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It is found from actual data that due to generation dispatch and uncertain renewable generations and loads with complicated correlations, inferring the probabilistic distributions for uncertain inputs is challenging. Many probabilistic power flow approaches have been developed in the literature but their validations using realistic systems and data are lacking. This paper proposes a data-driven probabilistic analysis approach for system risk assessment of the miniWECC system using actual data. The sparse Gaussian process (SGP) is advocated to quantify the impacts of uncertain inputs on voltage security. SGP does not need the probability distribution function of uncertain inputs, can handle correlations and is highly computationally efficient. Results on the miniWECC system using realistic data show that SGP outperforms existing approaches and is able to quantify the voltage violation risks. [ABSTRACT FROM AUTHOR]