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Intensive selection for improved productivity has been accompanied by an increase in inbreeding rates and a reduction in genetic diversity. The increase in inbreeding tends to impact performance, especially fitness-related traits such as male fertility. Inbreeding can be monitored using runs of homozygosity (ROH), defined as contiguous lengths of homozygous genotypes observed in an individual's chromosome. The goal of this study was to evaluate the presence of ROH in Italian Brown Swiss cattle and assess its association with bull fertility. First, we evaluated the association between ROH and male fertility using 1,102 Italian Brown Swiss bulls with sire conception rate records and 572 K SNPs spanning the entire genome. Second, we split the entire population into 100 high-fertility and 100 low-fertility bulls to investigate the potential enrichment of ROH segments in the low-fertility group. Finally, we mapped the significant ROH regions to the bovine genome to identify candidate genes associated with sperm biology and male fertility. Notably, there was a negative association between bull fertility and the amount of homozygosity. Four different ROH regions located in chromosomes 6, 10, 11, and 24 were significantly overrepresented in low-fertility bulls (Fisher's exact test, p-value <0.01). Remarkably, these four genomic regions harbor many genes such as WDR19, RPL9, LIAS, UBE2K, DPF3, 5S-rRNA, 7SK, U6, and WDR7 that are related to sperm biology and male fertility. Overall, our findings suggest that inbreeding and increased homozygosity have a negative impact on male fertility in Italian Brown Swiss cattle. The quantification of ROH can contribute to minimizing the inbreeding rate and avoid its negative effect on fitness-related traits, such as male fertility. [ABSTRACT FROM AUTHOR]

High-producing dairy cows face various challenges during their productive life, including metabolic and infectious diseases, heat stress, and intensive management practices. Therefore, dairy cattle breeding programs have begun to focus on novel traits related to the overall resilience of the cows. Resilience has been defined as the ability of an animal to be minimally affected or to recover quickly from environmental disturbances while maintaining a certain level of productivity. In dairy cattle, resilience can be evaluated using measurements of longitudinal indicator traits, such as activity level, which are repeatedly measured throughout the lifetime of the animal. Variability in activity (defined in this study as average steps per hour and daily steps taken) might be a key indicator of resilience, due to activity of contemporary group animals deviating from normal behavior in less resilient cattle. Before resilience indicators are defined based on variability in certain longitudinal traits, there is a need for evaluating the genetic background of the source variable. Therefore, the primary objective of this study was to estimate variance components and genetic parameters of activity traits in lactating Holstein cows. The data was collected from a large dairy farm located in Indiana, using milking systems. Records from 6,332 Holstein cows for the traits of average activity per hour and number of daily steps were used in the analyses. The models used for the estimation of variance components included the significant (P < 0.05) fixed effects of contemporary group defined based on the concatenation of calving year and season, parity number (1, 2, 3+), pregnancy group (0 mo, 1-3 mo, 4-6 mo, and 7-9 mo), and days in milk (2-wkclasses), and the random effects of direct additive genetic, permanent environment, and residual effects. Genetic parameters were estimated for average activity per hour and daily steps for all parities together. Heritability estimates were calculated based on single-trait repeatability models and the (AI) REML method implemented in the BLUPF90+ software. Daily steps taken had a heritability (± SE) of 0.05 (± 0.02) and a repeatability of 0.29 (± 0.02). Activity per hour had a heritability estimate of 0.12 (± 0.04) and a repeatability of 0.57 (± 0.01). These results indicate that activity level is heritable in North American Holstein cattle and can be added to selection indexes if proven to be a key auxiliary trait for improving dairy cattle sustainability. As a next step, we will investigate the genetic relationship of activity traits with other relevant traits and derive resilience indicators based on variability in activity level. [ABSTRACT FROM AUTHOR]

