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Increasing exposure to unfavorable temperatures and water deficit imposes major constraints on most crops worldwide. Despite several studies regarding coffee responses to abiotic stresses, transcriptome modulation due to simultaneous stresses remains poorly understood. This study unravels transcriptomic responses under the combined action of drought and temperature in leaves from the two most traded species: Coffea canephora cv. Conilon Clone 153 (CL153) and C. arabica cv. Icatu. Substantial transcriptomic changes were found, especially in response to the combination of stresses that cannot be explained by an additive effect. A large number of genes were involved in stress responses, with photosynthesis and other physiologically related genes usually being negatively affected. In both genotypes, genes encoding for protective proteins, such as dehydrins and heat shock proteins, were positively regulated. Transcription factors (TFs), including MADS-box genes, were down-regulated, although responses were genotype-dependent. In contrast to Icatu, only a few drought- and heat-responsive DEGs were recorded in CL153, which also reacted more significantly in terms of the number of DEGs and enriched GO terms, suggesting a high ability to cope with stresses. This research provides novel insights into the molecular mechanisms underlying leaf Coffea responses to drought and heat, revealing their influence on gene expression.

Growing water restrictions associated with climate changes constitute daunting challenges to crop performance. This study unveils the impacts of moderate (MWD) or severe (SWD) water deficit, and their interaction with air [CO2], on the photosynthetic apparatus of Coffea canephora Pierre ex A. Froehner cv. Conilon Clone 153 (CL153) and Coffea arabica L. cv. Icatu. Seven year-old potted plants grown under 380 (aCO2) or 700 μl l -1 (eCO2) [CO2] gradually reached predawn water potentials between -1.6 and -2.1 MPa (MWD), and below -3.5 MPa (SWD). Under drought, stomata closure was chiefly related to abscisic acid (ABA) rise. Increasing drought severity progressively affected gas exchange and fluorescence parameters in both genotypes, with non-stomatal limitations becoming gradually dominating, especially regarding the photochemical and biochemical components of CL153 SWD plants. In contrast, Icatu plants were highly tolerant to SWD, with minor, if any, negative impacts on the potential photosynthetic functioning and components (e.g., Amax, Fv/Fm, electron carriers, photosystems (PSs) and ribulose-1,5-bisphosphate carboxylase oxygenase (RuBisCO) activities). Besides, drought-stressed Icatu plants displayed increased abundance of a large set of proteins associated with the photosynthetic apparatus (PSs, light-harvesting complexes, cyclic electron flow, RuBisCO activase) regardless of [CO2]. Single eCO2 did not promote stomatal and photosynthetic down-regulation in both genotypes. Instead, eCO2 increased photosynthetic performance, moderately reinforced photochemical (PSs activity, electron carriers) and biochemical (RuBisCO, ribulose-5-phosphate kinase) components, whereas photoprotective mechanisms and protein abundance remained mostly unaffected. In both genotypes, under MWD, eCO2 superimposition delayed stress severity and promoted photosynthetic functioning with lower energy dissipation and PSII impacts, whereas stomatal closure was decoupled from increases in ABA. In SWD plants, most impacts on the photosynthetic performance were reduced by eCO2, especially in the moderately drought affected CL153 genotype, although maintaining RuBisCO as the most sensitive component, deserving special breeder's attention to improve coffee sustainability under future climate scenarios., (© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permission@oup.com.)

This document is an editorial from the International Journal of Molecular Sciences titled "Plant Responses to Climate Change." It discusses the risks that climate change poses to the natural environment and agriculture, particularly in relation to abiotic stresses such as extreme temperatures and drought. The editorial highlights the importance of scientific research in understanding the molecular mechanisms of plant responses to these stresses and improving crop tolerance. The document also provides a list of ten research contributions from various countries, covering topics such as autophagy-related genes, the circadian clock, drought and elevated CO2 effects, and salt tolerance in different plant species. The editorial concludes by emphasizing the need for further research on the interactions between abiotic stresses and their impacts on different plant components, as well as the potential of emerging technologies like genome editing and artificial intelligence in supporting sustainable agriculture. [Extracted from the article]

