1. CoGe LoadExp+: A web-based suite that integrates next-gen sequencing data analysis workflows and visualization
- Author
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Grover, Jeffrey W., Bomhoff, Matthew, Davey, Sean, Gregory, Brian D., Mosher, Rebecca A., and Lyons, Eric
- Subjects
Comparative genomics ,Genetics ,0303 health sciences ,business.industry ,Data management ,Suite ,Genomics ,Biology ,Data science ,Visualization ,03 medical and health sciences ,Identification (information) ,0302 clinical medicine ,Workflow ,Web application ,business ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
To make genomic and epigenomic analyses more widely available to the biological research community, we have created LoadExp+, a suite of bioinformatics workflows integrated with the web-based comparative genomics platform, CoGe. LoadExp+ allows users to perform transcriptomic (RNA-seq), epigenomic (bisulfite-seq), chromatin-binding (ChIP-seq), variant identification (SNPs), and population genetics analyses against any genome in CoGe, including genomes integrated by users themselves. Through LoadExp+’s integration with CoGe’s existing features, all analyses are available for visualization and additional downstream processing, and are available for export to CyVerse’s data management and analysis platforms. LoadExp+ provides easy-to-use functionality to manage genomics and epigenomics data throughout its entire lifecycle and facilitates greater accessibility of genomics analyses to researchers of all skill levels. LoadExp+ can be accessed at https://genomevolution.org.
- Published
- 2017
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