27 results on '"Charles H. Cannon"'
Search Results
2. Is speciation an unrelenting march to reproductive isolation?
- Author
-
Charles H. Cannon
- Subjects
Range (biology) ,Evolutionary biology ,Genetic algorithm ,Genetics ,Endangered species ,Morphology (biology) ,Reproductive isolation ,Biology ,Adaptation ,Clade ,Ecology, Evolution, Behavior and Systematics ,Molecular ecology - Abstract
Speciation is often portrayed as an "incomplete" or "incipient" process if two groups of organisms, technically distinguishable either by morphology or genetics, can exchange genes. The ultimate outcome of diversification, given this perspective, is complete reproductive isolation. But an increasing amount of evidence suggests that speciation is rarely complete and inter-fertility between different taxonomically accepted species is consistently maintained. In this issue of Molecular Ecology, Linan et al. (2021) provide results that bridge evolutionary processes from populations to phylogenies that indicate suites of closely related tree species in the Mascarene Islands actively exchange genes, evolving as a nested set of syngameons with a hierarchical pattern of interfertility. The deep insight into diversification provided by this study is particularly powerful because of the genomic scale of the data and the complete taxonomic sampling of an island clade evolving in situ. The prevalence of syngameon dynamics in a broad range of organisms indicates that we should adopt a fluid and comprehensive approach to defining evolutionary units for conservation and research. We should move beyond focusing on single endangered species in evolutionary and ecological isolation from other species but consider the entire network of potentially interfertile species and the potential for future adaptation and innovation, particularly in a human dominated world.
- Published
- 2021
- Full Text
- View/download PDF
3. Asking half the question in explaining tropical diversity
- Author
-
Charles H. Cannon and Manuel Lerdau
- Subjects
Gene Flow ,Hybridization, Genetic ,Ecology, Evolution, Behavior and Systematics - Published
- 2021
4. Application of remote sensing technology to estimate productivity and assess phylogenetic heritability
- Author
-
Bryant C. Scharenbroch, Ashley Tuffin, Mary-Claire Glasenhardt, Charles H. Cannon, Andrew L. Hipp, C. Lane Scher, and Nisa Karimi
- Subjects
0106 biological sciences ,0301 basic medicine ,Application Article ,productivity ,Plant Science ,Ecological succession ,Biology ,phylogeny ,010603 evolutionary biology ,01 natural sciences ,Normalized Difference Vegetation Index ,remote sensing ,03 medical and health sciences ,Application Articles ,Productivity ,Ecology, Evolution, Behavior and Systematics ,Remote sensing ,Biomass (ecology) ,biomass ,Community ,prairie ,Plant community ,Vegetation ,Phylogenetic diversity ,030104 developmental biology ,phylogenetic diversity - Abstract
Premise Measuring plant productivity is critical to understanding complex community interactions. Many traditional methods for estimating productivity, such as direct measurements of biomass and cover, are resource intensive, and remote sensing techniques are emerging as viable alternatives. Methods We explore drone-based remote sensing tools to estimate productivity in a tallgrass prairie restoration experiment and evaluate their ability to predict direct measures of productivity. We apply these various productivity measures to trace the evolution of plant productivity and the traits underlying it. Results The correlation between remote sensing data and direct measurements of productivity varies depending on vegetation diversity, but the volume of vegetation estimated from drone-based photogrammetry is among the best predictors of biomass and cover regardless of community composition. The commonly used normalized difference vegetation index (NDVI) is a less accurate predictor of biomass and cover than other equally accessible vegetation indices. We found that the traits most strongly correlated with productivity have lower phylogenetic signal, reflecting the fact that high productivity is convergent across the phylogeny of prairie species. This history of trait convergence connects phylogenetic diversity to plant community assembly and succession. Discussion Our study demonstrates (1) the importance of considering phylogenetic diversity when setting management goals in a threatened North American grassland ecosystem and (2) the utility of remote sensing as a complement to ground measurements of grassland productivity for both applied and fundamental questions.
- Published
- 2020
- Full Text
- View/download PDF
5. Botanic gardens should lead the way to create a 'Garden Earth' in the Anthropocene
- Author
-
Chai-Shian Kua and Charles H. Cannon
- Subjects
0106 biological sciences ,0301 basic medicine ,In situ conservation ,Public infrastructure ,Resource (biology) ,Endangered species ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Article ,03 medical and health sciences ,Anthropocene ,lcsh:Botany ,Botanical garden ,lcsh:QH301-705.5 ,Environmental planning ,Ecology, Evolution, Behavior and Systematics ,In-situ conservation ,Ecology ,Green infrastructure ,Ex-situ conservation ,lcsh:QK1-989 ,Botanic garden ,030104 developmental biology ,lcsh:Biology (General) ,Threatened species - Abstract
The strength and expertise that botanic gardens bring to conservation are based on their detailed knowledge and understanding of the care, management, and biology of a diversity of plant species. This emphasis on the organism has led to many ex-situ and in-situ conservation programs aimed at protecting endangered species, restoring threatened populations, and establishing living plant and seed collections of endangered species. In China, the scale and pace of change in land and resource use, often leading to environmental degradation, has created a strong emphasis on improving environmental conditions. If done properly, being “green” can be a surprisingly complex issue, because it should encompass and exploit the whole of plant diversity and function. Unfortunately, ‘green’ often includes a small portion of this whole. Earth's rich plant diversity presents considerable opportunity but requires expertise and knowledge for stable and beneficial management. With the dawning of the Anthropocene, we should strive to live on a “Garden Earth”, where we design and manage our environments, both built and natural, to create a healthy, beneficial living landscape for people and other organisms. The staff of botanic gardens worldwide and the living collections they maintain embody the best examples of sustainable, beautiful, and beneficial environments that thrive on plant diversity. This expertise should be a fundamental resource for agencies in all sectors responsible for managing and designing “green” infrastructure. Botanic gardens should actively engage and contribute to these opportunities, from large public infrastructure projects to small private conservation efforts. Here, we discuss several ongoing conservation efforts, primarily in China, and attempt to identify areas where botanic gardens could make a significant and meaningful difference. Keywords: Green infrastructure, Botanic garden, Ex-situ conservation, In-situ conservation, Botanical garden
