860 results on '"serotypes"'
Search Results
2. Analysis of the interrelationship between precipitation and confirmed dengue cases in the city of Recife (Brazil) covering climate and public health information.
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Borges IVG, Musah A, Dutra LMM, Tunali M, Lima CL, Tunali MM, da Silva ACG, Aldosery A, Moreno GMM, Dos Santos WP, Massoni T, Yenigün O, Kostkova P, da Rocha RP, Campos LC, and Ambrizzi T
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- Brazil epidemiology, Humans, Animals, Public Health, Incidence, Cities epidemiology, Disease Outbreaks statistics & numerical data, Seasons, Dengue epidemiology, Rain, Aedes virology, Climate, Mosquito Vectors
- Abstract
Large-scale epidemics of arboviruses, such as dengue, have heightened societal awareness regarding the necessity of combating the primary transmission vectors. Equally critical is the identification of environmental conditions and variables that influence vector population dynamics. Aedes aegypti , the primary vector of arboviruses such as dengue and Zika in Brazil, is closely associated with the climatic and geographical conditions of urban environments. This study examines the relationship between precipitation and confirmed dengue cases in Recife (Brazil), employing regression and quantile analyses to evaluate the influence of meteorological conditions on the disease's spread. The findings reveal a direct correlation between monthly averages of precipitation and confirmed cases, although this is apparent only when excluding years of epidemic peaks. The highest number of cases generally aligns with the rainy season, and the lowest with the dry season, with weak, moderate and strong precipitation events being closely linked to increased dengue incidence. However, notable discrepancies were identified: four out of six major outbreaks occurred in drier months, challenging the assumption of a straightforward relationship between rainfall and dengue incidence. These findings underscore the multifaceted nature of dengue dynamics, suggesting that while precipitation plays a significant role, other factors, including serotype circulation and broader climatic phenomena, are equally critical in driving outbreaks. This complexity highlights the need for a more comprehensive understanding of the mechanisms influencing dengue epidemics., Competing Interests: The authors have no relevant financial conflicts of interest. However, it should be noted that Tiago Massoni, Patty Kostkova, Tercio Ambrizzi, and Anwar Musah are members of the Editorial Board of Vector-Borne Diseases -- The Digital One Health Approach. Due to this affiliation, the manuscript has been managed by other editorial members. These author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Borges, Musah, Dutra, Tunali, Lima, Tunali, da Silva, Aldosery, Moreno, dos Santos, Massoni, Yenigün, Kostkova, da Rocha, Campos and Ambrizzi.)
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- 2024
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3. Distinct inflammatory markers in primary and secondary dengue infection: can cytokines CXCL5, CXCL9, and CCL17 act as surrogate markers?
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Mustafa Z, Manzoor Khan H, Ghazanfar Ali S, Sami H, Almatroudi A, Alam Khan M, Khan A, Al-Megrin WAI, Allemailem KS, Ahmad I, El-Kady A, Suliman Al-Muzaini M, Azam Khan M, and Azam M
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- Humans, Male, Adult, Female, India epidemiology, Young Adult, Adolescent, Middle Aged, Dengue Virus immunology, Enzyme-Linked Immunosorbent Assay, Child, Real-Time Polymerase Chain Reaction, Biomarkers blood, Dengue diagnosis, Dengue immunology, Dengue blood, Chemokine CXCL5 blood, Chemokine CCL17 blood, Chemokine CXCL9 blood
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Dengue fever poses a significant global health threat, with symptoms including dengue hemorrhagic fever and dengue shock syndrome. Each year, India experiences fatal dengue outbreaks with severe manifestations. The primary cause of severe inflammatory responses in dengue is a cytokine storm. Individuals with a secondary dengue infection of a different serotype face an increased risk of complications due to antibody-dependent enhancement. Therefore, it is crucial to identify potential risk factors and biomarkers for effective disease management. In the current study, we assessed the prevalence of dengue infection in and around Aligarh, India, and explored the role of cytokines, including CXCL5, CXCL9, and CCL17, in primary and secondary dengue infections, correlating them with various clinical indices. Among 1,500 suspected cases, 367 tested positive for dengue using Real-Time PCR and ELISA. In secondary dengue infections, the serum levels of CXCL5, CXCL9, and CCL17 were significantly higher than in primary infections (P < 0.05). Dengue virus (DENV)-2 showed the highest concentrations of CXCL5 and CCL17, whereas DENV-1 showed the highest concentrations of CXCL9. Early detection of these cytokines could serve as potential biomarkers for diagnosing severe dengue, and downregulation of these cytokines may prove beneficial for the treatment of severe dengue infections.
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- 2024
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4. Molecular surveillance for dengue serotypes among the population living in Moyen-Ogooué province, Gabon; evidence of the presence of dengue serotype 1.
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Bikangui R, Parkouda S, More A, Magossou Mbadinga MV, Boussoukou IPM, Ondo GN, Nkoma AMM, Adamou R, Honkpehedji YJ, Rossatanga EG, Ushijima Y, Abe H, Lell B, Dejon-Agobé JC, Yasuda J, and Adegnika AA
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- Humans, Gabon epidemiology, Female, Male, Cross-Sectional Studies, Adult, Young Adult, Adolescent, Child, Preschool, Child, Middle Aged, Infant, Chikungunya Fever epidemiology, Chikungunya Fever virology, Aged, Prevalence, Chikungunya virus genetics, Chikungunya virus classification, Chikungunya virus isolation & purification, Dengue Virus genetics, Dengue Virus classification, Dengue Virus isolation & purification, Dengue epidemiology, Dengue virology, Serogroup
- Abstract
Background: Despite dengue virus (DENV) outbreak in Gabon a decade ago, less is known on the potential circulation of DENV serotypes in the country. Previous studies conducted in some areas of the country, are limited to hospital-based surveys which reported the presence of some cases of serotype 2 and 3 seven years ago and more recently the serotype 1. As further investigation, we extend the survey to the community of Moyen Ogooué region with the aim to assess the presence of the dengue virus serotypes, additionally to characterize chikungunya (CHIKV) infection and describe the symptomatology associated with infections., Method: A cross-sectional survey was conducted from April 2020 to March 2021. The study included participants of both sexes and any age one year and above, with fever or history of fever in the past seven days until blood collection. Eligible volunteers were clinically examined, and blood sample was collected for the detection of DENV and CHIKV using RT-qPCR. Positive samples were selected for the target sequencing., Results: A total of 579 volunteers were included. Their mean age (SD) was 20 (20) years with 55% of them being female. Four cases of DENV infection were diagnosed giving a prevalence of 0.7% (95%CI: 0.2-1.8) in our cohort while no case of CHIKV was detected. The common symptoms and signs presented by the DENV cases included fatigue, arthralgia myalgia, cough, and loss of appetite. DENV-1was the only virus detected by RT-qPCR., Conclusion: Our results confirm the presence of active dengue infection in the region, particularly DENV-1, and could suggest the decline of DENV-2 and DENV-3. Continuous surveillance remains paramount to comprehensively describe the extent of dengue serotypes distribution in the Moyen-Ogooué region of Gabon., (© 2024. The Author(s).)
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- 2024
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5. Introduction of New Dengue Virus Lineages of Multiple Serotypes after COVID-19 Pandemic, Nicaragua, 2022.
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Cerpas C, Vásquez G, Moreira H, Juarez JG, Coloma J, Harris E, Bennett SN, and Balmaseda Á
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- Nicaragua epidemiology, Humans, Pandemics, Dengue Virus genetics, Dengue Virus classification, Dengue epidemiology, Dengue virology, COVID-19 epidemiology, COVID-19 virology, Serogroup, SARS-CoV-2 genetics, Phylogeny
- Abstract
Major dengue epidemics throughout Nicaragua's history have been dominated by 1 of 4 dengue virus serotypes (DENV-1-4). To examine serotypes during the dengue epidemic in Nicaragua in 2022, we performed real-time genomic surveillance in-country and documented cocirculation of all 4 serotypes. We observed a shift toward co-dominance of DENV-1 and DENV-4 over previously dominant DENV-2. By analyzing 135 new full-length DENV sequences, we found that introductions underlay the resurgence: DENV-1 clustered with viruses from Ecuador in 2014 rather than those previously seen in Nicaragua; DENV-3, which last circulated locally in 2014, grouped instead with Southeast Asia strains expanding into Florida and Cuba in 2022; and new DENV-4 strains clustered within a South America lineage spreading to Florida in 2022. In contrast, DENV-2 persisted from the formerly dominant Nicaragua clade. We posit that the resurgence emerged from travel after the COVID-19 pandemic and that the resultant intensifying hyperendemicity could affect future dengue immunity and severity.
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- 2024
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6. Novel mutations in structural proteins of dengue virus genomes.
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Mushtaq S, Khan MIU, Khan MT, Lodhi MS, and Wei DQ
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- Humans, Antibodies, Viral, Mutation, Genome, Viral, Dengue Virus genetics, Dengue epidemiology
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Background: Genomic characterization of the dengue virus (DENV) is useful for understanding its molecular evolution, transmission, pathogenicity and infectivity. The DENV genomic RNA encodes three structural proteins, capsid (C) envelope (E) and membrane (M) proteins mediating viral entry and assembly during host infection. The current study aims to explore the DENV serotypes and mutations in the E and M proteins., Methods: Twenty-three samples of DENV-positive patients were processed and selected for whole genome sequencing (WGS) from the Punjab Province of Pakistan., Results: Among the 23 WGS, 19 samples showed numerous mutations (BioProject ID PRJNA943555). DENV1 and DENV2 are the most prevalent serotypes. A total of 179 mutations were detected in the E protein, in which K203E, T88A, I114L, and I293T are novel. The I270L, T272A, S273L, and T277A were found in the "kl" β-hairpin (aa 270-279). The M protein harbors 74 mutations, of which 24 were novel. Three prominent complementary regions in the prM and E protein complex formations include R6, E46, D47, D63, and D65 on 'pr' peptide, and E84, K64, and H244, K247 on E, remain conserved except R6C. To our knowledge, it is the first comprehensive study of mutations in structural proteins., Conclusion: Genomic epidemiology is critical for analyzing emerging mutations and designing new policies therapeutic efforts for future outbreaks., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2023
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7. Molecular evolution of dengue virus: a Bayesian approach using 1581 whole-genome sequences from January 1944 to July 2022.
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Wolf J, de Souza AP, Schardosim RFC, Pille A, Maccari JG, Mutlaq MP, and Nasi LA
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- Animals, Humans, Bayes Theorem, Brazil, Evolution, Molecular, Phylogeny, Dengue, Dengue Virus genetics
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Dengue is a viral disease transmitted by mosquitoes that has spread rapidly across all continents in recent years. There are four distinct but closely related serotypes of the virus that causes dengue (DENV-1, DENV-2, DENV-3, and DENV-4). In the present study, we evaluated temporal spreading and molecular evolution of dengue virus (DENV) serotypes. Bayesian coalescent analysis was performed to study viral evolution, and it was estimated that the most recent common ancestor of DENV-1 was present in 1884 in Southeast Asia, that of DENV-2 was present in 1723 in Europe, that of DENV-3 was present in 1921 in Southeast Asia, and that of DENV-4 was present in 1876 in Southeast Asia. DENV appears to have originated in Spain in approximately 1682, and it was disseminated in Asia and Oceania in approximately 1847. After this period, the virus was introduced into North America in approximately 1890. In South America, it was first disseminated to Ecuador in approximately 1897 and then to Brazil in approximately 1910. Dengue has had a significant impact on global health worldwide, and the present study provides an overview of the molecular evolution of DENV serotypes., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.)
