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We report the crystal structures of four different neutral lanthanide (Ln = La, Nd, Eu and Gd) metal–organic frameworks based on the organic linker 2,6-naphthalenedicarboxylate (NDC). The materials are three-dimensional and crystallize in three distinct topologies, with distinct bonding modes of NDC and lanthanide coordination numbers ranging from seven to nine and varying geometry. We denote our materials SLUG-49 [La6(NDC)9(DMF)3·6 DMF], -50 [Nd2(NDC)3O(DMF)2], -51 [Eu2(NDC)3(DMF)2·DMF], and -52 [Gd4(NDC)6(DMF)4] (DMF = N,N-dimethylformamide). The structures exhibit similar thermal decomposition profiles and infrared spectra. The Eu(III)-based material exhibits a sharp red-orange luminescence at 613 nm with a quantum efficiency of 3.56%.

In order to address the loss of crystallographic training opportunities resulting from the cancelation of conventional schools around the world due to the COVID-19 pandemic, we have started an online crystallography school with live lectures and live Q&A using Zoom Webinar. Since we were trying to reach a large audience in a relatively short period, we have limited the school to ten 1 h lectures covering practical aspects of small molecule crystallography including data collection, data processing, and structure solution. In the school, we also covered some advanced topics that students commonly see in their work: absolute structure determination, twinning, and disorder. To round out the education, we provided lectures on macromolecular crystallography and powder diffraction. For students to practice on their own, we used freely available data reduction and structure solution software, as well as datasets with which to practice. To give students credit for course completion, we provided an online exam and an electronic certificate of completion. In this editorial, we will provide some insight into the issues of holding lectures with up to 750 students of very diverse backgrounds and review the efficacy of the school in teaching crystallography for the two cohorts of students.

Human UDP-α-d-xylose synthase (hUXS) is a member of the extended short chain dehydrogenase/reductase (SDR) family of enzymes. Previous crystallographic studies have shown that hUXS conserves the same dimeric quaternary structure observed in other SDR enzymes. Here, we present evidence that hUXS also forms a tetramer in solution that is important for activity. Sedimentation velocity studies show that two hUXS dimers undergo a concentration-dependent association to form a tetramer with a Kd of 2.9 μM. The tetrameric complex is also observed in small-angle X-ray scattering (SAXS). The specific activity for the production of the reaction intermediate UDP-α-d-4-keto-xylose displays a hyperbolic dependence on protein concentration that is well modeled by an isotherm using the 2.9 μM Kd of the tetramer. Likewise, the rate of UDP-α-d-xylose production in the presence of increasing concentrations of the small molecule crowder trimethylamine N-oxide is consistent with the formation of a higher activity tetramer. We present several possible structural models of the hUXS tetramer based on (i) hUXS crystal packing, (ii) homology modeling, or (iii) ab initio simulated annealing of dimers. We analyze the models in terms of packing quality and agreement with SAXS data. The higher activity of the tetramer coupled with the relative instability of the complex suggests that an association-dissociation mechanism may regulate hUXS activity.

Aromatic donors (D) spontaneously form a series of colored intermolecular charge-resonance (CR) complexes with their cation radicals (D+˙) as well as charge-transfer (CT) complexes with various π-acceptors (A). Spectroscopic changes during the formation of these CR and CT complexes are both included in a single Mulliken plot of ECR,CTversus E°ox − E°red. Precise X-ray crystallographic studies now reveal almost identical structural features of the CR and CT complexes, especially with a prototypical strong electron donor such as octamethylbiphenylene (OMB). Whereas most weaker donors do not show perceptible alterations of their molecular geometry during complex formation, OMB exhibits pronounced bond elongation/contraction of almost 2 pm both in its CT complexes with strong acceptors (TCNE and TCNQ) and in its CR complex (OMB2)+˙. In both cases, the structural changes lie midway between geometries of the neutral OMB donor and its fully oxidized cation radical OMB+˙. The CT and CR complexes of OMB in the solid state also show similar crystal packing features that maintain interplanar separations as short as 3.1–3.2 A with significant distortion (∼6°) from planar molecular geometry. Together with the similar values of KCR = 350 M−1 and KEDA = 440–490 M−1, we acknowledge the common nature of the CT and CR complexes through an orbital consideration (Chart 1) that recognizes the antibonding component in CR complex formation.