- Published
- 2017
- Full Text
- View/download PDF
6. Genomic identity of white oak species in an eastern north american syngameon
- Author
-
Elisabeth Fitzek, Erwan Guichoux, Paul S. Manos, Paul F. Gugger, Alan T. Whittemore, Charles H. Cannon, Jeannine Cavender-Bares, Mira Garner, Marlene Hahn, Andrew L. Hipp, Ian S. Pearse, The Morton Arboretum, U.S. National Arboretum, Universität Bielefeld = Bielefeld University, Biodiversité, Gènes & Communautés (BioGeCo), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB), University of Minnesota System, University of Maryland Center for Environmental Science (UMCES), University of Maryland System, Duke University [Durham], and United States Geological Survey (USGS)
- Subjects
Sympatry ,Range (biology) ,[SDV]Life Sciences [q-bio] ,introgression ,Introgression ,Plant Science ,Biology ,single-nucleotide polymorphism (SNP) ,Genome ,Gene flow ,03 medical and health sciences ,Quercus ,0302 clinical medicine ,0502 economics and business ,DNA genotyping toolkit ,hybridization ,Ecology, Evolution, Behavior and Systematics ,Hybrid ,05 social sciences ,syngameon ,15. Life on land ,White (mutation) ,Evolutionary biology ,Sympatric speciation ,030220 oncology & carcinogenesis ,cohesion species ,050203 business & management - Abstract
International audience; The eastern North American white oaks, a complex of approximately 16 potentially interbreeding species, have become a classic model for studying the genetic nature of species in a syngameon. Genetic work over the past two decades has demonstrated the reality of oak species, but gene flow between sympatric oaks raises the question of whether there are conserved regions of the genome that define oak species. Does gene flow homogenize the entire genome? Do the regions of the genome that distinguish a species in one part of its range differ from the regions that distinguish it in other parts of its range, where it grows in sympatry with different species? Or are there regions of the genome that are relatively conserved across species ranges? In this study, we revisit seven species of the eastern North American white oak syngameon using a set of 80 single-nucleotide polymorphisms (SNPs) selected in a previous study because they show differences among, and consistency within, the species. We test the hypothesis that there exist segments of the genome that do not become homogenized by repeated introgression, but retain distinct alleles characteristic of each species. We undertake a range-wide sampling to investigate whether SNPs that appeared to be fixed based on a relatively small sample in our previous work are fixed or nearly fixed across the range of the species. Each of the seven species remains genetically distinct across its range, given our diagnostic set of markers, with relatively few individuals exhibiting admixture of multiple species. SNPs map back to all 12 Quercus linkage groups (chromosomes) and are separated from each other by an average of 7.47 million bp ((+) 8.74 million bp, SD), but are significantly clustered relative to a random null distribution, suggesting that our SNP toolkit reflects genome-wide patterns of divergence while potentially being concentrated in regions of the genome that reflect a higher-than-average history of among-species divergence. This application of a DNA toolkit designed for the simple problem of identifying species in the field has two important implications. First, the eastern North American white oak syngameon is composed of entities that most taxonomists would consider "good species." Second, and more fundamentally, species in the syngameon are genetically coherent because characteristic portions of the genome remain divergent despite a history of introgression. Understanding the conditions under which some loci diverge while others introgress is key to understanding the origins and maintenance of global tree diversity.
- Published
- 2019
- Full Text
- View/download PDF
7. Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity
- Author
-
Björn Stelbrink, Gerrit D. van den Bergh, Robert Hall, Ian Metcalfe, Erik Meijaard, Charles H. Cannon, Mark de Bruyn, Robert Shoup, Thomas von Rintelen, Luigi Maiorano, Robert J. Morley, Gary R. Carvalho, and Luigi Boitani
- Subjects
Geological Phenomena ,Genetic Speciation ,Plant Dispersal ,Ecology ,Biogeography ,Fauna ,Biodiversity ,Biota ,Plants ,Biology ,Southeast asian ,Wallace Line ,Biological Evolution ,Biodiversity hotspot ,Borneo ,Genetics ,Animals ,Biogeography, climate change, Ecology, Geology, Palynology, Phylogenetics ,Species richness ,Animal Distribution ,Asia, Southeastern ,Phylogeny ,Ecology, Evolution, Behavior and Systematics - Abstract
Tropical Southeast (SE) Asia harbors extraordinary species richness and in its entirety comprises four of the Earth's 34 biodiversity hotspots. Here, we examine the assembly of the SE Asian biota through time and space. We conduct meta-analyses of geological, climatic, and biological (including 61 phylogenetic) data sets to test which areas have been the sources of long-term biological diversity in SE Asia, particularly in the pre-Miocene, Miocene, and Plio-Pleistocene, and whether the respective biota have been dominated by in situ diversification, immigration and/or emigration, or equilibrium dynamics. We identify Borneo and Indochina, in particular, as major "evolutionary hotspots" for a diverse range of fauna and flora. Although most of the region's biodiversity is a result of both the accumulation of immigrants and in situ diversification, within-area diversification and subsequent emigration have been the predominant signals characterizing Indochina and Borneo's biota since at least the early Miocene. In contrast, colonization events are comparatively rare from younger volcanically active emergent islands such as Java, which show increased levels of immigration events. Few dispersal events were observed across the major biogeographic barrier of Wallace's Line. Accelerated efforts to conserve Borneo's flora and fauna in particular, currently housing the highest levels of SE Asian plant and mammal species richness, are critically required.