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- 2023
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8. Genetic Analysis of Dengue Virus in Severe and Non-Severe Cases in Dhaka, Bangladesh, in 2018-2022.
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Rahim R, Hasan A, Phadungsombat J, Hasan N, Ara N, Biswas SM, Nakayama EE, Rahman M, and Shioda T
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- Humans, Phylogeny, Bangladesh epidemiology, Serogroup, Genotype, Dengue Virus genetics, Dengue epidemiology
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Dengue virus (DENV) infections have unpredictable clinical outcomes, ranging from asymptomatic or minor febrile illness to severe and fatal disease. The severity of dengue infection is at least partly related to the replacement of circulating DENV serotypes and/or genotypes. To describe clinical profiles of patients and the viral sequence diversity corresponding to non-severe and severe cases, we collected patient samples from 2018 to 2022 at Evercare Hospital Dhaka, Bangladesh. Serotyping of 495 cases and sequencing of 179 cases showed that the dominant serotype of DENV shifted from DENV2 in 2017 and 2018 to DENV3 in 2019. DENV3 persisted as the only representative serotype until 2022. Co-circulation of clades B and C of the DENV2 cosmopolitan genotype in 2017 was replaced by circulation of clade C alone in 2018 with all clones disappearing thereafter. DENV3 genotype I was first detected in 2017 and was the only genotype in circulation until 2022. We observed a high incidence of severe cases in 2019 when the DENV3 genotype I became the only virus in circulation. Phylogenetic analysis revealed clusters of severe cases in several different subclades of DENV3 genotype I. Thus, these serotype and genotype changes in DENV may explain the large dengue outbreaks and increased severity of the disease in 2019.
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- 2023
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9. Genomic characterization and evolutionary analysis of dengue virus from Aedes mosquitoes in Telangana, India.
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Sankoju P, Ravinuthala VSU, Mopuri R, Mutheneni SR, and Addlagatta A
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- Animals, Phylogeny, Mosquito Vectors, India epidemiology, Genomics, Dengue Virus, Dengue, Aedes
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Background & Objectives: Entomological surveillance for mosquito-borne viruses is vital for monitoring disease transmission and vector control programs. The vector control program is reliant not only on vector density but also on the timely detection of mosquito-borne infections. In the present study, we conducted an entomological surveillance in different locations of Hyderabad, Telangana, India during 2017-2018 and the collected mosquitoes were screened for dengue virus., Methods: Reverse transcriptase polymerase chain reaction (RT-PCR) was used for the identification and serotyping of the dengue virus. Bioinformatics analysis was performed using Mega 6.0 software. Followed by phylogenetic analysis, which was based on CprM structural genome sequence, was performed by using the Maximum-Likelihood method., Results: The TaqMan RT-PCR assay was used to analyze the serotypes of 25 pools of Aedes mosquitoes and found that all four serotypes are circulating in Telangana. DENV1 (50%) was the most commonly detected serotype followed by DENV2 (16.6%), DENV3 (25%), and DENV4 (8.3%). Moreover, DENV1 has the highest MIR (16 per 1000 mosquitoes) compared with DENV2, 3, and 4. The CprM structural gene sequence was used for phylogenetic analysis, revealing that all four strains have a close relationship with strains isolated from India, Pakistan, China and Thailand. Similarly, two variations in amino acid sequence DENV1 at position 43 (K-R) and 86 (S-T) and a single mutation DENV2 at 111 amino acid position were observed., Interpretation & Conclusion: The results of the study provide an in-depth transmission dynamic of the dengue virus and persistence of this emerging pathogen in Telangana, India that needs appropriate prevention programs.
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- 2023
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10. Molecular typing of dengue virus in Mizoram, Northeast India.
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Sailo CV, Ghatak S, Sarathbabu S, Bariha GS, Majumder A, Singh A, Lalremruata R, Zomawia E, Lalrinpuia B, Lalfak Zuali, Zothanzama J, and Senthil Kumar N
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- Humans, Serogroup, Enzyme-Linked Immunosorbent Assay, Molecular Typing, India epidemiology, Antibodies, Viral, Dengue Virus genetics, Dengue epidemiology
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Introduction: Dengue is an emerging vector-borne public health threat and characterization at the molecular level is important for proper management of the disease. The aim of the study is to examine the diversity of the dengue viral serotypes from a hilly mountainous region of Northeast India., Methodology: Thirty-six blood samples that were positive for dengue virus IgM antibodies identified by the enzyme-linked immunosorbent assay (ELISA) method were collected and quantified for the IL6 gene expression by using reverse transcriptase polymerase chain reaction (RT-PCR)., Results: All the patients had dengue hemorrhagic fever (DHF); 12 samples had a monotypic infection and 14 samples had dual infection with various dengue virus (DENV) serotypes; one sample had triple infection with DENV-1, DENV-2, and DENV-3., Conclusions: This study identified DENV-1 as the major serotype in the state of Mizoram and it is the first report on the molecular typing of the dengue virus from the hilly mountainous state located in the Indo-Burma region bordering Myanmar and Bangladesh., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2022 Christine Vanlalbiakdiki Sailo, Souvik Ghatak, Subbarayan Sarathbabu, Girija Shankar Bariha, Ayan Majumder, Abhinav Singh, Ralte Lalremruata, Eric Zomawia, Benjamin Lalrinpuia, Lalfak zuali, John Zothanzama, Nachimuthu Senthil Kumar.)
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- 2022
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11. An overview of dengue viral infection circulating in Pakistan.
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Ali L, Gul Z, Ijaz A, Khalid N, Zeb F, Afzal S, Ullah A, Subhan F, and Ahmed S
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- Antiviral Agents, Humans, Pakistan epidemiology, Serogroup, Dengue epidemiology, Dengue prevention & control, Dengue Virus genetics
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Background & Objectives: Dengue virus (DENV) is an RNA virus that infects approximately 2.5 billion people around the world. The incidence of dengue fever has rapidly increased at an alarming rate in the last few years and has affected thousands of people in Pakistan. This review explores the prevalence, serotypes and pathogenesis of dengue virus circulating in Pakistan., Methods: A systematic review of observational studies published between 1994 and December 2019 was performed. All records of the confirmed outbreak of dengue fever in Pakistan were reviewed and articles containing no primary data were excluded., Results: Four identified serotypes of dengue virus (DENV 1-4) circulate in different regions of the world causing epidemics. The most prevalent serotype, which is still epidemic and dominant in Pakistan, is DENV-2. Many factors like over-population, rapid urbanization, travelling, lack of vector control in dengue endemic areas and inadequate health-care are responsible of dynamic and huge raise of dengue in Pakistan., Interpretation & Conclusion: Currently there is no specific treatment for prevention of dengue virus. Recently some antiviral compounds were being tested to eradicate this disease. There is a need to develop an efficient and safe vaccine for all four serotypes to combat dengue viral infection globally and particularly in Pakistan., Competing Interests: None
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- 2022
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12. Molecular epidemiology of dengue in North Kalimantan, a province with the highest incidence rates in Indonesia in 2019.
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Sasmono RT, Sutjianto A, Santoso MS, Sriwedari K, Yohan B, Mayasanti E, Hayati RF, and Denis D
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- Adolescent, Adult, Borneo epidemiology, Child, Child, Preschool, Humans, Incidence, Indonesia epidemiology, Infant, Middle Aged, Molecular Epidemiology, Prevalence, Seroepidemiologic Studies, Serogroup, Young Adult, Dengue epidemiology, Dengue Virus genetics
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Objectives: Dengue is endemic to Indonesia, a country that has largely varied geographical and demographic conditions across different regions. In 2019, dengue epidemic occurred in North Kalimantan province and recorded as the highest incidence rate in Indonesia. This study aims to investigate the molecular epidemiology of dengue during outbreak in the province and compare the epidemiological characteristics between two cities/towns in North Kalimantan, namely Malinau, an inland town surrounded by a dense rainforest, and Tarakan, an island city., Methods: A cross sectional study was conducted between September 2018 and July 2019. Dengue-like illness patients were recruited in hospitals and tested for dengue NS1 and IgG/IgM. Serological prevalence was measured using IgG ELISA, dengue virus (DENV) serotyping was conducted using RT-PCR and Envelope gene sequencing was performed to infer the virus origins and phylogeny. Clinical, demographical, and diagnostics data were also recorded and analyzed., Results: We recruited 523 patients, 261 from Malinau and 262 from Tarakan. Among them, 349 patients were confirmed dengue. Cases in Malinau had a higher proportion of confirmed dengue (82.0%) compared to those in Tarakan (51.5%). Cases in Malinau were more likely to be dengue hemorrhagic fever with more severe hematological features compared to those in Tarakan. All four DENV serotypes were detected in both cities, the most prevalent serotype being DENV-2. The genetic characteristics of the viruses in the two towns was similar except for DENV-3. No sylvatic DENV was detected as well as alphaviruses and non-dengue flaviviruses during the outbreak., Conclusions: The molecular epidemiology of dengue in North Kalimantan revealed the similar virological characteristics but different clinical and demographic aspects in Malinau and Tarakan. The distinct dengue dynamics between different regions of Indonesia is prominent and this knowledge will be important for understanding future patterns of DENV transmission in the region., (Copyright © 2021 Elsevier B.V. All rights reserved.)
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- 2021
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13. Hyperendemicity associated with increased dengue burden.
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Lim JT, Dickens BS, Tan KW, Koo JR, Seah A, Ho SH, Ong J, Rajarethinam J, Soh S, Cook AR, and Ng LC
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- Bayes Theorem, Disease Outbreaks, Humans, Serogroup, Dengue epidemiology, Dengue Virus
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Over 105 million dengue infections are estimated to occur annually. Understanding the disease dynamics of dengue is often difficult due to multiple strains circulating within a population. Interactions between dengue serotype dynamics may result in complex cross-immunity dynamics at the population level and create difficulties in terms of formulating intervention strategies for the disease. In this study, a nationally representative 16-year time series with over 43 000 serotyped dengue infections was used to infer the long-run effects of between and within strain interactions and their impacts on past outbreaks. We used a novel identification strategy incorporating sign-identified Bayesian vector autoregressions, using structural impulse responses, historical decompositions and counterfactual analysis to conduct inference on dengue dynamics post-estimation. We found that on the population level: (i) across-serotype interactions on the population level were highly persistent, with a one time increase in any other serotype associated with long run decreases in the serotype of interest (range: 0.5-2.5 years) and (ii) over 38.7% of dengue cases of any serotype were associated with across-serotype interactions. The findings in this paper will substantially impact public health policy interventions with respect to dengue.
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- 2021
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14. Emergence of a Novel Dengue Virus 3 (DENV-3) Genotype-I Coincident with Increased DENV-3 Cases in Yangon, Myanmar between 2017 and 2019.