Cowpea (Vigna unguiculata L. Walp) is a protein‐rich grain legume with high adaptability to heat and drought and can be consumed during all stages of the plant development. Drought is a severe environmental stress with major impacts on plant development and productivity. This study main objective was to understand the effects of drought stress on polyphenolic content and antioxidant capacity in plant tissue at different stages of cowpea development. Four cowpea genotypes grown until the anthesis under well‐irrigate conditions and then were submitted to two watering regimens (0% and 75% of field capacity) for one week. Immature pods and seeds and dry seeds were collected, and polyphenolic content and antioxidant capacity were evaluated by spectrophotometry. In general, differences between genotypes, plant growth stage and treatments were observed. A variation of phenolic content and antioxidant capacity has been detected in all cowpea genotypes and plant tissues at different development stages. Immature pods showed the highest values in all the parameters evaluated, while the dry seed presented the lowest values. The samples submitted to drought stress showed a slight decrease in all the parameters evaluated compared to control samples being this decrease only significant in some parameters and growth stages. This study shows that drought stress did not significantly influence the quality of cowpea through phenolic content and antioxidant capacity. [ABSTRACT FROM AUTHOR]

This study unveils the single and combined drought and heat impacts on the photosynthetic performance of Coffea arabica cv. Icatu and C. canephora cv. Conilon Clone 153 (CL153). Well-watered (WW) potted plants were gradually submitted to severe water deficit (SWD) along 20 days under adequate temperature (25/20°C, day/night), and thereafter exposed to a gradual temperature rise up to 42/30°C, followed by a 14-day water and temperature recovery. Single drought affected all gas exchanges (including Amax) and most fluorescence parameters in both genotypes. However, Icatu maintained Fv/Fm and RuBisCO activity, and reinforced electron transport rates, carrier contents, and proton gradient regulation (PGR5) and chloroplast NADH dehydrogenase-like (NDH) complex proteins abundance. This suggested negligible non-stomatal limitations of photosynthesis that were accompanied by a triggering of protective cyclic electron transport (CEF) involving both photosystems (PSs). These findings contrasted with declines in RuBisCO and PSs activities, and cytochromes (b559 , f , b563) contents in CL153. Remarkable heat tolerance in potential photosynthetic functioning was detected in WW plants of both genotypes (up to 37/28°C or 39/30°C), likely associated with CEF in Icatu. Yet, at 42/30°C the tolerance limit was exceeded. Reduced Amax and increased Ci values reflected non-stomatal limitations of photosynthesis, agreeing with impairments in energy capture (F0 rise), PSII photochemical efficiency, and RuBisCO and Ru5PK activities. In contrast to PSs activities and electron carrier contents, enzyme activities were highly heat sensitive. Until 37/28°C, stresses interaction was largely absent, and drought played the major role in constraining photosynthesis functioning. Harsher conditions (SWD, 42/30°C) exacerbated impairments to PSs, enzymes, and electron carriers, but uncontrolled energy dissipation was mitigated by photoprotective mechanisms. Most parameters recovered fully between 4 and 14 days after stress relief in both genotypes, although some aftereffects persisted in SWD plants. Icatu was more drought tolerant, with WW and SWD plants usually showing a faster and/or greater recovery than CL153. Heat affected both genotypes mostly at 42/30°C, especially in SWD and Icatu plants. Overall, photochemical components were highly tolerant to heat and to stress interaction in contrast to enzymes that deserve special attention by breeding programs to increase coffee sustainability in climate change scenarios. [ABSTRACT FROM AUTHOR]

The understanding of acclimation strategies to low temperature and water availability is decisive to ensure coffee crop sustainability, since these environmental conditions determine the suitability of cultivation areas. In this context, the impacts of single and combined exposure to drought and cold were evaluated in three genotypes of the two major cropped species, Coffea arabica cv. Icatu, Coffea canephora cv. Apoatã, and the hybrid Obatã. Crucial traits of plant resilience to environmental stresses have been examined: photosynthesis, lipoperoxidation and the antioxidant response. Drought and/or cold promoted leaf dehydration, which was accompanied by stomatal and mesophyll limitations that impaired leaf C-assimilation in all genotypes. However, Icatu showed a lower impact upon stress exposure and a faster and complete photosynthetic recovery. Although lipoperoxidation was increased by drought (Icatu) and cold (all genotypes), it was greatly reduced by stress interaction, especially in Icatu. In fact, although the antioxidative system was reinforced under single drought and cold exposure (e.g., activity of enzymes as Cu,Zn-superoxide dismutase, ascorbate peroxidase, APX, glutathione reductase and catalase, CAT), the stronger increases were observed upon the simultaneous exposure to both stresses, which was accompanied with a transcriptional response of some genes, namely related to APX. Complementary, non-enzyme antioxidant molecules were promoted mostly by cold and the stress interaction, including α-tocopherol (in C. arabica plants), ascorbate (ASC), zeaxanthin, and phenolic compounds (all genotypes). In general, drought promoted antioxidant enzymes activity, whereas cold enhanced the synthesis of both enzyme and non-enzyme antioxidants, the latter likely related to a higher need of antioxidative capability when enzyme reactions were probably quite repressed by low temperature. Icatu showed the wider antioxidative capability, with the triggering of all studied antioxidative molecules by drought (except CAT), cold, and, particularly, stress interaction (except ASC), revealing a clear stress cross-tolerance. This justified the lower impacts on membrane lipoperoxidation and photosynthetic capacity under stress interaction conditions, related to a better ROS control. These findings are also relevant to coffee water management, showing that watering in the cold season should be largely avoided. [ABSTRACT FROM AUTHOR]