- Published
- 2014
- Full Text
- View/download PDF
8. Developing indicators of economic value and biodiversity loss for rubber plantations in Xishuangbanna, southwest China: A case study from Menglun township
- Author
-
Zhuang-Fang Yi, Chengxi Ye, Ruth D. Swetnam, Charles H. Cannon, and Jin Chen
- Subjects
Opportunity cost ,Ecology ,Agroforestry ,General Decision Sciences ,Afforestation ,Reforestation ,Business ,Marginal land ,Net present value ,Productivity ,Restoration ecology ,Ecology, Evolution, Behavior and Systematics ,Forest restoration - Abstract
In Xishuangbanna, southwest China, rubber plantations are lucrative and have expanded dramatically in the past two decades, leaving little natural forest. The local government hopes to use eco-compensation mechanisms to promote forest restoration without forcing smallholders to forego profits. Based on a landscape productivity model for two management systems and given a range of prices, we assessed the feasibility of this concept by constructing a spatially explicit map of net present value (NPV) of rubber plantations. We found that roughly 7% of existing plantations generally had negative NPV, therefore opportunity costs would be negligible. But to restore forest in buffer zones along roads and rivers as recommended by the state government, more substantial opportunity costs were observed because these areas have high NPV values. Additionally, plantations situated above 900 m elevation or on slopes > 24° were not profitable and a conversion ban should be enforced. Opportunity costs and plant species biodiversity are positively correlated, so any policy to protect species-rich areas must take this relationship into consideration. Eco-compensation schemes can feasibly promote forest restoration on marginal lands and spatially-explicit mapping of NPV can provide monetary targets to adequately recover opportunity costs for smallholders.
- Published
- 2014
- Full Text
- View/download PDF
9. Major declines of woody plant species ranges under climate change in Yunnan, China
- Author
-
Wen-Yun Chen, Ming-Gang Zhang, Niels Raes, Zhe-Kun Zhou, J. W. Ferry Slik, and Charles H. Cannon
- Subjects
Habitat ,Ecology ,Range (biology) ,Species distribution ,Dry season ,Environmental science ,Climate change ,Biological dispersal ,Species richness ,Ecology, Evolution, Behavior and Systematics ,Woody plant - Abstract
Aim A wide range of forests distributed across steep environmental gradients are found in Yunnan, southwest China. Climate change could profoundly change these forests by affecting species ranges. We produce predictions about species suitable habitat shifts and use these to (1) evaluate species range size change, loss and turn-over under no- and full-dispersal and nine climate change scenarios and (2) identify environmental variables responsible for current species richness and future local species losses. Location Yunnan Province, Southwest China. Methods Using MaxEnt, we modelled current distributions of 2319 woody plant species, corrected for collecting bias and found that 1996 had significant spatial association with environmental factors. Using three General Circulation Models (GCMs: CGCM, CSIRO and HADCM3) for the years 2070–2099 (2080s), based on three emission scenarios for each GCM (A1b, A2a and B2a), we predicted the future geographic position of suitable habitat for each species. Results Although most species were predicted to persist within Yunnan, with a maximum extinction rate of c. 6% under the most extreme climate change scenario, up to 1400 species (of the 1996 tested) are expected to lose more than 30% of their current range under the most extreme climate change scenario. Assuming no- or unlimited dispersal minimally affected these outcomes. Species losses were associated with increasing temperature variability and declining precipitation during the dry season. Main conclusions To conserve Yunnan’s woody flora, management efforts should focus on providing elevational migration routes at local scales, with priority for those areas located within previously identified conservation hotspots. As almost all species show range contractions, storage of genetic diversity in seed banks and botanical gardens would be sensible. A change in Yunnan’s conservation policy will be needed to counter the predicted negative impacts of climate change on its flora.
- Published
- 2013
- Full Text
- View/download PDF
10. Dissecting the decision making process of scatter-hoarding rodents
- Author
-
Chengxi Ye, Jin Chen, Bo Wang, and Charles H. Cannon
- Subjects
Ecology ,Foraging ,food and beverages ,Decision process ,Biology ,Decision-making ,Ecology, Evolution, Behavior and Systematics ,Nutrient content ,Hoarding (animal behavior) - Abstract
Many animals scatter-hoard seeds to ensure an even supply of food throughout the year and this behavior requires similar foraging decisions. Seed-traits have been shown to affect the final foraging decision but little is known about the decision process itself. Here, we first defined four sequential steps comprising the decision process of scatter-hoarding rodents: 1) upon encountering a seed, should it be ignored or manipulated; 2) if manipulated, should it be eaten in situ or removed elsewhere; 3) upon removal, how far away should it be carried; and finally 4) whether to eat or cache the removed seed. Using experimental seeds with controlled differences in size, tannin and nutrient content, we evaluated how different traits influence each step in this decision process. We found that different traits had distinct effects on each step. Seed size affected all four steps, while nutrient and tannin content primarily affected the first and third steps. By dissecting foraging behavior in relation to experimentally controlled seed-traits, we have created an effective framework within which to understand the unique relationship between scatter-hoarding rodents that both predate and disperse plant seeds.