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Soe AM, Ngwe Tun MM, Nabeshima T, Myat TW, Htun MM, Lin H, Hom NS, Inoue S, Nwe KM, Aye LPP, Fukuta M, Thant KZ, Hasebe F, Morita K, Shresta S, Thu HM, and Moi ML
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- Adolescent, Amino Acid Substitution, Child, Child, Preschool, Dengue diagnosis, Dengue history, Dengue Virus isolation & purification, Disease Outbreaks, Genetic Variation, Genome, Viral, History, 21st Century, Humans, Myanmar, Phylogeny, Seroepidemiologic Studies, Serogroup, Whole Genome Sequencing, Communicable Diseases, Emerging epidemiology, Communicable Diseases, Emerging virology, Dengue epidemiology, Dengue virology, Dengue Virus classification, Dengue Virus genetics, Genotype
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Dengue fever, caused by the mosquito-borne dengue virus (DENV), has been endemic in Myanmar since 1970 and it has become a significant public health burden. It is crucial that circulating DENV strains are identified and monitored, and that their transmission efficiency and association with disease severity is understood. In this study, we analyzed DENV-1, DENV-2, DENV-3, and DENV-4 serotypes in 1235 serum samples collected in Myanmar between 2017 and 2019. Whole-genome sequencing of DENV-1-4 demonstrated that most DENV-1-4 strains had been circulating in Myanmar for several years. We also identified the emergence of DENV-3 genotype-I in 2017 samples, which persisted through 2018 and 2019. The emergence of the strain coincided with a period of increased DENV-3 cases and marked changes in the serotype dynamics. Nevertheless, we detected no significant differences between serum viral loads, disease severity, and infection status of individuals infected with different DENV serotypes during the 3-year study. Our results not only identify the spread of a new DENV-3 genotype into Yangon, Myanmar, but also support the importance of DENV evolution in changing the epidemic dynamics in endemic regions.
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- 2021
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15. Dengue RNA detection and seroprevalence in blood donors during an outbreak in the São Paulo State, Brazil, 2016.
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Slavov SN, Santos EV, Hespanhol MR, Rodrigues ES, Haddad R, Ubiali EMA, Covas DT, and Kashima S
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- Adolescent, Adult, Aged, Brazil epidemiology, Dengue transmission, Dengue Virus classification, Humans, Immunoglobulin G blood, Middle Aged, Seroepidemiologic Studies, Serogroup, Young Adult, Antibodies, Viral blood, Blood Donors, Dengue epidemiology, Dengue immunology, Dengue Virus immunology, Disease Outbreaks, RNA, Viral blood, RNA, Viral genetics
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Most dengue virus (DENV) infections remain asymptomatic. This increases the risk of DENV transfusion transmission (TT-DENV) during outbreaks. We evaluated DENV viremia in 8475 blood donations assembled in minipools for the presence of DENV RNA. The tested samples were obtained between February and May, 2016, during a large DENV outbreak in Ribeirão Preto city, northeast region of the São Paulo State, Brazil. The DENV RNA + samples were serotyped and screened for DENV NS1. We also tested a significant number of plasma samples (n = 372) to estimate the DENV seroprevalence among blood donors in the region. We detected three DENV RNA + samples in the tested blood donations (n = 3/8475, 0.04%). From these, two samples were further serotyped as DENV-1 and one sample as DENV-2. All DENV RNA positive samples were negative for anti-DENV IgG, indicating the presence of primary acute infection. Moreover, two of the DENV RNA + samples were also NS1 antigen positive (antigenemia). The anti-DENV IgG seroprevalence among blood donor population was 50.8% (n = 189/372). Our results are in accordance with the presence of DENV primary infection in blood donors which can lead to transfusion transmission of the infection to recipients. Measures to exclude such donors should be adopted to prevent TT-DENV., (© 2020 Wiley Periodicals LLC.)
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- 2021
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16. Circulation of dengue virus serotypes in hyperendemic region of New Delhi, India during 2011-2017.
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Islam A, Abdullah M, Tazeen A, Naqvi IH, Kazim SN, Ahmed A, Alamery SF, Malik A, and Parveen S
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- Genotype, Humans, India epidemiology, Serogroup, Dengue epidemiology, Dengue Virus genetics
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Background: Dengue fever has become a hampering menace in New Delhi India, since the disease has become hyperendemic, due to circulation of multiple serotypes of dengue virus (DENV). This hyperendemicity poses a greater risk of secondary infections in human health system. This is a major issue which leads to apprehension amongst the researchers and health organizations and thus requires regular epidemiological surveillance., Methods: We analyzed the prevalence and serotypic distribution of dengue fever cases reported from the Southern part of New Delhi during continued surveillance from 2011 to 2017. The blood samples for the investigation were obtained from the patients suspected with dengue fever attending the OPD at a local Health Centre. The data for 2011-2016 was already published from our laboratory. The samples collected during 2017 were serotyped and characterized in the present study., Results: A total of 565 samples (59%) were positive for DENV of 958 samples tested by RT-PCR during 7 years (2011-2017). Our study has shown that most infections were caused by DENV-2 during 2011-2015. The data has shown occurrence of all four serotypes of DENV during 2015 and predominance of DENV-3 in 2016 and 2017. Further, predominant combination of DENV-1 and DENV-2 was found in most of the co-infections. To the best of our knowledge this is the first study showing the epidemiological trend of dengue fever in reference to the circulating DENV serotypes and co-infections from a hyperendemic region of New Delhi during 2011-2017., Conclusions: This hyperendemic pattern of DENV and instantaneous shift in circulation of its serotypes is likely pose a greater risk of secondary infections. Inclusion of comprehensive community and hospital surveillance of dengue fever will assist in formulation and implementation of effective control measures., (Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2020
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17. High Dengue Burden and Circulation of 4 Virus Serotypes among Children with Undifferentiated Fever, Kenya, 2014-2017.
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Shah MM, Ndenga BA, Mutuku FM, Vu DM, Grossi-Soyster EN, Okuta V, Ronga CO, Chebii PK, Maina P, Jembe Z, Bosire CM, Amugongo JS, Sahoo MK, Huang C, Weber J, Edgerton SV, Hortion J, Bennett SN, Pinsky BA, and LaBeaud AD
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- Child, Child, Preschool, Cost of Illness, Fever epidemiology, Fever virology, Humans, Kenya epidemiology, Phylogeny, Serogroup, Dengue epidemiology, Dengue Virus classification
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Little is known about the extent and serotypes of dengue viruses circulating in Africa. We evaluated the presence of dengue viremia during 4 years of surveillance (2014-2017) among children with febrile illness in Kenya. Acutely ill febrile children were recruited from 4 clinical sites in western and coastal Kenya, and 1,022 participant samples were tested by using a highly sensitive real-time reverse transcription PCR. A complete case analysis with genomic sequencing and phylogenetic analyses was conducted to characterize the presence of dengue viremia among participants during 2014-2017. Dengue viremia was detected in 41.9% (361/862) of outpatient children who had undifferentiated febrile illness in Kenya. Of children with confirmed dengue viremia, 51.5% (150/291) had malaria parasitemia. All 4 dengue virus serotypes were detected, and phylogenetic analyses showed several viruses from novel lineages. Our results suggests high levels of dengue virus infection among children with undifferentiated febrile illness in Kenya.
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- 2020
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18. Serotype-specific differences in the laboratory parameters among hospitalized children with dengue and genetic diversity of dengue viruses circulating in Tamil Nadu, India during 2017.
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Rajesh NT, Alagarasu K, Patil JA, Bharathi E, More A, Kakade MB, Veronika M, Jothilakshmi K, and Shah PS
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- Adolescent, Alanine Transaminase metabolism, Aspartate Aminotransferases metabolism, Child, Child, Preschool, Cross-Sectional Studies, Dengue blood, Dengue epidemiology, Dengue Virus isolation & purification, Female, Genotype, Hospitalization, Humans, India epidemiology, Infant, Liver enzymology, Male, Phylogeny, Prospective Studies, Serotyping, Severe Dengue epidemiology, Severe Dengue virology, Severity of Illness Index, Dengue virology, Dengue Virus classification, Dengue Virus genetics, Genetic Variation
- Abstract
In 2017, Tamil Nadu, a southern state, had the second highest number of dengue cases from India. In the present study, the serotype-specific differences in the clinical manifestations and laboratory parameters among hospitalized children with dengue were investigated and molecular characterization of the circulating dengue virus (DENV) serotypes during 2017 in Tamil Nadu was performed. Eighty children with dengue-like symptoms consecutively admitted to a tertiary care hospital and positive for DENV NS1 antigen were investigated for DENV serotype utilizing a real-time reverse transcriptase based polymerase chain reaction assay. Complete envelope (E) gene sequencing of the DENV strains was performed. Seventy samples were positive for serotyping (25 DENV-1, 17 DENV-2, six DENV-3, and 22 DENV-4). DENV-4 infections were associated with elevated levels of liver enzymes; Alanine aminotransferase (P = .021) and aspartate aminotransferase (P = .001). However, none of the serotype was associated with any specific clinical features and severe dengue. Asian and American/African genotypes of DENV-1 were cocirculating. The circulating genotype was cosmopolitan for DENV-2 with multiple lineages, genotype III for DENV-3 and genotype I for DENV-4. Unique mutations were present in the 2017 DENV-4 isolates. The present study suggests the association of DENV-4 with elevated liver enzymes in children hospitalized for dengue. Further, the study reports the genetic diversity of DENV circulating in Tamil Nadu during 2017. The study calls for continuous monitoring of the circulating serotypes and genotypes at regional level in India which might result in a region wise database useful in predicting future outbreaks., (© 2019 Wiley Periodicals, Inc.)
- Published
- 2020
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19. Non-structural protein 1 (NS1) of dengue virus detection correlates with severity in primary but not in secondary dengue infection.
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Martínez-Cuellar C, Lovera D, Galeano F, Gatti L, and Arbo A
- Subjects
- Adolescent, Child, Coinfection physiopathology, Dengue physiopathology, Female, Humans, Male, Retrospective Studies, Severity of Illness Index, Coinfection virology, Dengue virology, Dengue Virus, Severe Dengue virology, Viral Nonstructural Proteins blood
- Abstract
Background: Non-structural protein 1 (NS1) of dengue virus circulates in the serum of patients during the acute phase of the disease., Objectives: To determine whether NS1 screening can serve in diagnosing primary and secondary infection and to evaluate its utility as a marker for predicting the severity of dengue in children., Study Design: Patients ≤15 years of age hospitalized for dengue between 2012-2018, with NS1 determination (Panbio, Australia) were included. Clinical y laboratorial characteristics were collected in a standardized data table for analysis of correlation between serotypes, primary or secondary condition of infection, severity, and presence of NS1., Results: Of 709 children hospitalized for dengue with NS1 determination, 479 (67.5 %) had the positive test. Of the 378 primary cases, 320 (85 %) were NS1 (+). while among the 242 secondary cases only 103 (42.5 %) were NS1 (+) (p < 0001). Of the 479 patients with NS1 (+), 344 (72 %) were warnig-signed cases (WSC) and 94 (19 %) were severe cases (SC), being these figures 62 % and 34 %, in the NS1 negative patients respectively (p < 0.001). There was no difference in the frequency of WSC or SC between patients with NS1 positive or negative test in secondary dengue; however, in primary dengue, the figures were 68 % vs 32 % (p < 0.001), and 87 % vs 12 % (p < 0.001), respectively., Conclusions: The presence of NS1 positive test is associated with the condition of infection (primary or secondary) and exhibited an increased risk of developing forms with warning signs or severe dengue in primary cases, but not in secondary cases., Competing Interests: Declaration of Competing Interest No conflict of interest., (Copyright © 2020 Elsevier B.V. All rights reserved.)
- Published
- 2020
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20. Clinical manifestations of primary and secondary dengue in Paraguay and its relation to virus serotype.
