1. Development of T m -shift genotyping method for detection of cat-derived Giardia lamblia.
- Author
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Pan W, Fu Y, Abdullahi AY, Wang M, Shi X, Yang F, Yu X, Yan X, Zhang P, Hang J, and Li G
- Subjects
- Animals, Cat Diseases parasitology, Cats, DNA Primers genetics, Genotype, Giardiasis parasitology, Humans, Real-Time Polymerase Chain Reaction, Cat Diseases diagnosis, Cytoskeletal Proteins genetics, DNA, Protozoan genetics, Genotyping Techniques methods, Giardia lamblia genetics, Giardiasis diagnosis, Polymorphism, Single Nucleotide genetics, Protozoan Proteins genetics
- Abstract
To develop T
m -shift genotyping method for detection of cat-derived Giardia lamblia, two sets of primers with two GC-rich tails of unequal length attached to their 5'-end were designed according to two SNPs (BG434 and BG170) of β-giardin (bg) gene, and specific PCR products were identified by inspection of a melting curve on real-time PCR thermocycler. A series of experiments on the stability, sensitivity, and accuracy of Tm -shift method was tested, and clinical samples were also detected. The results showed that two sets of primers based on SNP could distinguish accurately between assemblages A and F. Coefficient of variation of Tm values of assemblage A and F was 0.14 and 0.07% in BG434 and 0.10 and 0.11% in BG170, respectively. The lowest detection concentration was 4.52 × 10-5 and 4.88 × 10-5 ng/μL samples of assemblage A and F standard plasmids. The Tm -shift genotyping results of ten DNA samples from the cat-derived G. lamblia were consistent with their known genotypes. The detection rate of clinical samples by Tm -shift was higher than that by microscopy, and their genotyping results were in complete accordance with sequencing results. It is concluded that the Tm -shift genotyping method is rapid, specific, and sensitive and may provide a new technological mean for molecular detection and epidemiological investigation of the cat-derived G. lamblia.- Published
- 2017
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