photophysical properties of the newly synthesized subphthalocyanine-borondipyrromethene conjugates were investigated via absorption and fluorescence spectroscopies in dichloromethane, tetrahydrofuran, benzene, and toluene solution (1 × 10 −5 M). The targeted compounds exhibit a highly efficient energy transfer process, either from the excited borondipyrromethene to the subphthalocyanine core or from the excited subphthalocyanine to the mono or distyryl borondipyrromethene unit. The time resolved fluorescence studies of the subphthalocyanine- borondipyrromethene conjugates were also examined.
- Published
- 2017
38. Clades of huge phage from across Earth’s ecosystems
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Lesley A. Warren, Jennifer A. Doudna, Keith Bouma-Gregson, Rohan Sachdeva, Anne-Catherine Lehours, Christine He, Jamie H. D. Cate, Jinglie Zhou, Ray Keren, Alex D. Thomas, Fred R. Ward, Patrick Munk, Joanne M. Santini, Mary E. Power, Susan T.L. Harrison, Cindy J. Castelle, Alexander J. Probst, Raphaël Méheust, Christine L. Sun, Kari M. Finstad, Adi Lavy, Kelly C. Wrighton, Mikayla A. Borton, Lin-Xing Chen, Jillian F. Banfield, Karthik Anantharaman, Yuki Amano, Brandon Brooks, Ibrahim F. Farag, Daniela S. Aliaga Goltsman, David A. Relman, Ronald Amundson, Alexander L. Jaffe, Paula Matheus-Carnevali, Matthew R. Olm, Wen-Jun Li, Shufei Lei, Audra E. Devoto, Susannah G. Tringe, Tara Colenbrander Nelson, Basem Al-Shayeb, Michael J. Morowitz, and Rose S. Kantor
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0303 health sciences ,TRNA modification ,030306 microbiology ,viruses ,Translation (biology) ,15. Life on land ,Biology ,Genome ,03 medical and health sciences ,chemistry.chemical_compound ,Eukaryotic translation ,chemistry ,Ribosomal protein ,Evolutionary biology ,Transfer RNA ,Gene ,DNA ,030304 developmental biology - Abstract
Phage typically have small genomes and depend on their bacterial hosts for replication. DNA sequenced from many diverse ecosystems revealed hundreds of huge phage genomes, between 200 kbp and 716 kbp in length. Thirty-four genomes were manually curated to completion, including the largest phage genomes yet reported. Expanded genetic repertoires include diverse and new CRISPR-Cas systems, tRNAs, tRNA synthetases, tRNA modification enzymes, translation initiation and elongation factors, and ribosomal proteins. Phage CRISPR-Cas systems have the capacity to silence host transcription factors and translational genes, potentially as part of a larger interaction network that intercepts translation to redirect biosynthesis to phage-encoded functions. In addition, some phage may repurpose bacterial CRISPR-Cas systems to eliminate competing phage. We phylogenetically define major clades of huge phage from human and other animal microbiomes, oceans, lakes, sediments, soils and the built environment. We conclude that their large gene inventories reflect a conserved biological strategy, observed over a broad bacterial host range and across Earth’s ecosystems.
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- 2019
- Full Text
- View/download PDF
39. Synthesis, Photophysical And Antioxidant Properties Of Pyrrolo[3,2-C]Carbazole And Dipyrrolo[3,2-C:2,3-G]Carbazole Compounds
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Ibrahim F. Sengul, Mehmet Boga, Elif Şenkuytu, Hakan Kandemir, Murat Bingul, and Tugce Nur Uslu
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ABTS ,010405 organic chemistry ,Carbazole ,DPPH ,Cationic polymerization ,General Chemistry ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Fluorescence spectroscopy ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Carboxylate ,Tetrahydrofuran ,Nuclear chemistry - Abstract
The synthesis of (6-ethyl-1,6-dihydropyrrolo[3,2-c]carbazol-2-yl)methanol 5 and (6-ethyl-6,11-dihydro-1H-dipyrrolo[3,2-c:2,3-g]carbazole-2,10-diyl)dimethanol 6 were achieved via the reduction of methyl pyrrolo carbazole carboxylate 3 and methyl dipyrrolo carbazole carboxylate 4, respectively. The structures of hydroxymethyl-pyrrolocarbazoles 5 and 6 were supported by FT-IR, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, H-1 and C-13 NMR spectroscopy. The photophysical properties of the targeted compounds 3-6 were investigated by employing absorption and fluorescence spectroscopy in different common organic solvents. Also, the fluorescence lifetime ((F)) of the compounds was measured utilizing a time-correlated single-photon counting technique in tetrahydrofuran. Antioxidant activities of compounds 3-6 were determined by employing three different assays, namely DPPH radical scavenging, ABTS cation radical decolarization and cupric reducing antioxidant capacity. The results revealed that the ABTS cationic scavenging activity assay was found to be the most sensitive method for the determination of inhibition values.