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Lovera D, Martínez-Cuellar C, Galeano F, Amarilla S, Vazquez C, and Arbo A
- Subjects
- Adolescent, Child, Child, Preschool, Dengue diagnosis, Dengue Virus pathogenicity, Endemic Diseases, Epidemics, Female, Humans, Male, Paraguay epidemiology, Retrospective Studies, Risk Factors, Serogroup, Severe Dengue diagnosis, Severe Dengue epidemiology, Severe Dengue virology, Dengue epidemiology, Dengue virology, Dengue Virus classification
- Abstract
Introduction: Dengue virus (DENV) infection is currently a major cause of morbidity in the world, and its incidence has mainly increased during the last years in Latin America, including Paraguay. The objective of this study was to compare the clinical and laboratory findings of dengue and assess whether the serotype is a risk factor for severity., Methodology: We included patients ≤ 15 years old hospitalized with dengue at the Institute of Tropical Medicine, from Paraguay, from 2007 to 2018. Patients were classified according to the 2009 WHO dengue classification guidelines and were stratified by serotype into three groups according to the hospitalization period: the 2007 epidemic (DENV-3), the 2012-2013 epidemic (DENV-2) and the 2016-2018 epidemic (DENV-1)., Results: Of 784 children hospitalized for dengue, 50 cases (6.3%) were caused by DENV-3, 471 (60%) by DENV-2, and 263 (33.5%) by DENV-1. Myalgias and headache were associated with DENV-3 cases and abdominal pain was associated with DENV-2 cases. Bleeding was observed mainly in DENV-1 and 2 cases. Patients with DENV-2 infections experienced more severe disease, required fluid expansion more frequently, and exhibited more often shock and admission in the ICU. Secondary cases of dengue were more severe that primary cases. Patients with infection by DENV-2 had longer hospital stays (5.1 ± 2.8 days) when compared to DENV-3 o DENV-1 infection cases (2.9 ± 1.6 days and 4.36 ± 2.7 days, respectively) (p < 0.05)., Conclusions: The DENV serotype has a profound impact on the clinical manifestations and severity of dengue. DENV-2 infections were associated more frequently to requirement of fluid expansion, shock, and longer hospital stay., Competing Interests: No Conflict of Interest is declared, (Copyright (c) 2019 Dolores Lovera, Celia Maetrinez-Cuellar, Fernando Galeano, Sara Amarilla, Cynthia Vazquez, Antonio Arbo.)
- Published
- 2019
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21. Selective Detection of Dengue Virus Serotypes Using Tandem Toehold-Mediated Displacement Reactions.
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Gao M, Waggoner JJ, Hecht SM, and Chen S
- Subjects
- Dengue diagnosis, Dengue Virus chemistry, Dengue Virus genetics, Humans, Microscopy, Confocal, RNA, Viral chemistry, Serogroup, Dengue virology, Dengue Virus isolation & purification, RNA, Viral genetics
- Abstract
Dengue virus (DENV) is the most common human arboviral infection worldwide and can present with severe clinical manifestations. Timely DENV detection improves clinical outcomes, and identification of the DENV serotype (DENV-1-4) may provide beneficial epidemiologic data to inform the initiation of control measures. Here, DENV RNA-triggered, enzyme-free tandem toehold-mediated displacement reactions were developed to identify and serotype DENV in RNA controls and contrived samples through the amplification of a fluorescent signal detected by the use of a fluorescent scanner and a confocal microscope. Each DENV serotype was detected selectively using both imaging methods. In addition, a 384-well plate was used to prepare an array for diagnosis of the four DENV RNA serotypes from contrived clinical samples. The four serotypes of dengue virus were detected using novel enzyme-free amplification reactions, which are more facile than amplification using reverse transcriptase PCR.
- Published
- 2019
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22. Dengue Fever in the Darfur Area, Western Sudan.
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Ahmed A, Ali Y, Elmagboul B, Mohamed O, Elduma A, Bashab H, Mahamoud A, Khogali H, Elaagip A, and Higazi T
- Subjects
- Female, Humans, Male, Seasons, Severe Dengue epidemiology, Sudan epidemiology, Dengue epidemiology, Dengue virology, Dengue Virus classification, Dengue Virus genetics, Disease Outbreaks
- Abstract
We report an outbreak of dengue in Darfur, western Sudan, during September 2014-April 2015. Dengue virus-specific PCR testing of 50 samples from nonmalaria febrile illness case-patients confirmed 35 dengue cases. We detected 7 cases of dengue shock syndrome and 24 cases of dengue hemorrhagic fever.
- Published
- 2019
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23. Admission Clinicopathological Factors Associated with Prolonged Hospital Stay Among Hospitalized Patients with Dengue Viral Infections.
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Willeam Peter SS, Hassan SS, Khei Tan VP, Ngim CF, Azreen Adnan NA, Pong LY, and Dhanoa A
- Subjects
- Adolescent, Adult, Aged, Child, Dengue blood, Dengue complications, Diabetes Complications, Female, Humans, Logistic Models, Malaysia, Male, Middle Aged, Retrospective Studies, Serogroup, Tertiary Care Centers, Viral Nonstructural Proteins genetics, Dengue physiopathology, Dengue Virus, Fever, Length of Stay statistics & numerical data
- Abstract
Background: There is an escalation of frequency and magnitude of dengue epidemics in Malaysia, with a concomitant increase in patient hospitalization. Prolonged hospitalization (PH) due to dengue virus (DENV) infections causes considerable socioeconomic burden. Early identification of patients needing PH could optimize resource consumption and reduce health care costs. This study aims to identify clinicopathological factors present on admission that are associated with PH among patients with DENV infections. Methods: This study was conducted in a tertiary referral hospital in Southern Malaysia. Relevant clinical and laboratory data upon admission were retrieved from medical records of 253 consecutive DENV nonstructural protein 1 (NS1) antigen and PCR-positive hospitalized patients. The DENV serotype present in each patient was determined. Patients were stratified based on duration of hospital stay (<4 vs. ≥4 days). Data were analyzed using IBM
® SPSS® 25.0. Multivariate logistic regression was performed to examine the association between PH and admission parameters. Results: Of 253 DENV hospitalized patients, 95 (37.5%) had PH (≥4 days). The mean duration of hospital stay was 3.43 ± 2.085 days (median = 3 days, interquartile range = 7 days). Diabetes mellitus (adjusted odds ratio [AOR] = 6.261, 95% confidence interval [CI] = 2.130-18.406, p = 0.001), DENV-2 serotype (AOR = 2.581, 95% CI = 1.179-5.650, p = 0.018), duration of fever ≤4 days (AOR = 2.423, 95% CI = 0.872-6.734, p = 0.09), and a shorter preadmission fever duration (AOR = 0.679, 95% CI = 0.481-0.957, p = 0.027) were independently associated with PH. However, PH was not found to be associated with symptoms on admission, secondary DENV infections or platelet count, hematocrit, or liver enzyme levels on admission. Conclusions: Early identification of these factors at presentation may alert clinicians to anticipate and recognize challenges in treating such patients, leading to more focused management plans that may shorten the duration of hospitalization.- Published
- 2019
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24. Co-circulation of dengue virus serotypes in Central India: Evidence of prolonged viremia in DENV-2.
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Agarwal A, Gupta S, Chincholkar T, Singh V, Umare IK, Ansari K, Paliya S, Yadav AK, Chowdhary R, Purwar S, and Biswas D
- Subjects
- Adolescent, Adult, Antigenic Variation genetics, Antigenic Variation immunology, Antigens, Viral genetics, Antigens, Viral immunology, Cross-Sectional Studies, Dengue epidemiology, Dengue Virus genetics, Female, Genome-Wide Association Study, Humans, Immune Evasion immunology, India epidemiology, Male, Serotyping, Young Adult, Dengue immunology, Dengue Virus immunology, Viremia immunology
- Abstract
In view of paucity of information on serotype distribution of Dengue virus (DENV) in Central India, we undertook a cross-sectional study to identify clinical and virological characteristics of DENV serotypes that circulated in this region during the 2016 outbreak. Suspected cases were screened by ELISA for NS1 antigen and anti-DENV IgM antibodies. Serologically confirmed cases were subjected to RT-PCR based detection and serotyping. The RT-PCR results were confirmed by nucleotide sequencing. Genome-wide association was undertaken with DENV sequences from ViPR database and the immune evasion potential of infecting serotypes was ascertained by computing antigenic variability in B cell and Cytotoxic T cell (CTL) epitopes of all DENV proteins. The immunological basis of more prolonged viremia in DENV2-infected patients was also addressed through sequencing of NS2a gene and comparing the CTL activity in NS2a sequences identified among patients with ≤5 days and >5 days of illness. Among 166 serologically confirmed Dengue patients, 75 were positive for DENV RNA. Serotyping revealed predominance of DENV-1 and DENV-2, followed by DENV-3. Co-infection with multiple serotypes was observed in 15.5% of cases. In ~40% cases, DENV RNA was detectable beyond 5 days, among whom majority were DENV-2 infected (p = .044). Highest prevalence of antigenic variability was observed in B cell and CTL epitopes of DENV-2. The potential association between prolonged viremia and higher ability for immune evasion in DENV-2 patients was further corroborated with the observation of poorer HLA-I binding affinity in CTL epitopes observed in NS2a sequences retrieved from patients with >5 days of illness, compared to those with ≤5 days. This is the first report from central India revealing circulation of all DENV serotypes and high prevalence of co-infection with multiple serotypes. We also observed prolonged viremia upon DENV-2 infection, which could be potentially associated with its superior immune evasion potential., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2019
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25. An "on-matrix" digestion procedure for AP-MS experiments dissects the interplay between complex-conserved and serotype-specific reactivities in Dengue virus-human plasma interactome.
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Ramos Y, Huerta V, Martín D, Palomares S, Yero A, Pupo D, Gallien S, Martín AM, Pérez-Riverol Y, Sarría M, Guirola O, Chinea G, Domon B, and González LJ
- Subjects
- Cell Line, Tumor, Humans, Blood Proteins metabolism, Dengue blood, Dengue Virus metabolism, Plasma metabolism, Protein Interaction Maps, Serogroup
- Abstract
The interactions between the four Dengue virus (DENV) serotypes and plasma proteins are crucial in the initial steps of viral infection to humans. Affinity purification combined with quantitative mass spectrometry analysis, has become one of the most powerful tools for the investigation on novel protein-protein interactions. Using this approach, we report here that a significant number of bait-interacting proteins do not dissociate under standard elution conditions, i.e. acid pH and chaotropic agents, and that this problem can be circumvented by using the "on-matrix" digestion procedure described here. This procedure enabled the identification of 16 human plasma proteins interacting with domain III from the envelope protein of DENV serotypes 1, 3 and 4 that would have not been detected otherwise and increased the known DIIIE interactors in human plasma to 59 proteins. Selected Reaction Monitoring analysis evidenced DENV interactome in human plasma is rather conserved although significant differences on the reactivity of viral serotypes with specific proteins do exist. A comparison between the serotype-dependent profile of reactivity and the conservation pattern of amino acid residues suggests an evolutionary selection of highly conserved interactions with the host and other interactions mediated for surface regions of higher variability. SIGNIFICANCE: False negative results on the identification of interacting proteins in pull-down experiments compromise the subsequent interpretation of results and the formulation of a working hypothesis for the derived future work. In this study we demonstrate the presence of bait-interacting proteins reluctant to dissociate under elution conditions of acid pH and presence of chaotropics. We propose the direct proteolytic digestion of proteins while still bound to the affinity matrix ("on-matrix" digestion) and evaluate the impact of this methodology in the comparative study of the interactome of the four serotypes of Dengue virus mediated by the domain III of the viral envelope glycoprotein. Fifty nine proteins were identified as putative interaction partners of Dengue virus (IPs) either due to direct binding or by co-isolation with interacting proteins. Collectively the IPs identified from the pull-down with the recombinant domain III proteins representing the four viral serotypes, 29% were identified only after "on-matrix" digestion which demonstrate the usefulness of this method of recovering bait-bound proteins. Results highlight a particular importance of "on-matrix" digestion procedure for comparative studies where a stronger interaction with one of the interest baits could prevent a bound protein to elute under standard conditions thus leading to misinterpretation as absent in the interactome of this particular bait. The analysis of the Interaction Network indicates that Dengue virus interactome mediated by the domain III of the envelope protein is rather conserved in the viral complex suggesting a key role of these interactions for viral infection thus making candidates to explore for potential biomarkers of clinical outcome in DENV-caused disease. Interestingly, some particular IPs exhibit significant differences in the strength of the interaction with the viral serotypes representing interactions that involve more variable regions in the surface of the domain III. Since such variable regions are the consequence of the interaction with antibodies generated by human immune response; this result relates the interaction with proteins from human plasma with the interplay of the virus and the human immune system., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2019
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26. Dengue Virus IgM Serotyping by ELISA with Recombinant Mutant Envelope Proteins.
