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The use of chemical fertilizer along with organic fertilizer is an important agricultural practice that improves crop yield but also affects soil biogeochemical cycles. In this study, a maize field experiment was conducted to investigate the effects of NPK fertilizer (NPK), organic fertilizer (OF), and their combination (NPK+OF) on soil chemical properties, bacterial and fungal community structures, and diversity compared the control (CK, without any fertilizer). The results showed that the application of OF and NPK-combined OF increased soil organic matter (OM), total N, total P, available N, available P, and available K levels. For alpha diversity analyses, the application of fertilizers led to decreases in soil bacterial and fungal Shannon indices (except for NPK in fungi). Compared with CK, NPK, OF, and NPK+OF fertilization treatments significantly increased the abundances of Acidobacteriota, Gemmatimonadota, and Basidiomycota. Network analysis showed that fertilization produced fewer connections among microbial taxa, especially in the combination of NPK and OF. A redundancy analysis combined with Mantel test further found that the soil OM, available N and P were the main soil-fertility factors driving microbial community variations. Therefore, using organic fertilizer or biological fertilizer combined with chemical fertilizer to improve the status of soil C, N, and P is a promising method to maintain the balance of soil microorganisms in maize field. [ABSTRACT FROM AUTHOR]