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We study the local disorder in the deformation of amorphous materials by decomposing the particle displacements into a continuous, inhomogeneous field and the corresponding fluctuations. We compare these fields to the commonly used non-affine displacements in an elastically deformed 2D Lennard-Jones glass. Unlike the non-affine field, the fluctuations are very localized, and exhibit a much smaller (and system size independent) correlation length, on the order of a particle diameter, supporting the applicability of the notion of local "defects" to such materials. We propose a scalar "noise" field to characterize the fluctuations, as an additional field for extended continuum models, e.g., to describe the localized irreversible events observed during plastic deformation., Comment: Minor corrections to match the published version

By applying local primitive path and Rouse modes analysis we study the chains conformations, local dynamics and viscosity of a model polymer melt in a polymer-wall interface. We establish that the presence of a repulsive wall leads to acceleration of the dynamics both for unentangled and weakly entangled melts and to a depletion in the entanglement density in the wall vicinity. When the surface bears some grafted chains, we show that the melt chains are accelerated in the unentangled regime and slowed down in the entangled regime. By analyzing the primitive paths we attribute the observed slowdown to an increase in the entanglement density in the interfacial layer. The presence of a relatively small density of grafting sites thus leads to improved mechanical properties (reinforcement) and decreases locally the entanglement length even if the surface is repulsive.

Lecture Notes for the Erice Summer School 2005 Computer Simulations in Condensed Matter: from Materials to Chemical Biology. Perspectives in celebration of the 65th Birthday of Mike Klein organized by Kurt Binder, Giovanni Ciccotti and Mauro Ferrario

The concept of effective temperatures in nonequilibrium systems is studied within an exactly solvable model of non-Markovian diffusion. The system is coupled to two heat baths which are kept at different temperatures: one ('fast') bath associated with an uncorrelated Gaussian noise and a second ('slow') bath with an exponential memory kernel. Various definitions of effective temperatures proposed in the literature are evaluated and compared. The range of validity of these definitions is discussed. It is shown in particular, that the effective temperature defined from the fluctuation-dissipation relation mirrors the temperature of the slow bath in parameter regions corresponding to a separation of time scales. On the contrary, quasi-static and thermodynamic definitions of an effective temperature are found to display the temperature of the fast bath in most parameter regions.

Extending recent numerical studies on two dimensional amorphous bodies, we characterize the approach of elastic continuum limit in three dimensional (weakly polydisperse) Lennard-Jones systems. While performing a systematic finite-size analysis (for two different quench protocols) we investigate the non-affine displacement field under external strain, the linear response to an external delta force and the low-frequency harmonic eigenmodes and their density distribution. Qualitatively similar behavior is found as in two dimensions. We demonstrate that the classical elasticity description breaks down below an intermediate length scale $\xi$, which in our system is approximately 23 molecular sizes. This length characterizes the correlations of the non-affine displacement field, the self-averaging of external noise with distance from the source and gives the lower wave length bound for the applicability of the classical eigenfrequency calculations. We trace back the "Boson-peak" of the density of eigenfrequencies (obtained from the velocity auto-correlation function) to the inhomogeneities on wave lengths smaller than $\xi$., Comment: 27 pages, 11 figures, submitted to Phys. Rev. B

The linear response of two-dimensional amorphous elastic bodies to an external delta force is determined in analogy with recent experiments on granular aggregates. For the generated forces, stress and displacement fields, we find strong relative fluctuations of order one close to the source, which, however, average out readily to the classical predictions of isotropic continuum elasticity. The stress fluctuations decay (essentially) exponentially with distance from the source. Only beyond a surprisingly large distance, $b \approx 30$ interatomic distances, self-averaging dominates, and the quenched disorder becomes irrelevant for the response of an individual configuration. We argue that this self-averaging length $b$ sets also the lower wavelength bound for the applicability of classical eigenfrequency calculations.Particular attention is paid to the displacements of the source, allowing a direct measurement of the local rigidity. The algebraic correlations of these displacements demonstrate the existence of domains of slightly different rigidity without, however, revealing a characteristic length scale, at least not for the system sizes we are able to probe., Comment: 27 pages, 10 figures