Drought is a major threat to coffee, compromising the quality and quantity of its production. We have analyzed the core proteome of 18 Coffea canephora cv. Conilon Clone 153 and C. arabica cv. Icatu plants and assessed their responses to moderate (MWD) and severe (SWD) water deficits. Label-free quantitative shotgun proteomics identified 3000 proteins in both genotypes, but less than 0.8% contributed to ca. 20% of proteome biomass. Proteomic changes were dependent on the severity of drought, being stronger under SWD and with an enrolment of different proteins, functions, and pathways than under MWD. The two genotypes displayed stress-responsive proteins under SWD, but only C. arabica showed a higher abundance of proteins involved in antioxidant detoxification activities. Overall, the impact of MWD was minor in the two genotypes, contrary to previous studies. In contrast, an extensive proteomic response was found under SWD, with C. arabica having a greater potential for acclimation/resilience than C. canephora. This is likely supported by a wider antioxidative response and an ability to repair photosynthetic structures, being crucial to develop new elite genotypes that assure coffee supply under water scarcity levels. [ABSTRACT FROM AUTHOR]

The objective of this study is to evaluate the impact of a new parameterization of drop-drop collision outcomes based on the relationship between Weber number and drop diameter ratios on the dynamical simulation of raindrop size distributions. Results of the simulations with the new parameterization are compared with those of the classical parameterizations. Comparison with previous results indicates on average an increase of 70% in the drop number concentration and a 15% decrease in rain intensity for the equilibrium drop size distribution (DSD). Furthermore, the drop bounce process is parameterized as a function of drop size based on laboratory experiments for the first time in a microphysical model. Numerical results indicate that drop bounce has a strong influence on the equilibrium DSD, in particular for very small drops (<0.5 mm), leading to an increase of up to 150% in the small drop number concentration (left-hand side of the DSD) when compared to previous modeling results without accounting for bounce effects. [ABSTRACT FROM AUTHOR]

Water scarcity is the most significant factor limiting coffee production, although some cultivars can still have important drought tolerance. This study analyzed leaf transcriptomes of two coffee cultivars with contrasting physiological responses, Coffea canephora cv. CL153 and Coffea. arabica cv. Icatu, subjected to moderate (MWD) or severe water deficits (SWD). We found that MWD had a low impact compared with SWD, where 10% of all genes in Icatu and 17% in CL153 reacted to drought, being mainly down-regulated upon stress. Drought triggered a genotype-specific response involving the up-regulation of reticuline oxidase genes in CL153 and heat shock proteins in Icatu. Responsiveness to drought also included desiccation protectant genes, but primarily, aspartic proteases, especially in CL153. A total of 83 Transcription Factors were found engaged in response to drought, mainly up-regulated, especially under SWD. Together with the enrollment of 49 phosphatases and 272 protein kinases, results suggest the involvement of ABA-signaling processes in drought acclimation. The integration of these findings with complementing physiological and biochemical studies reveals that both genotypes are more resilient to moderate drought than previously thought and suggests the existence of post-transcriptional mechanisms modulating the response to drought. [ABSTRACT FROM AUTHOR]