- Published
- 2019
40. PI3K Inhibitors of Novel Hydrazide Analogues Linked 2-Pyridinyl Quinazolone Scaffold as Anticancer Agents
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Neama A. Mohamed, Mohamed A. Al-Omar, Ibrahim F. Zeid, Eman S. Nossier, Khaled A. Mahmoud, Nagy M. Khalifa, Emad M. M. Kassem, and Ahmed A. Salman
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Article Subject ,biology ,010405 organic chemistry ,Chemistry ,Kinase ,Active site ,General Chemistry ,Hydrazide ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,lcsh:Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,lcsh:QD1-999 ,Docking (molecular) ,030220 oncology & carcinogenesis ,biology.protein ,medicine ,Doxorubicin ,MTT assay ,IC50 ,PI3K/AKT/mTOR pathway ,medicine.drug - Abstract
A series of novel 2-(pyridin-4-yl)quinazolin-4(3H)-ones bearing different heterocycle cores as potential PI3K inhibitors have been synthesized and evaluated via the MTT assay for their antiproliferative properties against selected HePG-2, MCF-7, and HCT116 cancer cell lines. Among them, compound 9 displayed significant activity against HePG-2 (IC50 = 60.29 ± 1.06 μM) comparable to doxorubicin as a reference anticancer drug (IC50 = 69.60 ± 1.50 μM). Kinase inhibitory assessment of target products against PI3K and docking studies revealed the promising binding affinities which match with the binding mode of the ligand, SW13 towards the active site of PI3K. Therefore, this work represents a promising matrix for developing novel potential anticancer candidates.
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- 2019
41. Virological outcomes of boosted protease inhibitor-based first-line ART in subjects harbouring thymidine analogue-associated mutations as the sole form of transmitted drug resistance
- Author
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Geretti, AM, White, E, Orkin, C, Tostevin, A, Tilston, P, Chadwick, D, Leen, C, Sabin, C, Dunn, DT, Asboe, D, Pozniak, A, Cane, P, Churchill, D, Clark, D, Collins, S, Delpech, V, Douthwaite, S, Dunn, D, Fearnhill, E, Porter, K, Stirrup, O, Fraser, C, Gunson, R, Hale, A, Hue, S, Lazarus, L, Leigh-Brown, A, Mbisa, T, Mackie, N, Nastouli, E, Pillay, D, Phillips, A, Smit, E, Templeton, K, Volz, E, Williams, I, Zhang, H, Dawkins, J, O'Shea, S, Mullen, J, Cox, A, Tandy, R, Fawcett, T, Hopkins, M, Booth, C, Garcia-Diaz, A, Renwick, L, Schmid, ML, Payne, B, Hubb, J, Dustan, S, Kirk, S, Bradley-Stewart, A, Ainsworth, J, Allan, S, Anderson, J, Babiker, A, Gazzard, B, Gilson, R, Gompels, M, Hay, P, Hill, T, Johnson, M, Jose, S, Kegg, S, Martin, F, Mital, D, Nelson, M, Palfreeman, A, Post, F, Pritchard, J, Sabin, CA, Schwenk, A, Tariq, A, Trevelion, R, Ustianowski, A, Walsh, J, Thornton, A, Huntington, S, Glabay, A, Shidfar, S, Lynch, J, Hand, J, De Souza, C, Perry, N, Tilbury, S, Youssef, E, Mabika, T, Mandalia, S, Munshi, S, Adefisan, A, Taylor, C, Gleisner, Z, Ibrahim, F, Campbell, L, Baillie, K, Brima, N, Miller, S, Wood, C, Youle, M, Lampe, F, Smith, C, Tsintas, R, Chaloner, C, Hutchinson, S, Winston, A, Weber, J, Ramzan, F, Carder, M, Wilson, A, Morris, S, Lewszuk, A, Faleye, A, Ogunbiyi, V, Mitchell, S, Kemble, C, Russell-Sharpe, S, Gravely, J, Harte, A, Spencer, H, Jones, R, Cumming, S, Atkinson, C, Edgell, V, Allen, J, Murphy, C, and Gunder, I