- Published
- 2012
- Full Text
- View/download PDF
11. Using species distribution modeling to improve conservation and land use planning of Yunnan, China
- Author
-
Ming-Gang Zhang, Charles H. Cannon, Niels Raes, Zhe-Kun Zhou, J. W. Ferry Slik, and Wen-Yun Chen
- Subjects
education.field_of_study ,Land use ,Agroforestry ,Population ,Species distribution ,Species diversity ,Biodiversity hotspot ,Geography ,Habitat ,Environmental protection ,Umbrella species ,Species richness ,education ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
Part of the Himalayan biodiversity hotspot, Yunnan province in China is a highly diverse terrestrial region, particularly in the wide range of natural forest types. These forests are under considerable conversion pressure as land use intensifies with expanding human population and economic development. Conservation strategies based on the geographic patterns of botanical species richness, including the identification of meaningful floristic regions and priority areas for conservation, could improve the effectiveness of forest policy and management. These strategies should also include current threats of loss due to forest conversion to address the more urgent challenges for sustainable development. Here, we produce distribution models at similar to 10 km(2) resolution for 2319 plant species, using geo-referenced herbarium collections, corrected for spatial bias using a null model, and detailed environmental variables. Based on 1996 species with significant non-random habitat preferences, we identify four important aspects of plant species distribution in Yunnan: (1) species diversity hotspots; (2) seven major floristic regions, using a cluster analysis of species presence/absence; (3) priority areas for conservation based on the concept of the 'irreplaceability' value of planning units and (4) the percentage remaining natural forest among the species rich and conservation priority areas, to assess the level of endangerment. Our maps provide clear priorities for the development of a sustainable and feasible biodiversity conservation strategy for Yunnan. (C) 2012 Elsevier Ltd. All rights reserved.
- Published
- 2012
- Full Text
- View/download PDF
12. Lithocarpus pulongtauensis(Fagaceae), a New Species from Borneo
- Author
-
Xi Chen and Charles H. Cannon
- Subjects
Bract ,Geography ,biology ,Ecology ,Lithocarpus ,Botany ,Phylogenetic study ,Plant Science ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Fagaceae - Abstract
We describe a new species of Lithocarpus from the central Kelabit Highlands of Sarawak, Malaysia with a distribution extending north to Mt. Kinabalu, Sabah. This species was included in a previous morphometric and phylogenetic study of the section Synaedrys, mistakenly identified as L. rotundatus. Several individuals were observed on the western slopes of Mt. Kinabalu between the elevation of 1200–1500 meters. The species has a distinctive cupule, which usually completely encloses the nut and is very dark in color, almost black with a brittle texture similar to charcoal. The fruit is semi-hemispheric in shape and the bracts on the cupule are entirely fused, relatively sparse, stiff, brittle, and prominent.
- Published
- 2011
- Full Text
- View/download PDF
13. Seeing the fruit for the trees in Borneo
- Author
-
Matthew D. Potts, Lucy Chong, Kuswata Kartawinata, Colin R. Maycock, Andy Hector, Eny Faridah, Campbell O. Webb, Sylvester Tan, Chris J. Kettle, Satoshi Nanami, Kanehiro Kitayama, David F. R. P. Burslem, Jaboury Ghazoul, Peter M. Hollingsworth, Rhett D. Harrison, Eyen Khoo, Andrew J. Marshall, Ichie Tomoaki, Gary D. Paoli, Peter S. Ashton, Ismayadi Samsoedin, Lian Pin Koh, Bibian Diway, Douglas Sheil, Charles H. Cannon, and Takuo Yamakura
- Subjects
Dipterocarpaceae ,Ecology ,Poverty ,biology ,Agroforestry ,Biodiversity ,Climate change ,biology.organism_classification ,Forest restoration ,Climate change mitigation ,Deforestation ,Restoration ecology ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
The recent mass fruiting of forest trees in Borneo is an urgent wakeup call: existing policy instruments, financial mechanisms, and forestry infrastructure are inadequate to take full advantage of these infrequent opportunities for forest restoration and conservation. Tropical forest restoration can provide substantial benefits for biodiversity conservation, climate change mitigation, and poverty alleviation. Yet the unpredictability of the synchronized flowering and consequent mass fruiting of many forest trees in Borneo presents a distinctive set of challenges for forest restoration. Significant financing and a considerable coordinated effort are required to prepare for future mass fruiting events if we are to capitalize on opportunities for ecological restoration. The continued high rate of forest clearance in this region and the rarity of mass fruiting events suggest that there may be few remaining opportunities to prevent widespread species extinctions. In this article we propose a facilitatory policy framework for forest restoration in Borneo to stimulate action in advance of the next mass fruiting of forest trees.
- Published
- 2011
- Full Text
- View/download PDF
14. Limited Edge Effects Along a Burned-Unburned Bornean Forest Boundary Seven Years after Disturbance
- Author
-
Floris C. Breman, Charles H. Cannon, Caroline S. Bernard, Marloes van Beek, Frans Bongers, J. W. Ferry Slik, and K. Sidiyasa
- Subjects
Fructification ,Canopy ,geography ,geography.geographical_feature_category ,Ecology ,Tropics ,Inventory data ,Forestry ,Old-growth forest ,Partial correlation analysis ,Environmental science ,Secondary forest ,Forest recovery ,Ecology, Evolution, Behavior and Systematics - Abstract
Large parts of the everwet tropics have been burned, leaving many unburned–burned forest edges. Here we studied a Bornean forest edge to determine: (1) how unburned and burned forest differ in vegetation structure, diversity, composition and plant functional traits 7 yr after fire, and (2) if these variables showed significant edge effects. Environmental and inventory data from 120 plots (0.01 ha each), covering both sides of a � 1.3 km forest boundary were sampled. Differences in vegetation structure, diversity, composition and plant functional traits were analyzed in relation to disturbance type (Mann–Whitney tests) and edge distance (partial correlation analysis that controlled for confounding effects of elevation, slope and fire intensity). Seven years after fire, burned forest differed significantly from unburned forest in most measured variables while few significant edge effects were detected, i.e., there existed a sharp delimitation between the two forest types. The regeneration of the burned forest depended almost entirely on in situ recruitment with little input of late successional species from the neighboring old growth forest. On the other hand, old growth forest showed few signs of edge degradation. A possible explanation for these results might be related to the absence of a mast fruiting event during these first 7 yr of forest recovery, resulting in low levels of late successional species seed input into the burned forest, combined with the quick development of a closed canopy in the burned forest by early successional species that shielded the unburned forest from adverse edge effects.