The correlations in the motion of reptating polymers in their melt are investigated by means of kinetic Monte Carlo simulations of the three dimensional slithering snake version of the bond-fluctuation model. Surprisingly, the slithering snake dynamics becomes inconsistent with classical reptation predictions at high chain overlap (either chain length $N$ or volume fraction $\phi$) where the relaxation times increase much faster than expected. This is due to the anomalous curvilinear diffusion in a finite time window whose upper bound $\tau_+$ is set by the chain end density $\phi/N$. Density fluctuations created by passing chain ends allow a reference polymer to break out of the local cage of immobile obstacles created by neighboring chains. The dynamics of dense solutions of snakes at $t \ll \tau_+$ is identical to that of a benchmark system where all but one chain are frozen. We demonstrate that it is the slow creeping of a chain out of its correlation hole which causes the subdiffusive dynamical regime. Our results are in good qualitative agreement with the activated reptation scheme proposed recently by Semenov and Rubinstein [Eur. Phys. J. B, {\bf 1} (1998) 87]. Additionally, we briefly comment on the relevance of local relaxation pathways within a slithering snake scheme. Our preliminary results suggest that a judicious choice of the ratio of local to slithering snake moves is crucial to equilibrate a melt of long chains efficiently., Comment: 24 pages, 18 figures, submitted to EPJ E

The approach of the elastic continuum limit in small amorphous bodies formed by weakly polydisperse Lennard-Jones beads is investigated in a systematic finite-size study. We show that classical continuum elasticity breaks down when the wavelength of the sollicitation is smaller than a characteristic length of approximately 30 molecular sizes. Due to this surprisingly large effect ensembles containing up to N=40,000 particles have been required in two dimensions to yield a convincing match with the classical continuum predictions for the eigenfrequency spectrum of disk-shaped aggregates and periodic bulk systems. The existence of an effective length scale \xi is confirmed by the analysis of the (non-gaussian) noisy part of the low frequency vibrational eigenmodes. Moreover, we relate it to the {\em non-affine} part of the displacement fields under imposed elongation and shear. Similar correlations (vortices) are indeed observed on distances up to \xi~30 particle sizes., Comment: 28 pages, 13 figures, 3 tables

Structures involving solid particles of nanometric dimensions play an increasingly important role in material sciences. These structures are often characterized through the vibrational properties of their constituent particles, which can be probed by spectroscopic methods. Interpretation of such experimental data requires an extension of continuum elasticity theory down to increasingly small scales. Using numerical simulation and exact diagonalization for simple models, we show that continuum elasticity, applied to disordered system, actually breaks down below a length scale of typically 30 to 50 molecular sizes. This length scale is likely related to the one which is generally invoked to explain the peculiar vibrational properties of glassy systems., Comment: 4 pages, 5 figures, LATEX, Europhysics Letters accepted

We investigate by means of a number of different dynamical Monte Carlo simulation methods the self-assembly of equilibrium polymers in dilute, semidilute and concentrated solutions under good-solvent conditions. In our simulations, both linear chains and closed loops compete for the monomers, expanding on earlier work in which loop formation was disallowed. Our findings show that the conformational properties of the linear chains, as well as the shape of their size distribution function, are not altered by the formation of rings. Rings only seem to deplete material from the solution available to the linear chains. In agreement with scaling theory, the rings obey an algebraic size distribution, whereas the linear chains conform to a Schultz--Zimm type of distribution in dilute solution, and to an exponentional distribution in semidilute and concentrated solution. A diagram presenting different states of aggregation, including monomer-, ring- and chain-dominated regimes, is given.

The interplay of topological constraints, excluded volume interactions, persistence length and dynamical entanglement length in solutions and melts of linear chains and ring polymers is investigated by means of kinetic Monte Carlo simulations of a three dimensional lattice model. In unknotted and unconcatenated rings, topological constraints manifest themselves in the static properties above a typical length scale $dt \sim 1/\sqrt{l\phi}$ ($\phi$ being the volume fraction, $l$ the mean bond length). Although one might expect that the same topological length will play a role in the dynamics of entangled polymers, we show that this is not the case. Instead, a different intrinsic length de, which scales like excluded volume blob size $\xi$, governs the scaling of the dynamical properties of both linear chains and rings., Comment: 7 pages. 4 figures