- Subjects
0301 basic medicine ,Oncology ,Male ,HIV Infections ,Drug resistance ,Kaplan-Meier Estimate ,chemistry.chemical_compound ,0302 clinical medicine ,1108 Medical Microbiology ,Abacavir ,Antiretroviral Therapy, Highly Active ,INFECTION ,Pharmacology (medical) ,Pharmacology & Pharmacy ,030212 general & internal medicine ,Original Research ,Proteolytic enzymes ,Lamivudine ,virus diseases ,Viral Load ,Prognosis ,ANTIRETROVIRAL TREATMENT ,Infectious Diseases ,Treatment Outcome ,Cohort ,RNA, Viral ,Female ,1115 Pharmacology and Pharmaceutical Sciences ,UK HIV Drug Resistance Database and UK CHIC Study ,Life Sciences & Biomedicine ,Viral load ,0605 Microbiology ,medicine.drug ,Microbiology (medical) ,Adult ,medicine.medical_specialty ,Efavirenz ,Genotype ,TRANSMISSION ,Anti-HIV Agents ,030106 microbiology ,REGIMENS ,Emtricitabine ,Microbiology ,03 medical and health sciences ,Internal medicine ,Drug Resistance, Viral ,medicine ,Humans ,Protease Inhibitors ,Alleles ,Pharmacology ,Science & Technology ,TREATMENT-NAIVE PATIENTS ,business.industry ,HIV ,INDIVIDUALS ,chemistry ,Amino Acid Substitution ,Mutation ,HIV-1 ,business - Abstract
Objectives: In subjects with transmitted thymidine analogue mutations (TAMs), boosted PIs (PI/b) are often chosen to overcome possible resistance to the NRTI backbone. However, data to guide treatment selection are limited. Our aim was to obtain firmer guidance for clinical practice using real-world cohort data.Methods: We analysed 1710 subjects who started a PI/b in combination with tenofovir or abacavir plus emtricitabine or lamivudine, and compared their virological outcomes with those of 4889 patients who started an NNRTI (predominantly efavirenz), according to the presence of ≥1 TAM as the sole form of transmitted drug resistance.Results: Participants with ≥1 TAM comprised predominantly MSM (213 of 269, 79.2%), subjects of white ethnicity (206 of 269, 76.6%) and HIV-1 subtype B infections (234 of 269, 87.0%). Most (203 of 269, 75.5%) had singleton TAMs, commonly a revertant of T215Y or T215F (112 of 269, 41.6%). Over a median of 2.5 years of follow-up, 834 of 6599 (12.6%) subjects experienced viraemia (HIV-1 RNA >50 copies/mL). The adjusted HR for viraemia was 2.17 with PI/b versus NNRTI-based therapy (95% CI 1.88-2.51; P Conclusions: In this cohort, patients harbouring ≥1 TAM as the sole form of transmitted drug resistance gained no apparent virological advantage from starting first-line ART with a PI/b.