- Published
- 2010
- Full Text
- View/download PDF
15. Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack
- Author
-
Dezhi Zhang, Charles H. Cannon, Chai-Shian Kua, and John Harting
- Subjects
Comparative genomics ,Genetics ,Comparative Genomic Hybridization ,Genetic diversity ,DNA, Plant ,Genomics ,Sequence Analysis, DNA ,Biology ,Ficus ,Genome ,Trees ,Gene flow ,Quercus ,Genetics, Population ,Evolutionary biology ,Genetic variation ,Genome, Plant ,Ecology, Evolution, Behavior and Systematics ,Reference genome ,Sequence (medicine) - Abstract
Most comparative genomic analyses of short-read sequence (SRS) data rely upon the prior assembly of a reference sequence. Here, we present an assembly free analysis of SRS data that discovers sequence variants among focal genomes by tabulating the presence and frequency of 'complex' fragments in the data. Using data from nine tree species, we compare genomic diversity from populations to families. As a control, we simulated SRS data for three known plant genomes. The results provide insight into the quality and distributional bias of the sequencing reaction. Three main types of informative complexmers were identified, each possessing unique statistical properties. Type I complexmers are unique to a genome but suffer from a high false positive rate, being highly dependent on read coverage and distribution. Type II complexmers are shared between two genomes and can highlight potential copy-number differences. Type III complexmers are exclusive to a subset of genomes and can be useful for associating genetic differences with phenotypic or geographic variation. At the population level in an endangered timber species, numerous markers were identified that could potentially determine geographic origin of individuals and regulate international trade. We observed that the genomic data for the four fig species were more divergent than for stone oak species, possibly due to their complex pollination syndrome and high rates of gene flow. Our approach greatly enhances the application of SRS technology to the study of non-model organisms and directly identifies the most informative genetic elements for more detailed study and assembly.
- Published
- 2010
- Full Text
- View/download PDF
16. Environmental correlates of tree biomass, basal area, wood specific gravity and stem density gradients in Borneo's tropical forests
- Author
-
Reuben Nilus, Hidetoshi Nagamasu, J. W. F. Slik, Niels Raes, Axel Dalberg Poulsen, Shin-ichiro Aiba, John Payne, Douglas Sheil, K. Sidiyasa, Olle Forshed, Kanehiro Kitayama, Francis Q. Brearley, Eizi Suzuki, Gary D. Paoli, Charles H. Cannon, and Johan van Valkenburg
- Subjects
Global and Planetary Change ,Biomass (ecology) ,Gradient analysis ,Ecology ,Amazon rainforest ,Seed dispersal ,Spatial ecology ,Carbon sink ,Environmental science ,Spatial distribution ,Ecology, Evolution, Behavior and Systematics ,Basal area - Abstract
Aim Tropical forests have been recognized as important global carbon sinks and sources. However, many uncertainties about the spatial distribution of live tree above-ground biomass (AGB) remain, mostly due to limited availability of AGB field data. Recent studies in the Amazon have already shown the importance of large sample size for accurate AGB gradient analysis. Here we use a large stem density,basal area,community wood density and AGB dataset to study and explain their spatial patterns in an Asian tropical forest.
- Published
- 2009
- Full Text
- View/download PDF
17. Developing Conservation Priorities Based on Forest Type, Condition, and Threats in a Poorly Known Ecoregion: Sulawesi, Indonesia
- Author
-
Paul J. A. Kessler, Marcy Summers, Charles H. Cannon, and John Harting
- Subjects
Forest type ,business.industry ,Environmental resource management ,Forest change ,Modular construction ,Proxy (climate) ,language.human_language ,Indonesian ,Ecoregion ,Geography ,Environmental protection ,language ,Portfolio ,Protected area ,business ,Ecology, Evolution, Behavior and Systematics - Abstract
The island of Sulawesi is the largest in Indonesian Wallacea, one of the most important ecoregions in SE Asia and globally. Here, we generate a comprehensive and detailed map of forest type, its condition, and some of its threats, which highlights key forest conservation areas, pinpoints frontlines within them, and provides the basis for the development of more specific objectives. We relied upon a variety of techniques to generate five main descriptors of forest quality: condition, its level of endangerment, its landscape setting, its simulated fate given a simple model of forest change, and its overall size. Using the results of this analysis, we assessed the existing protected areas (PA), recognized by the Indonesian government, and a conservation portfolio (CP) generated by a recently completed Ecoregional Conservation Assessment (ECA). Our map of conservation priorities is congruent with previous conservation activities, although several priority areas were identified outside of the current PA system and should be the focus of strategic protected area development. Our ranking system is simple, transparent, and flexible. Its modular construction will allow local managers to choose among available proxy measures and to add their own conservation values according to specific priorities and desired outcomes. We envision this analysis as the foundation upon which more specific conservation strategies, based upon detailed biotic information as it becomes available, can be developed.