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Rockstroh A, Barzon L, Kumbukgolla W, Su HX, Lizarazo E, Vincenti-Gonzalez MF, Tami A, Ornelas AMM, Aguiar RS, Cadar D, Schmidt-Chanasit J, and Ulbert S
- Subjects
- Cross Reactions, Dengue diagnosis, Dengue virology, Dengue Virus classification, Dengue Virus genetics, Enzyme-Linked Immunosorbent Assay, Germany epidemiology, Humans, Italy epidemiology, Mutant Proteins immunology, Recombinant Proteins, Serotyping, Antibodies, Viral blood, Dengue epidemiology, Dengue Virus immunology, Endemic Diseases, Immunoglobulin M blood, Viral Envelope Proteins immunology
- Abstract
We developed an IgM-based ELISA that identifies the dengue virus serotype of recent infections. Dominant serotypes were detectable in 91.1% of samples from travelers and 86.5% of samples from residents of endemic regions; 97.1% corresponded to the serotype identified by PCR. This ELISA enables more accurate reporting of epidemiologic findings.
- Published
- 2019
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27. Emergence of dengue virus type 1 and type 3 as dominant serotypes during 2017 in Pune and Nashik regions of Maharashtra, Western India.
- Author
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Patil JA, Alagarasu K, Kakade MB, More AM, Gadekar KA, Jadhav SM, Parashar D, and Shah PS
- Subjects
- Dengue history, Dengue Virus isolation & purification, Disease Outbreaks, Genotype, Geography, Medical, History, 21st Century, Humans, India epidemiology, Molecular Epidemiology, Phylogeny, Phylogeography, Recombination, Genetic, Selection, Genetic, Serogroup, Viral Envelope Proteins genetics, Dengue epidemiology, Dengue virology, Dengue Virus classification, Dengue Virus genetics
- Abstract
India witnessed dengue outbreaks during 2017 in different parts with more than 180000 cases. There is no data on the serotypes/genotypes of dengue virus (DENV) associated with the 2017 outbreak season. The present study investigated DENV circulating in Pune and Nashik regions of Maharashtra, Western India at molecular level. IgM negative samples that were collected before 6
th post onset days of illness were tested for DENV RNA and serotyped by real time RT-PCR based methods. Representative samples of each serotype were processed for virus isolation and envelope (E) gene sequencing. Among the 472 samples tested for DENV serotypes from Nashik, DENV-1 was observed in 36.2%, DENV-2 in 12.9%, DENV-3 in 35.4%, DENV-4 in 8.0%, and multiple serotypes in 7.4% of the samples respectively. In Pune region, among the 109 samples tested for DENV serotypes, DENV-1 was observed in 27.5%, DENV-2 in 11.0%, DENV-3 in 52.3%, DENV-4 in 4.6%, and multiple serotypes in 4.6% of the samples respectively. Comparison of serotype distribution from 2009 to 2017 from the Pune region revealed the emergence of DENV-3 as the dominant serotype followed by DENV-1 in 2017. In the Nashik region, both DENV-1 and DENV-3 were predominant in 2017. Phylogenetic analyses revealed co-circulation of American African (AM/AF) and Asian genotypes of DENV-1. DENV-1 Asian genotype was detected for the first time in the region. No genotype changes were observed for DENV-2 (cosmopolitan genotype), DENV-3 (genotype III) and DENV-4 (genotype I). For DENV-3, a unique amino acid substitution (I380T) was observed in the domain III of E protein of 2017 isolates and was not observed in earlier DENV-3 genotype III isolates. To conclude, the results suggest the emergence of DENV-1 with circulation of both Asian and AM/AF genotypes and DENV-3 with unique amino acid substitutions in Pune and Nashik regions. The study underscores the need for continuous molecular monitoring at a large scale to detect the changes in DENV serotypes/genotypes that might have implications for earlier prediction of dengue outbreaks and designing dengue vaccines and predicting its efficacy., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2018
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28. An epidemiological study of dengue and its coinfections in Delhi.
- Author
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Savargaonkar D, Sinha S, Srivastava B, Nagpal BN, Sinha A, Shamim A, Das R, Pande V, Anvikar AR, and Valecha N
- Subjects
- Adolescent, Adult, Aedes virology, Animals, Chikungunya Fever complications, Chikungunya Fever transmission, Child, Child, Preschool, Coinfection parasitology, Coinfection virology, Dengue complications, Dengue transmission, Dengue virology, Dengue Virus genetics, Dengue Virus isolation & purification, Dengue Virus physiology, Epidemiologic Studies, Female, Humans, India epidemiology, Malaria complications, Malaria epidemiology, Malaria parasitology, Male, Middle Aged, Mosquito Vectors physiology, Mosquito Vectors virology, Serogroup, Young Adult, Chikungunya Fever epidemiology, Coinfection epidemiology, Dengue epidemiology
- Abstract
Objectives: To study the epidemiology of dengue with reference to serological, demographic profile, spatio-temporal distribution, vectors, circulating serotypes and coinfections., Methods: Demographic data and presenting symptoms of fever cases reporting to the clinic were recorded. Suspected patients were tested for dengue, chikungunya and malaria. Dengue specific RT-PCR was performed to detect circulating DENV serotypes. Vector surveys were carried out to detect Aedes breeding., Results: Of the 5536 fever patients tested during 2012 to 2015, 1536 (27.7%) had confirmed dengue. The peak in dengue positivity was observed during September and October. Of the 60 samples analysed, 10 (16.7%) had concurrent infection with multiple dengue serotypes; one of them had all the four serotypes. Coinfection of dengue with malaria and chikungunya was also observed. The occurrence of dengue and malaria was inversely related. Seven percent of the dengue patients required hospitalization. Vector surveys in the draining area revealed Aedes breeding with a high house index., Conclusion: Delhi being hyperendemic, the occurrence of concurrent infections with multiple DENV serotypes has become a frequent finding. The study emphasizes the need of epidemiological and entomological surveillance to monitor trends in dengue distribution, seasonal patterns and circulating serotypes to guide dengue control activities., (Copyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2018
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29. Circulation of all dengue virus serotypes during dengue outbreak in Sandakan, Sabah, Malaysia (2016).
- Author
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Gintarong TJ, Emran A, Sherin A, Thein TT, and Aung TS
- Subjects
- Adolescent, Adult, Aedes physiology, Aedes virology, Aged, Animals, Child, Coinfection epidemiology, Coinfection virology, Cross-Sectional Studies, Dengue blood, Dengue transmission, Dengue virology, Dengue Virus classification, Dengue Virus isolation & purification, Female, Humans, Malaysia epidemiology, Male, Middle Aged, Polymerase Chain Reaction, RNA, Viral chemistry, RNA, Viral isolation & purification, Viral Nonstructural Proteins immunology, Young Adult, Dengue epidemiology, Dengue Virus immunology, Disease Outbreaks, Serogroup
- Abstract
Competing Interests: None
- Published
- 2018
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30. Co-circulation of four dengue serotypes at South Eastern Andhra Pradesh, India: A prospective study.
- Author
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Racherla RG, Pamireddy ML, Mohan A, Mudhigeti N, Mahalakshmi PA, Nallapireddy U, and Kalawat U
- Subjects
- Adolescent, Adult, Dengue Virus metabolism, Enzyme-Linked Immunosorbent Assay, Female, Humans, India, Male, Middle Aged, Prospective Studies, RNA, Viral genetics, RNA, Viral metabolism, Serogroup, Viral Nonstructural Proteins genetics, Viral Nonstructural Proteins metabolism, Young Adult, Dengue epidemiology, Dengue virology, Dengue Virus pathogenicity
- Abstract
Background: Dengue is one of the most important mosquito-borne viral diseases in the world. The emergence and spread of four dengue viruses (DENVs) (serotypes) represent a global pandemic. The four distinct serotypes are, namely, DENV-1, DENV-2, DENV-3 and DENV-4. Very few dengue serotyping studies have been reported from Andhra Pradesh. In this context, the present study focuses on the circulating serotypes of dengue in South-Eastern Andhra Pradesh., Methodology: Study was done at Sri Venkateswara Institute of Medical Sciences, a teaching hospital in Tirupati, Andhra Pradesh. Acute phase dengue serum samples were collected and tested for NS1 antigen and anti-human IgM antibodies by enzyme-linked immunosorbent assay (ELISA). NS1-positive samples were further serotyped by reverse transcriptase real-time polymerase chain reaction (rRT-PCR)., Results: A total of 398 serum samples were received from clinically suspected dengue fever cases. Of these, 150 (37.7%) samples were positive for NS1 and/or IgM ELISA. The 96 NS1 antigen-positive samples were further processed for serotyping, of which 36 were negative by rRT-PCR. DENV-2 (41%) was the predominant serotype, followed by DENV-4 (37%), DENV-3 (12%) and DENV-1 (10%) in descending order., Conclusion: This study reports the all four dengue serotypes' co-circulation. This is the first report from South Eastern Andhra Pradesh. Amongst four, DENV-2 was predominant followed by DENV-4. The information of predominant serotypes can guide in forecasting dengue outbreaks and improving control measures of vectors thus may be helpful in the prevention of outbreaks., Competing Interests: There are no conflicts of interest
- Published
- 2018
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31. Transmission dynamics of two dengue serotypes with vaccination scenarios.
- Author
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González Morales NL, Núñez-López M, Ramos-Castañeda J, and Velasco-Hernández JX
- Subjects
- Animals, Dengue immunology, Dengue prevention & control, Humans, Dengue transmission, Dengue Vaccines, Dengue Virus immunology, Models, Theoretical, Mosquito Vectors, Serogroup
- Abstract
In this work we present a mathematical model that incorporates two Dengue serotypes. The model has been constructed to study both the epidemiological trends of the disease and conditions that allow coexistence in competing strains under vaccination. We consider two viral strains and temporary cross-immunity with one vector mosquito population. Results suggest that vaccination scenarios will not only reduce disease incidence but will also modify the transmission dynamics. Indeed, vaccination and cross immunity period are seen to decrease the frequency and magnitude of outbreaks but in a differentiated manner with specific effects depending upon the interaction vaccine and strain type., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2017
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32. Dengue Virus Serotypes Circulating in Khyber Pakhtunkhwa Province, Pakistan, 2013-2015.