Improving reproductive performance remains a major goal in dairy cattle worldwide. Service sire has been recognized as an important factor affecting herd fertility. The main objective of this study was to reveal the genetic basis of male fertility in Italian Brown Swiss dairy cattle. Dataset included 1102 Italian Brown Swiss bulls with sire conception rate records genotyped with 454k single nucleotide polymorphisms. The analysis included whole-genome scans and gene-set analyses to identify genomic regions, individual genes and genetic mechanisms affecting Brown Swiss bull fertility. One genomic region on BTA1 showed significant additive effects. This region harbors gene RABL3 which is implicated cell proliferation and motility. Two genomic regions, located on BTA6 and BTA26, showed marked non-additive effects. These regions harbor genes, such as WDR19 and ADGRA1, that are directly involved in male fertility, including sperm motility, acrosome reaction, and embryonic development. The gene-set analysis revealed functional terms related to cell adhesion, cellular signaling, cellular transport, immune system, and embryonic development. Remarkably, a gene-set analysis also including Holstein and Jersey data, revealed significant processes that are common to the three dairy breeds, including cell migration, cell–cell interaction, GTPase activity, and the immune function. Overall, this comprehensive study contributes to a better understanding of the genetic basis of male fertility in cattle. In addition, our findings may guide the development of novel genomic strategies for improving service sire fertility in Brown Swiss cattle. [ABSTRACT FROM AUTHOR]

The objective of this study was to investigate the effects of rumen-protected methionine (RPM) supplementation during early lactation on performance and metabolic parameters of dairy cows. Forty-two Holstein cows were blocked by parity (22 primiparous and 20 multiparous) and calving date, then randomly assigned to two groups, Control and RPM. From calving through 29 ± 8 d in milk, cows received an early lactation diet [1.59 Mcal/kg of DM, 10.7% rumen-degradable protein and 6.5% rumen-undegradable protein] with no added methionine (Control, n = 21) or with supplementation of Smartamine M (RPM, Adisseo Inc, n = 21). RPM cows were supplemented with 12 g/day Smartamine M (7.2 g of metabolizable methionine), individually top-dressed over the total mixed ration. Blood and milk samples were collected during the first two weeks of lactation and milk yield recorded until 30 days in milk. No differences in milk yield or blood metabolites were observed. Cows supplemented with RPM increased milk fat and total solids contents and fat-to-protein ratio by 0.48% units, 0.66% units, and 0.09 units, while tended to increase milk total protein content by 0.13% units, respectively. This study showed beneficial effects of early postpartum RPM supplementation on milk composition of dairy cows. [ABSTRACT FROM AUTHOR]

Dairy bull fertility is traditionally evaluated using semen production and quality traits; however, these attributes explain only part of the differences observed in fertility among bulls. Alternatively, bull fertility can be directly evaluated using cow field data. The main objective of this study was to investigate bull fertility in the Italian Brown Swiss dairy cattle population using confirmed pregnancy records. The data set included a total of 397,926 breeding records from 1,228 bulls and 129,858 lactating cows between first and fifth lactation from 2000 to 2019. We first evaluated cow pregnancy success, including factors related to the bull under evaluation, such as bull age, bull inbreeding, and AI organization, and factors associated with the cow that receives the dose of semen, including herd-year-season, cow age, parity, and milk yield. We then estimated sire conception rate using only factors related to the bull. Model predictive ability was evaluated using 10-fold cross-validation with 10 replicates. Interestingly, our analyses revealed that there is a substantial variation in conception rate among Brown Swiss bulls, with more than 20% conception rate difference between high-fertility and low-fertility bulls. We also showed that the prediction of bull fertility is feasible as our cross-validation analyses achieved predictive correlations equal to 0.30 for sire conception rate. Improving reproduction performance is one of the major challenges of the dairy industry worldwide, and for this, it is essential to have accurate predictions of service sire fertility. This study represents the foundation for the development of novel tools that will allow dairy producers, breeders, and artificial insemination companies to make enhanced management and selection decisions on Brown Swiss male fertility. [ABSTRACT FROM AUTHOR]