- Published
- 2007
- Full Text
- View/download PDF
18. Reply to 'Letter to the editor regarding the article 'Developing indicators of economic value and biodiversity loss for rubber plantations in Xishuangbanna, southwest China: A case study from Menglun township' by Yi et al. (2014) published in Ecological Indicators 36 (2014), 788–797'
- Author
-
Zhuang-Fang Yi and Charles H. Cannon
- Subjects
Biodiversity conservation ,Ecological indicator ,Letter to the editor ,Ecology ,Agroforestry ,Environmental protection ,Value (economics) ,Biodiversity ,General Decision Sciences ,China ,Ecology, Evolution, Behavior and Systematics - Published
- 2016
- Full Text
- View/download PDF
19. A floristic analysis of the lowland dipterocarp forests of Borneo
- Author
-
K. Sidiyasa, Peter S. Ashton, Charles H. Cannon, I. Lanniari, M. G. L. Van Nieuwstadt, Kuswata Kartawinata, Axel Dalberg Poulsen, Hidetoshi Nagamasu, Amiril Saridan, John Payne, René Verburg, Karl A. O. Eichhorn, Campbell O. Webb, J. W. F. Slik, Peter Wilkie, and Michiko Nakagawa
- Subjects
Dipterocarpaceae ,Ecology ,biology ,Dendrogram ,Diameter at breast height ,Species diversity ,Forestry ,Rainforest ,biology.organism_classification ,Phytogeography ,Floristics ,Geography ,Geographical distance ,Ecology, Evolution, Behavior and Systematics - Abstract
Aim To (1) identify floristic regions in the lowland (below 500 m a.s.l.) tropical dipterocarp rain forest of Borneo based on tree genera, (2) determine the characteristic taxa of these regions, (3) study tree diversity patterns within Borneo, and (4) relate the floristic and diversity patterns to abiotic factors such as mean annual rainfall and geographical distance between plots. Location Lowland tropical dipterocarp rain forest of Borneo. Methods We used tree (diameter at breast height ‡ 9.8 cm) inventory data from 28 lowland dipterocarp rain forest locations throughout Borneo. From each location six samples of 640 individuals were drawn randomly. With these data we calculated a Sorensen and Steinhaus similarity matrix for the locations. These matrices were then used in an UPGMA clustering algorithm to determine the floristic relations between the locations (dendrogram). Principal coordinate analysis was used to ordinate the locations. Characteristic taxa for the identified floristic clusters were determined with the use of the INDVAL method of Dufrene & Legendre (1997). Finally, Mantel analysis was applied to determine the influence of mean annual rainfall and geographical distance between plots on floristic composition.
- Published
- 2003
- Full Text
- View/download PDF
20. Phylogeography of the Southeast Asian stone oaks (Lithocarpus)
- Author
-
Paul S. Manos and Charles H. Cannon
- Subjects
Genetic diversity ,education.field_of_study ,Ecology ,biology ,Population ,Castanopsis ,biology.organism_classification ,Southeast asian ,Phylogeography ,Lithocarpus ,parasitic diseases ,Endemism ,education ,Central Highlands ,Ecology, Evolution, Behavior and Systematics - Abstract
Aim To describe current geographical patterns of genetic diversity and infer the historical population dynamics of the stone oaks (Lithocarpus) in Southeast Asia. Location We sampled three populations in Indochina: (1) Yunnan province, China; (2) Pyin Oo Lwin area, Myanmar and (3) north-western Vietnam; two in western Borneo: (1) South-western Sarawak and (2) West Kalimantan, Indonesia; two in central Borneo: (1) north coastal Sarawak and (2) north-eastern Sarawak, Malaysia; and two in northern Borneo: (1) Central Sabah and (2) Northern Sabah, Malaysia. Methods A phylogenetic reconstruction of chloroplast DNA sequence variation from numerous individuals of multiple species was used to determine geographical distribution of genetic diversity. A resampling scheme was used to determine the significance of these patterns at different hierarchical levels of the phylogeny. Results were compared with a previously published set of nuclear DNA sequence data. Results A high level of chloroplast sequence variation was found, which was divided equally between two major clades separated by four non-homoplasious changes. One clade was confined to the island of Borneo, while the other was widespread. Strong geographical structure was observed in the chloroplast sequence variation. The Indo-chinese populations were much more closely related than expected, comparable with the highly endemic and isolated population on the western coast of Borneo. Conversely, individuals from the Kelabit Highlands were found to be more distantly related than expected. The highest levels of genetic endemism were observed in western Borneo. More geographical structure was observed in the Bornean clade than in the Widespread clade, because of limited genetic diversity in the Widespread clade. Relatively weak geographical structure was found in the nuclear sequence variation: only populations in southern China and central Sabah were significantly related. Conclusions The high levels of chloroplast genetic diversity and the persistence of an ancestral haplotype that is a single step away from a haplotype found in Castanopsis indicates the continuous presence of tropical rain forest in Southeast Asia throughout the evolutionary history of the genus (c. 40 Myr). This conclusion is supported by the high frequency of numerous endemic types observed in every population and the relatively few number of ‘missing’ haplotypes. This situation suggests both limited migration and limited extinction. In contrast, the nuclear genetic diversity contained less geographical structure, indicating that our taxonomic sampling among populations was unbiased and that gene flow mediated through pollen is less geographically restricted and contains less geographical structure than purely seed-mediated (chloroplast) gene flow. The most likely scenario suggested by the evidence involves four major patterns: (1) the widespread presence of an ancestral haplotype; (2) the large degree of separation (four non-homoplasious base pairs) between the types found in the two major clades; (3) the concentration of derived types from both major clades found in central and northern Borneo; and (4) the molecular endemism found in each location. These patterns suggest four primary things about the population dynamics of Lithocarpus since the late Eocene: (1) populations have either spanned the entire region throughout much of the evolutionary history of the genus or substantial populations have persisted in both Indochina and Borneo with limited migration between them; (2) significant fragmentation has occurred subsequently between the Asian mainland and the Melasian island archipelago, leading to independent genetic diversification in both regions; (3) several locations possessing significant independent histories, have experienced little migration and have never gone completely extinct; and (4) that the central highlands of Borneo have been re-invaded from the north and the west. The timing of these events is difficult to ascertain but probably predate the Quaternary Period, suggesting that although the recent ice ages might have affected the overall distribution of rain forest in Southeast Asia, it managed to persist in most regions even through the most dramatic drying events.