- Author
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Suleman M, Faryal R, Alam MM, Sharif S, Shaukat S, Aamir UB, Khurshid A, Angez M, Umair M, Sufian MM, Arshad Y, and Zaidi SS
- Subjects
- Adolescent, Adult, Dengue diagnosis, Dengue virology, Dengue Virus genetics, Disease Outbreaks, Female, Humans, Male, Middle Aged, Pakistan epidemiology, RNA, Viral genetics, RNA, Viral metabolism, Real-Time Polymerase Chain Reaction, Serogroup, Young Adult, Dengue epidemiology, Dengue Virus isolation & purification
- Abstract
From 2013 to 2015, the National Institute of Health, Pakistan, received 1,270 blood samples of suspected dengue cases reported from inpatient and outpatient departments of various hospitals in Khyber Pakhtunkhwa (KPK) province. In this study, we determined the circulating dengue virus (DENV) serotypes using real-time reverse transcriptase (RT)-PCR to understand the serotype-based epidemiology of DENV. All four serotypes (DENV-1 [6%], DENV-2 [33%], DENV-3 [47%], and DENV-4 [0.1%]) were found circulating during the study period. Our findings suggest the need for an active surveillance system coupled with the laboratory diagnosis, especially in the chronic endemic areas of the country. Public awareness programs are needed for effective control and prevention of outbreaks in the future., Competing Interests: Authors' Disclosures of Potential Conflicts of Interest: No potential conflicts of interest relevant to this article were reported.
- Published
- 2017
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33. Twelve years of dengue surveillance in Belgian travellers and significant increases in the number of cases in 2010 and 2013.
- Author
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Verschueren J, Cnops L, and van Esbroeck M
- Subjects
- Adolescent, Adult, Aged, Belgium epidemiology, Child, Child, Preschool, Dengue Virus classification, Enzyme-Linked Immunosorbent Assay, Epidemiological Monitoring, Female, Humans, Incidence, Infant, Male, Middle Aged, Reverse Transcriptase Polymerase Chain Reaction, Serogroup, Young Adult, Dengue epidemiology, Dengue Virus isolation & purification, Travel
- Abstract
During 12 years of surveillance in Belgium, dengue virus (DENV) infection was diagnosed in 676 of 7771 (8.7%) returning travellers by the use of ELISA, RT-PCR, and/or antigen detection. Men and women were equally infected. The mean age of the patients was 36.78 years (range, 3-77 years). Most of the infections occurred after a stay in Asia (55.9%), followed by the Americas (31.8%), Africa (7.2%), Oceania (1.0%), and Europe (0.4%). The number of patients coming from Africa increased as of 2009, to reach a proportion of 17% in 2011. The most prevalent serotype was DENV-1, followed by DENV-2, DENV-3, and DENV-4. Two remarkable increases in dengue incidence were noticed in 2010 and 2013., (Copyright © 2015 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2015
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34. Global spread of dengue virus types: mapping the 70 year history.
- Author
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Messina JP, Brady OJ, Scott TW, Zou C, Pigott DM, Duda KA, Bhatt S, Katzelnick L, Howes RE, Battle KE, Simmons CP, and Hay SI
- Subjects
- Dengue history, Dengue virology, Dengue Virus isolation & purification, History, 20th Century, History, 21st Century, Dengue epidemiology, Dengue transmission, Dengue Virus classification, Phylogeography, Topography, Medical
- Abstract
Since the first isolation of dengue virus (DENV) in 1943, four types have been identified. Global phenomena such as urbanization and international travel are key factors in facilitating the spread of dengue. Documenting the type-specific record of DENV spread has important implications for understanding patterns in dengue hyperendemicity and disease severity as well as vaccine design and deployment strategies. Existing studies have examined the spread of DENV types at regional or local scales, or described phylogeographic relationships within a single type. Here we summarize the global distribution of confirmed instances of each DENV type from 1943 to 2013 in a series of global maps. These show the worldwide expansion of the types, the expansion of disease hyperendemicity, and the establishment of an increasingly important infectious disease of global public health significance., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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35. SEVERITY PREDICTION MARKERS IN DENGUE: A PROSPECTIVE COHORT STUDY USING MACHINE LEARNING APPROACH.
- Author
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Jean Pierre, Aashika Raagavi, Green, Siva Ranganathan, A, LokeshMaran, Sivaprakasam, Manikandan, Kasirajan, Anand, Devaraju, Panneer, Anumulapuri, Srilehka, Mutheneni, Srinivasa Rao, and Balakrishna Pillai, Agieshkumar
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AbstractBackgroundMethodsResultsConclusionDengue virus causes illnesses with or without warning indicators for severe complications. There are no clear prognostic signs linked to the disease outcomes.Clinical and laboratory parameters among 102 adult including 17 severe dengue (SD), 33 with warning and 52 without warning signs during early and critical phases were analyzed by statistical and machine learning (ML) models.In classical statistics, abnormal ultrasound findings, platelet count, and low lymphocytes were significantly linked with SD during the febrile phase, while low creatinine, high sodium, and elevated AST/ALT during the critical phase. ML models highlighted AST/ALT and lymphocytes as key markers for distinguishing SD from non-severe dengue, aiding clinical decisions.Parameters like liver enzymes, platelet counts and USG findings were linked with SD.USG testing at an earlier phase of dengue and a point-of-care system for the quantification of AST/ALT levels may lead to an early prediction of SD. [ABSTRACT FROM AUTHOR]
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- 2024
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36. Detection of dengue virus serotype 4 in Panama after 23 years without circulation.
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Chen-Germán, María, Araúz, Dimelza, Aguilar, Celestino, Vega, Melanie, Gonzalez, Claudia, Gondola, Jessica, Moreno, Lourdes, Cerezo, Lizbeth, Franco, Leticia, Mendez-Rico, Jairo, Pascale, Juan Miguel, López-Vergès, Sandra, Martínez, Alexander A., and Moreno, Brechla
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DENGUE viruses ,SEROTYPES ,GENOTYPES ,GENOMES ,COUNTRIES ,DENGUE - Abstract
Panama is a country with endemic Dengue virus (DENV) transmission since its reintroduction in 1993. The four serotypes have circulated in the country and the region of the Americas, however, DENV-4 confirmed autochthonous cases have not been identified since 2000, despite its circulation in neighboring countries. Here, we report DENV-4 detection in Panama in the last four-month period of 2023 with cocirculation of the other serotypes, this was associated with a peak of dengue cases during the dry season even thoughmost dengue outbreaks are described in the rainy season. Complete genomes of DENV-4 allowed us to determine that cases were caused by DENV-4 genotype IIb, the same genotype as 23 years ago, with high similarity to DENV-4 sequences circulating in Nicaragua and El Salvador during 2023. This report shows the importance ofmaintaining serotype and genotype surveillance for early detection of new variants circulating in the country. [ABSTRACT FROM AUTHOR]
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- 2024
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37. Estimating the force of infection of four dengue serotypes from serological studies in two regions of Vietnam.
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Phuong, Huynh Thi, Vy, Nguyen Ha Thao, Thanh, Nguyen Thi Le, Tan, Maxine, de Bruin, Erwin, Koopmans, Marion, Boni, Maciej F., and Clapham, Hannah E.
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HERD immunity , *INFECTIOUS disease transmission , *VACCINE effectiveness , *DENGUE , *SEROTYPES , *DENGUE hemorrhagic fever - Abstract
Dengue is endemic in Vietnam with circulation of all four serotypes (DENV1-4) all year-round. It is hard to estimate the disease's true serotype-specific transmission patterns from cases due to its high asymptomatic rate, low reporting rate and complex immunity and transmission dynamics. Seroprevalence studies have been used to great effect for understanding patterns of dengue transmission. We tested 991 population serum samples (ages 1–30 years, collected 2013 to 2017), 531 from Ho Chi Minh City and 460 from Khanh Hoa in Vietnam, using a flavivirus protein microarray assay. By applying our previously developed inference framework to the antibody profiles from this assay, we can (1) determine proportions of a population that have not been infected or infected, once, or more than once, and (2) infer the infecting serotype in those infected once. With these data, we then use mathematical models to estimate the force of infection (FOI) for all four DENV serotypes in HCMC and KH over 35 years up to 2017. Models with time-varying or serotype-specific DENV FOI assumptions fit the data better than constant FOI. Annual dengue FOI ranged from 0.005 (95%CI: 0.003–0.008) to 0.201 (95%CI: 0.174–0.228). FOI varied across serotypes, higher for DENV1 (95%CI: 0.033–0.048) and DENV2 (95%CI: 0.018–0.039) than DENV3 (95%CI: 0.007–0.010) and DENV4 (95%CI: 0.010–0.016). The use of the PMA on serial age-stratified cross-sectional samples increases the amount of information on transmission and population immunity, and should be considered for future dengue serological surveys, particularly to understand population immunity given vaccines with differential efficacy against serotypes, however, there remains limits to what can be inferred even using this assay. Author summary: Dengue is endemic in Vietnam and this virus consists of four serotypes (DENV1-4) that circulate- all year-round. It has complex transmission and immunity dynamics, which makes serotype-specific transmission patterns difficult to estimate. Moreover, high asymptomatic rates which leads to under reporting and little serotype testing of cases adds to this issue. Many studies have shown that seroprevalence studies are useful to understanding dengue transmission patterns, hence, we undertook a seroprevalence studies in Ho Chi Minh City and Khanh Hoa, Vietnam. We tested samples using a flavivirus protein microarray (PMA) serological assay and used previously developed frameworks to estimate past infection exposures for each individual. With these past exposure histories, we estimated the transmission intensity for all four dengue serotypes. We found this method provided substantial information on past serotype transmission. We estimated the annual dengue force of infection (FOI) ranged from 0.005 (95%CI: 0.003–0.008) to 0.201 (95%CI: 0.174–0.228). FOI varied across serotypes, higher for DENV1 (95%CI: 0.033–0.048) and DENV2 (95%CI: 0.018–0.039) than DENV3 (95%CI: 0.007–0.010) and DENV4 (95%CI: 0.010–0.016). This method can be used for planning future control measures, especially vaccination. [ABSTRACT FROM AUTHOR]
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- 2024
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38. Current advances in nano drug delivery system for dengue treatment and prevention.
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Thorat, Prajakta Jaywant, Kumbhare, Manoj Ramesh, Kshatriya, Vaibhavi Vijay, Jadhav, Shraddha Vikas, and Bhambarge, Rushikesh Gajanan
- Abstract
Dengue is a most important mosquito-borne viral illnesses. The disease is caused by dengue viruses that have four serotypes: dengue 1, dengue 2, dengue 3 and dengue 4. Primary infection usually results in milder illness, while more severe disease occurs in cases of repeated infection with different serotypes. Nanoparticles can offer significant advantages over the conventional drug delivery in terms of high stability, high specificity, high drug carrying capacity, ability for controlled release, possibility to use in different route of administration and the capability to deliver both hydrophilic and hydrophobic drug molecules. Due to the high prevalence of dengue viruses, it is required to develop novel treatment strategies and provide the site-specific delivery of drug reservoirs. [ABSTRACT FROM AUTHOR]
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- 2024
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39. Detection of DENV-1, DENV-3, and DENV-4 Serotypes in Aedes aegypti and Aedes albopictus, and Epidemic Risk in the Departments of Oueme and Plateau, South-Eastern Benin.