- Published
- 2018
42. Healthy human serum N-glycan profiling reveals the influence of ethnic variation on the identified cancer-relevant glycan biomarkers
- Author
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Daniel Seifu Melka, Toshiya Kamiyama, Abrha G. Gebrehiwot, Shin-Ichiro Nishimura, Yimenashu Mamo Kassaye, Ibrahim F. Rehan, Shobith Rangappa, and Hiroshi Hinou
- Subjects
0301 basic medicine ,Proteomics ,Glycosylation ,Epidemiology ,Ethnic group ,Glycobiology ,Physiology ,Biochemistry ,chemistry.chemical_compound ,0302 clinical medicine ,Neoplasms ,Medicine and Health Sciences ,Ethnicities ,Post-Translational Modification ,Chromatography, High Pressure Liquid ,Liquid Chromatography ,Multidisciplinary ,biology ,Organic Compounds ,Liver Diseases ,Monosaccharides ,Chromatographic Techniques ,Chemistry ,Oncology ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Physical Sciences ,Medicine ,Research Article ,Glycan ,Science ,Carbohydrates ,Gastroenterology and Hepatology ,Research and Analysis Methods ,Carcinomas ,Ethnic Epidemiology ,Glycomics ,03 medical and health sciences ,Polysaccharides ,Gastrointestinal Tumors ,medicine ,Biomarkers, Tumor ,Humans ,Glycoproteins ,Organic Chemistry ,Case-control study ,Chemical Compounds ,Cancer ,Biology and Life Sciences ,Proteins ,Cancers and Neoplasms ,Computational Biology ,Reproducibility of Results ,Hepatocellular Carcinoma ,medicine.disease ,High Performance Liquid Chromatography ,Sialic acid ,030104 developmental biology ,chemistry ,Case-Control Studies ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,People and Places ,biology.protein ,Sialic Acids ,Population Groupings ,Biomarkers - Abstract
BackgroundMost glycomics studies have focused on understanding disease mechanisms and proposing serum markers for various diseases, yet the influence of ethnic variation on the identified glyco-biomarker remains poorly addressed. This study aimed to investigate the inter-ethnic serum N-glycan variation among US origin control, Japanese, Indian, and Ethiopian healthy volunteers.MethodsHuman serum from 54 healthy subjects of various ethnicity and 11 Japanese hepatocellular carcinoma (HCC) patients were included in the study. We employed a comprehensive glycoblotting-assisted MALDI-TOF/MS-based quantitative analysis of serum N-glycome and fluorescence HPLC-based quantification of sialic acid species. Data representing serum N-glycan or sialic acid levels were compared among the ethnic groups using SPSS software.ResultsTotal of 51 N-glycans released from whole serum glycoproteins could be reproducibly quantified within which 33 glycoforms were detected in all ethnicities. The remaining N-glycans were detected weakly but exclusively either in the Ethiopians (13 glycans) or in all the other ethnic groups (5 glycans). Highest abundance (p < 0.001) of high mannose, core-fucosylated, hyperbranched/hypersialylated N-glycans was demonstrated in Ethiopians. In contrast, only one glycan (m/z 2118) significantly differed among all ethnicities being highest in Indians and lowest in Ethiopians. Glycan abundance trend in Ethiopians was generally close to that of Japanese HCC patients. Glycotyping analysis further revealed ethnic-based disparities mainly in the branched and sialylated structures. Surprisingly, some of the glycoforms greatly elevated in the Ethiopian subjects have been identified as serum biomarkers of various cancers. Sialic acid level was significantly increased primarily in Ethiopians, compared to the other ethnicities.ConclusionThe study revealed ethnic-specific differences in healthy human serum N-glycome with highest abundance of most glycoforms in the Ethiopian ethnicity. The results strongly emphasized the need to consider ethnicity matching for accurate glyco-biomarker identification. Further large-scale study employing various ethnic compositions is needed to verify the current result.