- Published
- 2003
- Full Text
- View/download PDF
21. The Bornean Lithocarpus Bl. section Synaedrys (Lindl.) Barnett (Fagaceae): its circumscription and description of a new species
- Author
-
Charles H. Cannon and Paul S. Manos
- Subjects
Elliptic fourier analysis ,biology ,Section (archaeology) ,Genus ,Lithocarpus ,Botany ,Receptacle ,Plant Science ,biology.organism_classification ,Phytogeography ,Ecology, Evolution, Behavior and Systematics ,Trichome ,Fagaceae - Abstract
The Bornean species of Lithocarpus Bl. section Synaedrys (Lindl.) Barnett (Fagaceae) are discussed in terms of their unifying characteristics, and keys to the species are provided. A novel morphological feature present in the genus, where the seed in the mature fruit is enclosed by a lignified and thickened receptacle, is illustrated. A new species, L. palungensis Cannon & Manos, is described. It can be distinguished from L. pulcher (King) Markgr. by its submontane distribution, prominent reflexed cupular spines, present at all stages, and broadly oblong leaves with scattered open fasciculate trichomes on the abaxial surface. Foliar trichome types present within the section are also described. Distinctiveness of fruit wall and receptacle shape, as described by two-dimensional elliptic Fourier transformation, is demonstrated by principal components analysis.
- Published
- 2000
- Full Text
- View/download PDF
22. The Bornean Lithocarpus B1. section Synaedrys (Lindl.) Barnett (Fagaceae): its circumscription and description of a new species
- Author
-
CHARLES H. CANNON and PAUL S. MANOS
- Subjects
Plant Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2000
- Full Text
- View/download PDF
23. Fire as a selective force in a Bornean tropical everwet forest
- Author
-
Caroline S. Bernard, Marloes van Beek, K. Sidiyasa, Floris C. Breman, Charles H. Cannon, Karl A. O. Eichhorn, and J. W. Ferry Slik
- Subjects
rain-forest ,Population Dynamics ,Rainforest ,drought ,Biology ,Extinction, Biological ,Fires ,Trees ,Species Specificity ,Borneo ,Abundance (ecology) ,tree diversity ,el-nino ,Bosecologie en Bosbeheer ,Ecosystem ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Population Density ,Ecological niche ,Tropical Climate ,Biomass (ecology) ,geography ,geography.geographical_feature_category ,Extinction ,biomass ,Ecology ,topographic position ,dynamics ,Old-growth forest ,Adaptation, Physiological ,Forest Ecology and Forest Management ,savanna ,Habitat ,amazonian forest ,Species richness ,sense organs ,eastern amazon - Abstract
Tree species rarely exposed to burning, like in everwet tropical forests, are unlikely to be fire adapted. Therefore, one could hypothesize that these species are affected equally by burning and that tree abundance changes are linked solely to fire behavior. Alternatively, if species do react differentially to burning, abundance changes should be linked to tree habitat preference and morphology. Using tree inventories from old-growth and adjacent burned Bornean forest in combination with a database on tree morphology and habitat preference, we test these alternative hypotheses by (1) determining whether species specific abundance changes after fire differ significantly from equal change, and (2) whether observed abundance changes are linked to species morphology and habitat preference. We found that of 196 species tested, 125 species showed an abundance change significantly different from that expected under our null model of equal change. These abundance changes were significantly linked to both tree morphology and habitat preference. Abundance declines were associated with slope or ridge preference, thin barks, and limited seed dormancy. Abundance increases were associated with high light preference, small adult stature, light wood, large leaves, small seeds and long seed dormancy. While species habitat preference and morphology explained observed abundance increases well, abundance declines were only weakly associated with them (R (2) similar to 0.09). This suggests that most tree mortality was random and everwet tropical tree species are poorly fire adapted. As fire frequencies are increasing in the everwet tropics, this might eventually result in permanently altered species compositions and even species extinctions.
- Published
- 2010
24. Communities contain closely related species during ecosystem disturbance
- Author
-
Norman D. Yan, Charles H. Cannon, Matthew R. Helmus, Wendel Keller, James A. Rusak, and Michael J. Paterson
- Subjects
Ecology ,Biodiversity ,Community structure ,Phylogenetic comparative methods ,Biology ,Zooplankton ,Common species ,Disturbance (ecology) ,Crustacea ,Species evenness ,Animals ,Ecosystem ,Species richness ,Ecology, Evolution, Behavior and Systematics ,Phylogeny - Abstract
Predicting community and species responses to disturbance is complicated by incomplete knowledge about species traits. A phylogenetic framework should partially solve this problem, as trait similarity is generally correlated with species relatedness, closely related species should have similar sensitivities to disturbance. Disturbance should thus result in community assemblages of closely related species. We tested this hypothesis with 18 disturbed and 16 reference whole-lake, long-term zooplankton data sets. Regardless of disturbance type, communities generally contained more closely related species when disturbed. This effect was independent of species richness, evenness, and abundance. Communities already under stress (i.e., those in acidic lakes) changed most when disturbed. Species sensitivities to specific disturbances were phylogenetically conserved, were independent of body size, and could be predicted by the sensitivities of close relatives within the same community. Phylogenetic relatedness can effectively act as a proxy for missing trait information when predicting community and species responses to disturbance.