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Padonou, Germain Gil, Konkon, Alphonse Keller, Zoungbédji, David Mahouton, Salako, Albert Sourou, Sovi, Arthur, Oussou, Olivier, Sidick, Aboubakar, Ahouandjinou, Juvénal, Towakinou, Linda, Ossé, Razaki, Baba-Moussa, Lamine, and Akogbéto, Martin Codjo
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AEDES aegypti , *AEDES albopictus , *AEDES , *MOSQUITOES , *SEROTYPES , *DENGUE viruses , *DENGUE - Abstract
Background: This study conducted in the departments of Oueme and Plateau aims to assess the presence of the dengue virus and its different serotypes in Aedes aegypti and Aedes albopictus, as well as the epidemic risk incurred by the populations. Methods: Collections of adult mosquitoes using human landing catches (HLC) were carried out in six communes, three (Porto-Novo, Adjarra, and Avrankou) in the Oueme department and the rest (Ifangni, Kétou, and Pobè) in the Plateau department. Pools of ten Aedes mosquitoes were formed, and stored at −80°C in RNA later. RT-PCR was used to detect dengue virus, and conventional PCR for the different serotypes. Inspection of water containers and collection of Aedes larvae was performed inside and around each house to calculate the stegomyan indices. Results: In the six communes, the dengue virus was present both in Ae. aegypti and Ae. albopictus. Combined data of the two Aedes species at the communes level revealed infection rates ranging from 80.00% (95% CI: 61.43–92.29) to 96.67% (95% CI: 82.78–99.92). In all the communes, the values of stegomyan indices reached the WHO threshold, which indicates the existence of the risk of an arbovirus epidemic. In addition, the infection rates were similar for Ae. aegypti [88.19% (95% CI: 81.27–93.24)] and Ae. albopictus [86.79% (95% CI: 74.66–94.52)]. The three virus serotypes detected in the pools of Aedes were DENV-1, DENV-3, and DENV-4, with a high prevalence for the first two. Conclusion: This study revealed that three serotypes (DENV-1, DENV-3, and DENV-4) of dengue virus circulate in Ae. aegypti and Ae. albopictus in the departments of Oueme and Plateau. Moreover, the risk of transmission of arboviruses was globally high and variable from commune to commune. This information is essential for informed decision-making in the preventive control of the disease. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Molecular surveillance for dengue serotypes among the population living in Moyen-Ogooué province, Gabon; evidence of the presence of dengue serotype 1
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Rodrigue Bikangui, Soulemane Parkouda, Ayong More, Marien Veraldy Magossou Mbadinga, Ismael Piérrick Mikelet Boussoukou, Georgelin Nguema Ondo, Anne Marie Mouina Nkoma, Rafiou Adamou, Yabo Josiane Honkpehedji, Elie Gide Rossatanga, Yuri Ushijima, Haruka Abe, Bertrand Lell, Jean Claude Dejon-Agobé, Jiro Yasuda, and Ayola Akim Adegnika
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Dengue ,Serotypes ,Circulation ,Moyen Ogooué ,Gabon ,Symptoms ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Despite dengue virus (DENV) outbreak in Gabon a decade ago, less is known on the potential circulation of DENV serotypes in the country. Previous studies conducted in some areas of the country, are limited to hospital-based surveys which reported the presence of some cases of serotype 2 and 3 seven years ago and more recently the serotype 1. As further investigation, we extend the survey to the community of Moyen Ogooué region with the aim to assess the presence of the dengue virus serotypes, additionally to characterize chikungunya (CHIKV) infection and describe the symptomatology associated with infections. Method A cross-sectional survey was conducted from April 2020 to March 2021. The study included participants of both sexes and any age one year and above, with fever or history of fever in the past seven days until blood collection. Eligible volunteers were clinically examined, and blood sample was collected for the detection of DENV and CHIKV using RT-qPCR. Positive samples were selected for the target sequencing. Results A total of 579 volunteers were included. Their mean age (SD) was 20 (20) years with 55% of them being female. Four cases of DENV infection were diagnosed giving a prevalence of 0.7% (95%CI: 0.2–1.8) in our cohort while no case of CHIKV was detected. The common symptoms and signs presented by the DENV cases included fatigue, arthralgia myalgia, cough, and loss of appetite. DENV-1was the only virus detected by RT-qPCR. Conclusion Our results confirm the presence of active dengue infection in the region, particularly DENV-1, and could suggest the decline of DENV-2 and DENV-3. Continuous surveillance remains paramount to comprehensively describe the extent of dengue serotypes distribution in the Moyen-Ogooué region of Gabon.
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- 2024
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41. Introduction of New Dengue Virus Lineages of Multiple Serotypes after COVID-19 Pandemic, Nicaragua, 2022
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Cristhiam Cerpas, Gerald Vásquez, Hanny Moreira, Jose G. Juarez, Josefina Coloma, Eva Harris, Shannon N. Bennett, and Ángel Balmaseda
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dengue ,neglected disease ,dengue virus ,genome ,serotypes ,viruses ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Major dengue epidemics throughout Nicaragua’s history have been dominated by 1 of 4 dengue virus serotypes (DENV-1–4). To examine serotypes during the dengue epidemic in Nicaragua in 2022, we performed real-time genomic surveillance in-country and documented cocirculation of all 4 serotypes. We observed a shift toward co-dominance of DENV-1 and DENV-4 over previously dominant DENV-2. By analyzing 135 new full-length DENV sequences, we found that introductions underlay the resurgence: DENV-1 clustered with viruses from Ecuador in 2014 rather than those previously seen in Nicaragua; DENV-3, which last circulated locally in 2014, grouped instead with Southeast Asia strains expanding into Florida and Cuba in 2022; and new DENV-4 strains clustered within a South America lineage spreading to Florida in 2022. In contrast, DENV-2 persisted from the formerly dominant Nicaragua clade. We posit that the resurgence emerged from travel after the COVID-19 pandemic and that the resultant intensifying hyperendemicity could affect future dengue immunity and severity.
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- 2024
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42. Predominance of Dengue Virus Serotype-1/Genotype-I in Eastern and Southeastern Ethiopia.
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Tsegaye, Mesfin Mengesha, Mekonnen, Adamu Tayachew, Gebretsion, Daniel Tsega, Gelanew, Tesfaye, Alemayehu, Dawit Hailu, Tefera, Dessalegn Abeje, Woldemichael, Tamirayehu Seyoum, Getaneh, Bethlehem Adnew, Abera, Eleni Kidane, Jebessa, Gadissa Gutema, Korkiso, Asefa Konde, Tessema, Mengistu Biru, Asfaw, Admikew Agunie, Temre, Yoseph Asrat, Wossen, Mesfin, Piantadosi, Anne, Zhu, Huachen, Abdissa, Alemseged, Mihret, Adane, and Mulu, Andargachew
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SEROTYPES , *DENGUE , *SEQUENCE analysis , *GENOTYPES , *DENGUE viruses - Abstract
We determined the dengue virus (DENV) serotypes and genotypes in archived serum samples that were collected during the 2014–2016 and 2021 dengue outbreaks in Dire Dawa City and the Somali region in Ethiopia. DENV serotype 1 (DENV-1) was predominant followed by DENV serotype 2 (DENV-2). Thirteen of the DENV-1 strains were assigned to Genotype-I, while the remaining two were found to be Genotype-III. All three DENV-2 strains were assigned the Cosmopolitan Genotype. The DENV strains responsible for the outbreaks are genetically closely related to the DENV strains that circulated in neighboring and Asian countries. The findings also showed continued local transmission of a monophyletic lineage and a co-circulation of DENV-1 and DENV-2 during the outbreaks. There is a need to strengthen DENV genomic surveillance capacity for the early detection of circulating serotypes, and prevent devastating consequences of future outbreaks due to the co-circulation of different serotypes. [ABSTRACT FROM AUTHOR]
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- 2024
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43. North–south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic.
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Miguel, Isaac, Feliz, Edwin P., Agramonte, Robinson, Martinez, Pedro V., Vergara, Carlos, Imbert, Yvonne, De la Cruz, Lucia, de Castro, Nurys, Cedano, Odalis, De la Paz, Yamilka, Fonseca, Vagner, Santiago, Gilberto A., Muñoz-Jordán, Jorge L., Peguero, Armando, Paulino-Ramírez, Robert, Grubaugh, Nathan D., de Filippis, Ana Maria Bispo, Alcantara, Luiz Carlos Junior, Rico, Jairo Mendez, and Lourenço, José
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DENGUE viruses , *EPIDEMIOLOGY , *VIRAL transmission , *SEROTYPES , *DENGUE - Abstract
Background: Dengue fever remains a significant public health challenge in tropical and subtropical regions, with its transmission dynamics being influenced by both environmental factors and human mobility. The Dominican Republic, a biodiversity hotspot in the Caribbean, has experienced recurrent dengue outbreaks, yet detailed understanding of the virus's transmission pathways and the impact of climatic factors remains limited. This study aims to elucidate the recent transmission dynamics of the dengue virus (DENV) in the Dominican Republic, utilizing a combination of genomic sequencing and epidemiological data analysis, alongside an examination of historical climate patterns. Methods: We conducted a comprehensive study involving the genomic sequencing of DENV samples collected from patients across different regions of the Dominican Republic over a two-year period. Phylogenetic analyses were performed to identify the circulation of DENV lineages and to trace transmission pathways. Epidemiological data were integrated to analyze trends in dengue incidence and distribution. Additionally, we integrated historical climate data spanning several decades to assess trends in temperature and their potential impact on DENV transmission potential. Results: Our results highlight a previously unknown north–south transmission pathway within the country, with the co-circulation of multiple virus lineages. Additionally, we examine the historical climate data, revealing long-term trends towards higher theoretical potential for dengue transmission due to rising temperatures. Conclusion: This multidisciplinary study reveals intricate patterns of dengue virus transmission in the Dominican Republic, characterized by the co-circulation of multiple DENV lineages and a novel transmission pathway. The observed correlation between rising temperatures and increased dengue transmission potential emphasizes the need for integrated climate-informed strategies in dengue control efforts. Our findings offer critical insights for public health authorities in the Dominican Republic and similar settings, guiding resource allocation and the development of preparedness strategies to mitigate the impacts of climate change on dengue transmission. [ABSTRACT FROM AUTHOR]
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- 2024
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44. A Comprehensive Statistical Analysis of Symptoms and Impact of Dengue Fever: A Case Study at University of Peshawar.