- Published
- 2018
43. Novel triazole containing zinc(II)phthalocyanine Schiff bases: Determination of photophysical and photochemical properties for photodynamic cancer therapy
- Author
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Kevser Harmandar, Gülçin Ekineker, Pelin Balcik-Ercin, Devrim Atilla, Ibrahim F. Sengul, Mehmet F. Saglam, and Meltem Göksel
- Subjects
Schiff base ,010405 organic chemistry ,Singlet oxygen ,medicine.medical_treatment ,Triazole ,Photodynamic therapy ,010402 general chemistry ,Photochemistry ,Condensation reaction ,01 natural sciences ,0104 chemical sciences ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Phthalocyanine ,medicine ,Photosensitizer ,Physical and Theoretical Chemistry ,Phototoxicity - Abstract
A simple and efficient synthesis of novel zinc(II) phthalocyanines bearing triazole moieties was described. The synthetic approach for preparation of the phthalocyanines 1 and 13 was achieved by Schiff base condensation reaction of phthalocyanine tetracarbaldehydes 3 and 12 with 4-amino-4H-1,2,4-triazole 5 in tetrahydrofuran in reasonable yields. The photophysical and photochemical properties of the compounds 1, 3, 12 and 13 were recorded only in DMSO. The singlet oxygen generation ability of the targeted phthalocyanine Schiff bases were investigated in an attempt to understand their potential for photodynamic therapy (PDT) activity. Moreover, in vitro PDT application was performed against the MCF-7 and MDA-MB-231 invasive breast carcinoma cell lines. Preliminary assay showed that the compounds 1 and 13 possessed the phototoxicity and cytotoxicity, with a maximum of 30% MCF-7 cells dead following light irradiation. It was also revealed that the targeted phthalocyanines possess promising characteristic as photosensitizer towards tumor cells.
- Published
- 2021
44. Naked-eye fluorescent sensor for Cu(II) based on indole conjugate BODIPY dye
- Author
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Metin Çetin, Süreyya Oğuz Tümay, Bünyemin Çoşut, Elif Okutan, Tugrul Doruk, Ibrahim F. Sengul, Hakan Kandemir, and Emrah Özcan
- Subjects
Indole test ,Quenching (fluorescence) ,010405 organic chemistry ,Chemistry ,010402 general chemistry ,Photochemistry ,Mass spectrometry ,01 natural sciences ,Fluorescence ,Fluorescence spectroscopy ,0104 chemical sciences ,Inorganic Chemistry ,chemistry.chemical_compound ,Materials Chemistry ,Knoevenagel condensation ,Naked eye ,Physical and Theoretical Chemistry ,BODIPY - Abstract
A novel on/off fluorescent indole/BODIPY-based Cu2+ chemosensor (3) was synthesized by Knoevenagel condensation of BODIPY derivative 1 with 2-methyl-indole-3-carbaldehyde 2. The identity of compound 3 was confirmed by 1H NMR, 13C NMR, FT-IR, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and single crystal X-ray diffraction techniques. Fluorescent chemosensor (3) is found to be highly selective and sensitive for detection of Cu2+ with a color change from purple to yellow. The optical sensor features for the Cu2+ complex of 3 were investigated by UV–Vis and fluorescence spectroscopy. The addition of Cu2+ caused quenching of fluorescence intensity and the detection limit was calculated to be 0.124 μM. Also, the stoichiometry ratio of 3+Cu2+ was obtained 2:1 by Job’s plot. Live cell image, flow cytometry and cytotoxic properties of compound 3 were examined.
- Published
- 2016
45. Novel carbazole containing zinc phthalocyanine photosensitizers: Synthesis, characterization, photophysicochemical properties and in vitro study
- Author
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Meltem Göksel, Hakan Kandemir, Ibrahim F. Sengul, and Mahmut Durmuş
- Subjects
biology ,010405 organic chemistry ,Carbazole ,Singlet oxygen ,chemistry.chemical_element ,General Chemistry ,Zinc ,010402 general chemistry ,biology.organism_classification ,Photochemistry ,01 natural sciences ,Combinatorial chemistry ,Fluorescence ,0104 chemical sciences ,Phthalonitrile ,chemistry.chemical_compound ,chemistry ,Phthalocyanine ,Tetra ,Photosensitizer - Abstract
Tetra and octa substituted novel zinc(II) phthalocyanines (3a and 5a) bearing carbazole groups were synthesized by cyclotetramerization of respective phthalonitrile derivatives (3 and 5). The zinc(II) phthalocyanines (3a and 5a) were converted into the water-soluble quaternized derivatives (3b and 5b) by utilizing dimethylsulphate as quaternizing agent. The synthesized novel compounds were confirmed thruogh FT-IR, UV-vis and MALDI-TOF mass spectroscopic data and elemental analysis as well. The photophysical (fluorescence quantum yields and lifetimes) and photochemical (singlet oxygen generation) properties of new phthalocyanines were determined in dimethylsulfoxide (DMSO). The photophysical and photochemical results were compared according to the number of the carbazole groups on the phthalocyanine core. Additionaly, in vitro photocytotoxicity of the targeted compounds were examined against to hepato cellular carcinoma (HuH-7) cancer cell line for determination of their photosensitizing ability.