The spontaneous assembly of aromatic cation-radicals (D(+)(*)()) with the parent donor (D) to afford the paramagnetic dimer (D)(2)(+)(*)() is accompanied by a dramatic color change. For example, spectral (UV-vis and ESR) and X-ray crystal structure analyses establish the molecular association of octamethylbiphenylene cation-radical with its neutral counterpart to produce the mixed-valence or dimeric cation-radical in which the positive charge is completely delocalized over both aromatic moieties. The use of the sterically hindered cation-radicals confirms the new spectral or charge-resonance (CR) band to result in dimeric cation-radicals in which the intermolecular separation occurs at an optimum distance allowed by van der Waals contacts. The striking similarities between the classical donor/acceptor (EDA) complexes and the dimeric cation-radicals (D)(2)(+)(*)() (both in terms of the geometrical requirement as well as the appearance of new absorption bands) suggest that the latter can be considered as particular examples of Mulliken's charge-transfer complexes in which the positive charge is completely (equally) delocalized over both donor (D) and acceptor (D(+)(*)()).

Archaeoglobus fulgidus ferritin (AfFtn) is the only tetracosameric ferritin known to form a tetrahedral cage, a structure that remains unique in structural biology. As a result of the tetrahedral (2-3) symmetry, four openings (∼45 Å in diameter) are formed in the cage. This open tetrahedral assembly contradicts the paradigm of a typical ferritin cage: a closed assembly having octahedral (4-3-2) symmetry. To investigate the molecular mechanism affecting this atypical assembly, amino acid residues Lys-150 and Arg-151 were replaced by alanine. The data presented here shed light on the role that these residues play in shaping the unique structural features and biophysical properties of the AfFtn. The x-ray crystal structure of the K150A/R151A mutant, solved at 2.1 Å resolution, indicates that replacement of these key residues flips a "symmetry switch." The engineered molecule no longer assembles with tetrahedral symmetry but forms a typical closed octahedral ferritin cage. Small angle x-ray scattering reveals that the overall shape and size of AfFtn and AfFtn-AA in solution are consistent with those observed in their respective crystal structures. Iron binding and release kinetics of the AfFtn and AfFtn-AA were investigated to assess the contribution of cage openings to the kinetics of iron oxidation, mineralization, or reductive iron release. Identical iron binding kinetics for AfFtn and AfFtn-AA suggest that Fe(2+) ions do not utilize the triangular pores for access to the catalytic site. In contrast, relatively slow reductive iron release was observed for the closed AfFtn-AA, demonstrating involvement of the large pores in the pathway for iron release.

As crystallographers face increasing problems with crystallizing new proteins, in-situ screening in crystallization trays at room temperature is experiencing a renaissance. It saves a lot of time when screening large numbers of crystallization hits and it helps avoid crystal damage caused by human manipulation error (harsh manual handling, bad freezing) or changes in crystal properties (dehydration, wrong cryo-conditions). In certain cases, it is also possible to go beyond screening and collect enough data for structure solution, especially on an X-ray home source where a less intense beam helps minimize the devastations of radiation damage occurring at room temperature. The Rigaku PlateMate has proved itself as an efficient and easy-to-use in-situ screening tool on the field for the past two years. It is as easily mounted on a goniometer as a regular goniometer head and thanks to a plate adapter with SBS footprints, it accommodates most 96-wells plate types, from sitting and hanging drop to LCP plates. In addition, thanks to its narrow dimensions and aided by software to prevent collisions with the detector and the crystal viewing camera, the PlateMate can be used to easily collect data from crystals in situ. In this work, we present structure solution results obtained from data collected with the PlateMate on crystals from various proteins (native crystals or containing gold or iodine) and using one or multiple crystals to make up a complete data set.