Summary: Resiliency and effectiveness in water resources management of drought is strongly depend on advanced knowledge of drought onset, duration and severity. The motivation of this work is to extend the lead time of operational drought forecasts. The research strategy is to explore the predictability of drought severity from space–time varying indices of large-scale climate phenomena relevant to regional hydrometeorology (e.g. ENSO) by integrating linear and non-linear statistical data models, specifically self-organizing maps (SOM) and multivariate linear regression analysis. The methodology is demonstrated through the step-by-step development of a model to forecast monthly spatial patterns of the standard precipitation index (SPI) within the Murray-Darling Basin (MDB) in Australia up to 12 months in advance. First, the rationale for the physical hypothesis and the exploratory data analysis including principal components, wavelet and partial mutual information analysis to identify and select predictor variables are presented. The focus is on spatial datasets of precipitation, sea surface temperature anomaly (SSTA) patterns over the Indian and Pacific Oceans, temporal and spatial gradients of outgoing longwave radiation (OLR) in the Pacific Ocean, and the far western Pacific wind-stress anomaly. Second, the process of model construction, calibration and evaluation is described. The experimental forecasts show that there is ample opportunity to increase the lead time of drought forecasts for decision support using parsimonious data models that capture the governing climate processes at regional scale. OLR gradients proved to be dispensable predictors, whereas SPI-based predictors appear to control predictability when the SSTA in the region [87.5°N–87.5°S; 27.5°E–67.5°W] and eastward wind-stress anomalies in the region [4°N–4°S; 130°E–160°E) are small, respectively, ±1° and ±0.01dyne/cm2, that is when ENSO activity is weak. The areal averaged 12-month lead-time forecasts of SPI in the MDB explain up to 60% of the variance in the observations (r >0.7). Based on a threshold SPI of −0.5 for severe drought at the regional scale and for a nominal 12-month lead time, the forecast of the timing of onset is within 0–2 months of the actual threshold being met by the observations, thus effectively a 10-month lead time forecast at a minimum. Spatial analysis suggests that forecast errors can be attributed in part to a mismatch between the spatial heterogeneity of rainfall and raingauge density in the observational network. Forecast uncertainty on the other hand appears associated with the number of redundant predictors used in the forecast model. [Copyright &y& Elsevier]

Climate change scenarios pose major threats to many crops worldwide, including coffee. We explored the primary metabolite responses in two Coffea genotypes, C. canephora cv. Conilon Clone 153 and C. arabica cv. Icatu, grown at normal (aCO2) or elevated (eCO2) CO2 concentrations of 380 or 700 ppm, respectively, under well-watered (WW), moderate (MWD), or severe (SWD) water deficit conditions, in order to assess coffee responses to drought and how eCO2 can influence such responses. Primary metabolites were analyzed with a gas chromatography time-of-flight mass spectrometry metabolomics platform (GC-TOF-MS). A total of 48 primary metabolites were identified in both genotypes (23 amino acids and derivatives, 10 organic acids, 11 sugars, and 4 other metabolites), with differences recorded in both genotypes. Increased metabolite levels were observed in CL153 plants under single and combined conditions of aCO2 and drought (MWD and SWD), as opposed to the observed decreased levels under eCO2 in both drought conditions. In contrast, Icatu showed minor differences under MWD, and increased levels (especially amino acids) only under SWD at both CO2 concentration conditions, although with a tendency towards greater increases under eCO2. Altogether, CL153 demonstrated large impact under MWD, and seemed not to benefit from eCO2 in either MWD and SWD, in contrast with Icatu. [ABSTRACT FROM AUTHOR]

Canavalia rosea (bay bean), distributing in coastal areas or islands in tropical and subtropical regions, is an extremophile halophyte with good adaptability to seawater and drought. Late embryogenesis abundant (LEA) proteins typically accumulate in response to various abiotic stresses, including dehydration, salinity, high temperature, and cold, or during the late stage of seed development. Abscisic acid-, stress-, and ripening-induced (ASR) genes are stress and developmentally regulated plant-specific genes. In this study, we reported the first comprehensive survey of the LEA and ASR gene superfamily in C. rosea. A total of 84 CrLEAs and three CrASRs were identified in C. rosea and classified into nine groups. All CrLEAs and CrASRs harbored the conserved motif for their family proteins. Our results revealed that the CrLEA genes were widely distributed in different chromosomes, and all of the CrLEA/CrASR genes showed wide expression features in different tissues in C. rosea plants. Additionally, we introduced 10 genes from different groups into yeast to assess the functions of the CrLEAs/CrASRs. These results contribute to our understanding of LEA/ASR genes from halophytes and provide robust candidate genes for functional investigations in plant species adapted to extreme environments. [ABSTRACT FROM AUTHOR]