- Published
- 2009
25. Environmental correlates for tropical tree diversity and distribution patterns in Borneo
- Author
-
Hidetoshi Nagamasu, Reuben Nilus, Erik Meijaard, Campbell O. Webb, Eizi Suzuki, Francis Q. Brearley, Douglas Sheil, J. W. F. Slik, Axel Dalberg Poulsen, Charles H. Cannon, Niels Raes, Gary D. Paoli, Shin-ichiro Aiba, S. Wulffraat, Peter Wilkie, and J.L.C.H. van Valkenburg
- Subjects
Soil texture ,Ecology ,Tree inventory ,Soil organic matter ,Biodiversity ,Species diversity ,Spatial distribution ,Southeast Asia ,Floristics ,Phylogenetic diversity ,Wageningen Bioveterinary Research ,Meta-analysis ,Tropical forest ,Borneo ,Environmental science ,Spatial variability ,Ecology, Evolution, Behavior and Systematics - Abstract
Aim Identify environmental correlates for tropical tree diversity and composition. Location Borneo, Southeast Asia. Methods A GIS-environmental database with 5 arc minute ( c . 10 × 10 km) resolution was combined with tree inventory data. Tree diversity, phylogenetic diversity (PD) and the two main compositional gradients were determined for 46 tree inventories. Akaike’s information criterion and a data jackknifing procedure were used to select 50 explanatory models for diversity and composition gradients. The average of these models was used as our final diversity and compositional model. We applied Moran’s I to detect spatial autocorrelation of residuals. Results Tree diversity, PD and the two main compositional gradients in Borneo were all significantly correlated with the environment. Tree diversity correlated negatively with elevation, soil depth, soil coarseness (texture) and organic carbon content, whereas it correlated positively with soil C:N ratio, soil pH, moisture storage capacity and annual rainfall. Tree PD was correlated positively with elevation and temperature seasonality and was largely determined by gymnosperms. However, angiosperm PD also correlated positive with elevation. Compositional patterns were strongly correlated with elevation but soil texture, cation-exchange-capacity, C:N ratio, C and N content and drainage were also important next to rainfall seasonality and El Nino Southern Oscillation drought impact. Main conclusions Although elevation is the most important correlate for diversity and compositional gradients in Borneo, significant additional variability is explained by soil characteristics (texture, carbon content, pH, depth, drainage and nutrient status) and climate (annual rainfall, rainfall seasonality and droughts). The identified environmental correlates for diversity and composition gradients correspond to those found in other tropical regions of the world. Differences between the regions are mainly formed by differences in the relative importance of the environmental variables in explaining diversity and compositional gradients.
- Published
- 2009
26. Long-term reproductive behaviour of woody plants across seven Bornean forest types in the Gunung Palung National Park (Indonesia): suprannual synchrony, temporal productivity and fruiting diversity
- Author
-
Lisa M. Curran, Andrew J. Marshall, Charles H. Cannon, and Mark Leighton
- Subjects
geography ,geography.geographical_feature_category ,Ecology ,Phenology ,National park ,Altitude ,Reproduction ,Biodiversity ,Biology ,Peat swamp forest ,Swamp ,Trees ,Phylogenetic diversity ,Frugivore ,Liana ,Indonesia ,Fruit ,Wetlands ,Seasons ,Ecology, Evolution, Behavior and Systematics ,Ecosystem ,Phylogeny ,Woody plant - Abstract
For 68 months, we observed the reproductive behaviour of 7288 woody plants (172 figs, 1457 climbers and 5659 trees) spanning major soil and elevational gradients. Two 2‐3 month community-wide supra-annual fruiting events were synchronized across five forest types, coinciding with ENSO events. At least 27 genera in 24 families restricted their reproduction to these events, which involved a substantial proportion of tree diversity (> 80% of phylogenetic diversity). During these events, mean reproductive levels (8.5%) represented an almost four-fold increase compared with other months. These patterns indicate a strong behavioural advantage to this unusual reproductive behaviour. Montane forest experienced a single, separate fruiting peak while the peat swamp forest did not participate. Excluding these events, no temporal reproductive pattern was detectible, at either the landscape or forest type. These phenological patterns have major implications for the conservation of frugivore communities, with montane and swamp forests acting as keystone forests.
- Published
- 2007
27. Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae)
- Author
-
Charles H. Cannon and Paul S. Manos
- Subjects
Time Factors ,biology ,DNA, Plant ,Molecular Sequence Data ,Macroevolution ,Acorn ,biology.organism_classification ,Fagaceae ,Evolution, Molecular ,Taxon ,Evolutionary biology ,Borneo ,Lithocarpus ,Molecular phylogenetics ,Botany ,Genetics ,Receptacle ,Internal transcribed spacer ,Ecology, Evolution, Behavior and Systematics ,Phylogeny - Abstract
Fruit type in the genus Lithocarpus (Fagaceae) includes both classic oak acorns and novel modiecations. Bornean taxa with modieed fruits can be separated into two sections (Synaedrys and Lithocarpus) based on subtle shape differences. By following strict criteria for homology and repre- sentation, this variation in shape can be captured and the sections distinguished by using elliptic Fourier or eigenshape analysis. Phenograms of fruit shape, constructed by using restricted maximum likelihood techniques and these morphometric descriptors, were incorporated into combined and comparative analyses with molecular sequence data from the internal transcribed spacer (ITS) region of the nuclear rDNA, using branch-weighted matrix representation. The combined analysis strongly suggested independent derivation of the novel fruit type in the two sections from different acorn- like ancestors, while the comparative analysis indicated frequent decoupling between the molecular and morphological changes as inferred at well-supported nodes. The acorn fruit type has under- gone little modiecation between ingroup and outgroup, despite large molecular distance. Greater morphological than molecular change was inferred at critical transitions between acorn and novel fruit types, particularly for section Lithocarpus. The combination of these two different types of data improved our understanding of the macroevolution of fruit type in this difecult group, and the com- parative analysis highlighted the signiecant incongruities in evolutionary pattern between the two datasets. (Branch length estimates; continuous characters; eigenshape; enclosed receptacle; Fourier; matrix representation.)
- Published
- 2002
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.