- Published
- 2016
46. Synthesis of Novel Pyrrolo[3,2-c]carbazole and Dipyrrolo[3,2-c:2′,3′-g]carbazole Derivatives
- Author
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Ibrahim F. Sengul, Hakan Kandemir, and Erhan Astarci
- Subjects
010405 organic chemistry ,Stereochemistry ,Carbazole ,Organic Chemistry ,In vitro cytotoxicity ,Carbon-13 NMR ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,0104 chemical sciences ,Human colon cancer ,chemistry.chemical_compound ,chemistry ,Proton NMR ,Hemetsberger indole synthesis ,Single crystal - Abstract
Pyrrolocarbazole and dipyrrolocarbazoles have been synthesized via the Hemetsberger indole synthesis, starting from 9-ethyl carbazole-3-carbaldehyde and 9-ethylcarbazole-3,6-dicarbaldeyde, respectively. The pyrrolocarbazole structures were confirmed through 1 H NMR, 13 C NMR, IR, mass spectrometry and single crystal X-ray diffraction techniques. The targeted compounds showed potent in vitro cytotoxicity against human colon cancer HT29 cells.
- Published
- 2016
47. تاثير إضافة بعض مضادات الأكسدة الانزيمية وغير الانزيمية إلى مخفف Tris في قابلية التجميد لدى ثيران الهولشتاين بعد مدد مختلفة من الحفظ بالتجميد
- Author
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B. A. R A l-Timimi, O. H Al-Zaidi, W. Y Lateef, S. M. Eidan, and Ibrahim F. F
- Subjects
Tris ,chemistry.chemical_compound ,chemistry ,biology ,law ,Catalase ,Extender ,biology.protein ,Food science ,Glutathione ,Cryopreservation ,law.invention - Abstract
أجريت هذه الدراسة بهدف بيان تأثير إضافة بعض مضادات الأكسدة الانزيمية (الكاتليز) والكلوتاثيون المختزل وخليطهما إلى مخفف Trisفي قابلية التجميد لثيران الهولشتاين بعد الحفظ بالتجميد لمدد مختلفة. استعمل في هذه الدراسة سبعة ثيران هولشتاين بأعمار تتراوح بين 2.5–3 سنة. جمع السائل المنوي بوساطة المهبل الاصطناعي بواقع قذفة واحدة/ثور/اسبوع. جُمع السائل المنوي الطازج للثيران جميعها (Pooled semen) وقُسمَ بالتساوي على المعاملات المختلفة وبإستعمال مخفف Tris. عدت المعاملة الأولى كمجموعة سيطرة في حين أضيف انزيم الكاتليز للمعاملة الثانية والكلوتاثيون المختزل للمعاملة الثالثة بتركيز 100 وحدة دولية/مل و0.2 ملي مول/مل إلى مخفف Tris وعلى التوالي، فضلاً عن توليفتهما وللتراكيز نفسها المذكورة للمركبين للمعاملة الرابعة. أجريت دراسة تاثير هذه الإضافات في قابلية تجميد السائل المنوي خلال مدد حفظ زمنية مختلفة، تجميد بعد 48 ساعة وشهر وشهرين وثلاثة اشهر. أظهرت النتائج أنّ إضافة انزيم الكاتليز إلى مخفف Tris في المعاملة الثانية أدت إلى زيادة معنوية عند مستوى (P
- Published
- 2015
48. Carbazole substituted BODIPY dyes: Synthesis, photophysical properties and antitumor activity
- Author
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Ibrahim F. Sengul, Elif Okutan, Hakan Kandemir, Bünyemin Çoşut, and Erhan Astarci
- Subjects
chemistry.chemical_compound ,Chemistry ,Carbazole ,Process Chemistry and Technology ,General Chemical Engineering ,Desorption ,Biological activity ,Absorption (chemistry) ,BODIPY ,Photochemistry ,Mass spectrometry ,Fluorescence ,Dichloromethane - Abstract
In this study, two different BODIPYs containing carbazole groups at the mesa position were designed and synthesized. All compounds were fully characterized by elemental analysis, FT-IR, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, H-1 and C-13 NMR spectroscopy. The photophysical properties of the new compounds were investigated by means of absorption and fluorescence spectroscopies in dilute dichloromethane solutions. We were also interested in the biological activity of these two novel carbazole-linked BODIPYs, particularly concerning their ability to inhibit human colon cancer HT29 cell lines. The photophysical studies revealed strong donor acceptor interaction between carbazole and BODIPY and follow the order compound 5 > compound 4. Also, preliminary assay showed that compound 5 possessed higher cytotoxic activity than compound 4, with IC50 values of 8.3 ng/mL and 21.7 ng/mL respectively. (C) 2015 Elsevier Ltd. All rights reserved.