As drought threatens crop productivity it is crucial to characterize the defense mechanisms against water deficit and unveil their interaction with the expected rise in the air [CO 2 ]. For that, plants of Coffea canephora cv. Conilon Clone 153 (CL153) and C. arabica cv. Icatu grown under 380 (aCO 2) or 700 μL L−1 (eCO 2) were exposed to moderate (MWD) and severe (SWD) water deficits. Responses were characterized through the activity and/or abundance of a selected set of proteins associated with antioxidative (e.g., Violaxanthin de-epoxidase, Superoxide dismutase, Ascorbate peroxidases, Monodehydroascorbate reductase), energy/sugar (e.g., Ferredoxin-NADP reductase, NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, sucrose synthase, mannose-6-phosphate isomerase, Enolase), and lipid (Lineolate 13S-lipoxygenase) processes, as well as with other antioxidative (ascorbate) and protective (HSP70) molecules. MWD caused small changes in both genotypes regardless of [CO 2 ] level while under the single imposition to SWD, only Icatu showed a global reinforcement of most studied proteins supporting its tolerance to drought. eCO 2 alone did not promote remarkable changes but strengthened a robust multi-response under SWD, even supporting the reversion of impacts already observed by CL153 at aCO 2. In the context of climate changes where water constraints and [CO 2 ] levels are expected to increase, these results highlight why eCO 2 might have an important role in improving drought tolerance in Coffea species. [ABSTRACT FROM AUTHOR]

• Physiological and metabolic profiling (GC-TOF-MS) and PLS-DA reveals drought tolerance responses. • Acclimation included metabolite, photoprotective and thermal dissipation mechanisms. • Tolerant A116 genotype showed accumulation in 13 of the 14 most responsive metabolites. • Sucrose, fucose, urea, alanine and putrescine were exclusively increased in A116. • Exploring Mozambique wide cowpea genetic variability to support breeding programs. Drought threatens the world's food production, particularly in Sub Saharan Africa low external input and rain fed agricultural systems, where cowpea (Vigna unguiculata (L.) Walp.) is an important food crop. In the context of growing concerns regarding climate changes implications on water availability, this study aimed at 1) to evaluate the drought responses in cowpea landraces with contrasting drought tolerance levels (A55 – high sensitivity; A80 - mild sensitivity; A116 - tolerant), 2) using an integrated physiological (leaf gas exchanges; chlorophyll a fluorescence) and biochemical (photoprotective pigments; RuBisCO activity; primary metabolite profiling) analysis to identify drought tolerance probes, in plants submitted to three water availability levels (well-watered, WW; mild drought, MD; severe drought, SD). A116 plants maintained a better water status under drought, what could justify the higher P n and P nmax values in MD, as well as higher photochemical use of energy (reflected in the photochemical quenching (q L) and in the quantum yield of non-cyclic electron transport (Y (II))), and the lower need of photoprotective thermal dissipation mechanisms (given by the non-photochemical quenching (q N), and the quantum yield of regulated energy dissipation at photosystem PSII (Y (NPQ))), in MD and SD plants. Greater declines of net (P n) and potential (P nmax) photosynthesis were observed in A55 plants, which frequently showed significant impacts already under MD conditions in most parameters, whereas A80 usually displayed and intermediate behaviour. Still, even A55 showed some acclimation response, regarding photoprotective mechanisms associated with high contents of zeaxanthin, lutein, and carotenes, and high Y (NPQ) , and q N values, supporting the absence of an increase in the non-regulated energy dissipation at PSII (Y (NO) did not increased) even in SD plants. Additionally, A55 was not significantly affected in RuBisCO activity, which showed to be quite resilient in cowpea. A primary metabolite profiling, complemented with a partial least square discrimination analysis (PLS-DA), allowed a better separation of A116 and A55 plants according to their degree of drought tolerance. In response to drought, A116 showed the greatest accumulation of most responsive metabolites, 14 in total, with sucrose, fucose, urea, alanine and putrescine being exclusively increased in this genotype, suggesting that they can be candidates as drought tolerance proxies. Other compounds, as proline, valine, isoleucine (among amino acids), and rhamnose and raffinose (among sugars) showed close increase patterns across landraces, thus they would be involved in the common drought response of cowpea plants. This pioneer approach to characterize Africa's and Central Mozambique highly diverse cowpea germplasm, highlights the advantages of an integrated physiological and biochemical analysis, to identify response mechanisms and potential probes for drought tolerance in cowpea, aiming at to support selection and breeding strategies to obtain high yield and drought tolerant elite varieties. [ABSTRACT FROM AUTHOR]