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Ali, Murad, Zaman, Qamruz, Noor, Mah, Ullah, Ahmad, Osama, Syed, Sahibzada, Nousheen, Khan, Shahid, and Ali, Mansab
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DENGUE , *SYMPTOMS , *SEROTYPES , *CHI-squared test - Abstract
This study conducted a comprehensive statistical analysis of the symptoms and impact of dengue fever, incorporating additional factors such as prevention awareness, disease control, aftereffects, disease stages, serotypes, recovery, and treatment. Data were gathered through questionnaires from 400 students across various departments at Peshawar University, representing both urban and rural areas. The data were processed using SPSS (Version 20) and analyzed using methods like odds ratio, chisquare, pie charts, and bar charts to examine the different symptoms and impacts of dengue fever in this study the findings revealed that approximately one-third of the respondents aged 18-30 had been affected by dengue fever. The results indicate a significant association between these two variables. Furthermore, the odds ratio of 0.5 suggests that respondents aged 18 to 25 are half as likely to isolate during dengue compared to those aged 26 to 35. The study identified common symptoms such as headache, flu-like symptoms, rash, joint and muscle pain, loss of appetite, abdominal pain, and bleeding from the gums. A majority (68.25%) considered dengue a serious illness, and 63.3% perceived it as more prevalent in urban areas. Additionally, the research indicated that a significant number of respondents were skeptical about the long-term effects of dengue, such as hair loss and alopecia, despite existing evidence suggesting these outcomes this study underscores the importance of understanding the prevalence and implications of dengue fever and emphasizes the need for heightened awareness and effective preventive measures. [ABSTRACT FROM AUTHOR]
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- 2024
45. Tendencias epidemiológicas del dengue en Latinoamérica: 2019-2024.
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Rodríguez Alfaro, Sergio Elihu, Méndez Martínez, Socorro, Guerrero Barrio, Sarahí, Ayón Aguilar, Jorge, García Flores, Máximo Alejandro, and Santos López, Gerardo
- Abstract
OBJECTIVE: To describe the epidemiological behavior of dengue and its serotypes in Mexico and Latin America. MATERIALS AND METHODS: A descriptive analysis was conducted using data from the Information Platform for Health of the Americas (PLISA) and national and international epidemiological bulletins from January 2019 to January 2024. Confirmed, severe and non-severe cases, cases with and without warning signs, fatal cases, simultaneous circulation, serotypes, and mortality rates were identified. RESULTS: A total of 13,967,156 dengue cases were registered in Latin America during the study period. Of these, 42% were laboratory-confirmed. There were 7,600,985 non-severe cases, 47,700 severe cases, and 6278 fatal cases. The countries with the highest number of severe cases were Brazil, Honduras, Colombia, and Mexico. The most frequent serotypes were 1 and 2. An increase in the simultaneous circulation of the four serotypes was observed, as well as an increase in serotype 3 in Mexico. CONCLUSIONS: In Latin America, the number of dengue cases increased, but not the severity, mortality or lethality. The simultaneous circulation of multiple serotypes poses a challenge for prevention and control efforts. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Within-host models unravelling the dynamics of dengue reinfections.
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Anam, Vizda, Guerrero, Bruno V., Srivastav, Akhil Kumar, Stollenwerk, Nico, and Aguiar, Maíra
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SEROTYPES , *DENGUE , *INFECTION , *IMMUNOLOGY , *PREVENTIVE medicine - Abstract
Caused by four serotypes, dengue fever is a major public health concern worldwide. Current modeling efforts have mostly focused on primary and heterologous secondary infections, assuming that lifelong immunity prevents reinfections by the same serotype. However, recent findings challenge this assumption, prompting a reevaluation of dengue immunity dynamics. In this study, we develop a within-host modeling framework to explore different scenarios of dengue infections. Unlike previous studies, we go beyond a deterministic framework, considering individual immunological variability. Both deterministic and stochastic models are calibrated using empirical data on viral load and antibody (IgM and IgG) concentrations for all dengue serotypes, incorporating confidence intervals derived from stochastic realizations. With good agreement between the mean of the stochastic realizations and the mean field solution for each model, our approach not only successfully captures primary and heterologous secondary infection dynamics facilitated by antibody-dependent enhancement (ADE) but also provides, for the first time, insights into homotypic reinfection dynamics. Our study discusses the relevance of homotypic reinfections in dengue transmission at the population level, highlighting potential implications for disease prevention and control strategies. [ABSTRACT FROM AUTHOR]
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- 2024
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47. The Development of New Primer Sets for the Amplification and Sequencing of the Envelope Gene of All Dengue Virus Serotypes.
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Fraenkel, Stefania, Nabeshima, Takeshi, Xayavong, Dalouny, Nguyen, Thi Thanh Ngan, Xu, Qiang, Kapandji, Merveille, Yamao, Kano, Balingit, Jean Claude, Pandey, Basu Dev, Morita, Kouichi, Hasebe, Futoshi, Ngwe Tun, Mya Myat, and Takamatsu, Yuki
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DENGUE viruses ,SEROTYPES ,VIRAL genes ,GENES ,DENGUE ,GENE amplification ,FOOT & mouth disease - Abstract
Dengue virus (DENV) poses a significant threat to global health, infecting approximately 390 million people annually. This virus comprises four serotypes capable of causing severe disease. Genetic analyses are crucial for understanding the epidemiology, evolution, and spread of DENV. Although previous studies have focused on the envelope protein-coding (E) gene, only a few primers can efficiently detect and amplify the viral genes from multiple endemic countries simultaneously. In this study, we designed degenerate primer pairs for each DENV serotype to amplify and sequence the entire E gene, using globally representative sequences for each serotype. These primers were validated using DENV isolates from various Asian countries and demonstrated broad-spectrum detection capabilities and high-quality sequences. The primers provide effective tools for genetic analysis in the regions affected by dengue, aiding strain identification and epidemiological studies during outbreaks. [ABSTRACT FROM AUTHOR]
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- 2024
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48. Retrospective Analysis of Severe Dengue by Dengue Virus Serotypes in a Population with Social Security, Mexico 2023.
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Hernández Bautista, Porfirio Felipe, Cabrera Gaytán, David Alejandro, Santacruz Tinoco, Clara Esperanza, Vallejos Parás, Alfonso, Alvarado Yaah, Julio Elias, Martínez Miguel, Bernardo, Anguiano Hernández, Yu Mei, Arriaga Nieto, Lumumba, Moctezuma Paz, Alejandro, Jaimes Betancourt, Leticia, Pérez Andrade, Yadira, Orozco, Oscar Cruz, Valle Alvarado, Gabriel, and Rivera Mahey, Mónica Grisel
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DENGUE , *SOCIAL security , *DENGUE viruses , *SEROTYPES , *RETROSPECTIVE studies , *BIVARIATE analysis , *AGE groups , *FENITROTHION - Abstract
Background: Risk factors for severe dengue manifestations have been attributed to various factors, including specific serotypes, sex, and age. Mexico has seen the re-emergence of DENV-3, which has not circulated in a decade. Objective: To describe dengue serotypes by age, sex, and their association with disease severity in dengue-positive serum samples from epidemiological surveillance system units. Materials and Methods: A descriptive analysis was conducted to evaluate the frequency of dengue severity by sex, age, disease quarter, geographical location, and dengue virus serotypes. The study was conducted using laboratory samples from confirmed dengue cases through RT-qPCR from the epidemiological surveillance laboratory network of the Mexican Social Security Institute, Mexico. Simple frequencies and proportions were calculated using the z-test for proportional differences between groups. Bivariate analysis with adjusted Chi2 was performed, and binary logistic regression models were constructed using the forward Wald method considering the model's predictive capacity. The measure of association was the odds ratio, with 95% confidence intervals. Statistical significance was set to an alpha level of <0.05. Results: In 2023, 10,441 samples were processed for dengue RT-qPCR at the IMSS, with a predominance of serotype DENV-3 (64.4%). The samples were mostly from women (52.0%) and outpatient cases (63.3%). The distribution of dengue severity showed significant variations by age, with a lower proportion of severe cases in young children and a higher proportion in the 5- to 14-year-old group. Hospitalizations increased significantly with severity. Warm regions had more cases overall and severity. Cases were most frequent from July to September. While DENV-2 was associated with severity, DENV-4 was not. Binary regression identified higher risk in women, age extremes, and DENV-2, with an overall predictive model of 58.5%. Conclusions: Women, age groups at the extremes of life, and the DENV-2 serotype presented severe risk of dengue in a population with social security in Mexico during 2023. [ABSTRACT FROM AUTHOR]
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- 2024
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49. Molecular and Entomological Characterization of 2023 Dengue Outbreak in Dhading District, Central Nepal.
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Rimal, Sandesh, Shrestha, Sabin, Paudel, Sunita Wagle, Shah, Yogendra, Bhandari, Govinda, Pandey, Kishor, Kharbuja, Anjana, Kapandji, Merveille, Gautam, Ishan, Bhujel, Rajshree, Takamatsu, Yuki, Bhandari, Rudramani, Klungthong, Chonticha, Shrestha, Sanjaya Kumar, Fernandez, Stefan, Malavige, Gathsaurie Neelika, Pandey, Basu Dev, Urano, Takeshi, Morita, Kouichi, and Ngwe Tun, Mya Myat
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DENGUE , *MOSQUITO control , *DENGUE viruses , *AEDES , *ABDOMINAL pain , *SEROTYPES , *BLOOD sampling - Abstract
In 2023, Nepal faced its second largest dengue outbreak ever, following a record-breaking number of dengue cases in 2022, characterized by the expansion of infections into areas of higher altitudes. However, the characteristics of the 2023 circulating dengue virus (DENV) and the vector density remain poorly understood. Therefore, we performed DENV serotyping, clinical and laboratory assessment, and entomological analysis of the 2023 outbreak in central Nepal. A total of 396 fever cases in Dhading hospital suspected of being DENV positive were enrolled, and blood samples were collected and tested by different techniques including PCR. Of these, 278 (70.2%) had confirmed DENV infection. Multiple serotypes (DENV-1, -2, and -3) were detected. DENV-2 (97.5%) re-emerged after six years in Dhading while DENV-3 was identified for the first time. Dengue inpatients had significantly higher frequency of anorexia, myalgia, rash, diarrhea, nausea, vomiting, abdominal pain, and thrombocytopenia (p < 0.05). In this area, Aedes mosquitoes largely predominated (90.7%) with the majority being A. aegypti (60.7%). We also found high levels of Aedes index (20.0%) and container index (16.7%). We confirmed multiple DENV serotype circulation with serotype re-emergence and new serotype introduction, and high vector density in 2023. These findings call for the urgent initiation and scaling up of DENV molecular surveillance in human and mosquito populations for dengue control and prevention in Nepal. [ABSTRACT FROM AUTHOR]
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- 2024
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50. Dengue virus serotypes and related factors in children with dengue hemorrhagic fever in Southern Vietnam.
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Khai Quang Tran, Van Hung Pham, Trieu Thi Ngoc Tran, Chi Thao Mai, Tho Kieu Anh Pham, Toan Hoang Ngo, Huy Bui Thai Nguyen, Cuong Manh Nguyen, Hieu Van Duong, and Phuong Minh Nguyen
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DENGUE hemorrhagic fever , *DENGUE viruses , *COVID-19 pandemic , *SEROTYPES , *CHILDREN'S hospitals , *POLYMERASE chain reaction - Abstract
Introduction: After the Coronavirus Disease 2019 pandemic, a high number of cases and severe dengue in children were reported in some provinces in the south of Vietnam. This study aimed to determine the distribution of dengue virus serotypes and their correlation with demographic factors, disease severity, clinical manifestations, and laboratory findings. Methodology: This study employed a cross-sectional design. Ninety-six dengue-infected children admitted to Can Tho Children's Hospital between October 2022 and March 2023 were included. Confirmation of dengue infection was achieved through the real-time polymerase chain reaction (RT-PCR). Results: Among the identified serotypes, DENV-2 accounted for the highest proportion (71.87%), followed by DENV-1 (23.96%), and DENV-4 (4.17%). DENV-3 was not detected. No significant demographic, disease severity, or laboratory differences were observed among the identified dengue serotypes. However, DENV-2 was associated with a higher occurrence of mucous membrane hemorrhages and gastrointestinal bleeding compared to other serotypes. Conclusions: Although DENV-2 was the most prevalent serotype responsible for dengue in children in southern Vietnam, it did not lead to more severe cases compared to other serotypes. This finding is crucial for evaluating the illness's prognosis. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
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