- Published
- 2015
49. Synthesis, characterization, UV–Vis absorption and cholinesterase inhibition properties of bis-indolyl imine ligand systems
- Author
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Mehmet F. Saglam, Mehmet Boga, Hakan Kandemir, Elif Şenkuytu, Ibrahim F. Sengul, Yunus Zorlu, and Murat Bingul
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Indole test ,Schiff base ,Absorption spectroscopy ,010405 organic chemistry ,Ligand ,Organic Chemistry ,Imine ,010402 general chemistry ,01 natural sciences ,Acetylcholinesterase ,Medicinal chemistry ,0104 chemical sciences ,Analytical Chemistry ,Inorganic Chemistry ,chemistry.chemical_compound ,Ultraviolet visible spectroscopy ,chemistry ,Spectroscopy ,Butyrylcholinesterase - Abstract
A number of bis-indolyl imine helical structures has successfully been synthesized employing Schiff base reaction conditions starting from 4,6-dimethoxy-2,3-diphenylindole with different o-phenyl diamines as π-spacer bridged. The structures of targeted compounds were identified by FT-IR, mass, 1H and 13C NMR spectroscopy along with single crystal X-ray diffraction techniques. The ground state absorption properties of the bis-indolyl compounds were also investigated utilizing UV–Vis absorption spectroscopy. As the biological aspect of the synthesized compounds, the anticholinesterase potency was investigated towards the acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. The highest inhibition was determined in the presence of compound 9 with the values of 89.21 and 96.06, better than standard Galantamine, for AChE and BChE, respectively.
- Published
- 2020
50. Azaindole-BODIPYs: Synthesis, fluorescent recognition of hydrogen sulfate anion and biological evaluation
- Author
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Burcu Topaloğlu, Emrah Özcan, Hakan Kandemir, Gürkan Keşan, Ibrahim F. Sengul, Bünyemin Çoşut, Elif Şenkuytu, Hasan Hüseyin Kazan, and Esra Tanrıverdi Eçik
- Subjects
Anions ,Boron Compounds ,Indoles ,Cell Survival ,Static Electricity ,Molecular Conformation ,02 engineering and technology ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Inhibitory Concentration 50 ,Desorption ,Humans ,Spectroscopy ,Acetonitrile ,Instrumentation ,Carbon-13 NMR ,Sulfuric Acids ,021001 nanoscience & nanotechnology ,Fluorescence ,Combinatorial chemistry ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Spectrometry, Fluorescence ,chemistry ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Calibration ,BODIPY ,0210 nano-technology ,K562 Cells ,Stoichiometry - Abstract
The synthesized and sensing capability of two novel azaindole substituted mono and distyryl BODIPY dyes against bisulfate anion were reported. Structural characterizations of the targeted compounds were conducted by using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, 1H and 13C NMR spectroscopies. Photophysical properties of the azaindole substituted BODIPY compounds were investigated employing absorption and fluorescence spectroscopies in acetonitrile solution. It was found that the final compounds 3 and 4 exhibited exclusively selective and sensitive turn-off sensor behavior on HSO4- anion. Additionally, the stoichiometry ratio of the targeted compounds to bisulfate anion was measured 0.5 by Job's method. Also, density function theory was performed to the optical response of the sensor for targeted compounds. Furthermore, the cytotoxicity of Azaindole-BODIPYs was examined against living human leukemia K562 cell lines.
- Published
- 2018
Catalog
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