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Aim In the marine environment, where there are few physical boundaries to gene flow, there is often nevertheless intraspecific diversity with consequences for effective conservation and management. Here, we compare two closely related dolphin species with a shared distribution in the Indian Ocean (IO) to better understand the biogeographic drivers of their population structure. Location Global oceans and seas with a focus on the Indian Ocean Taxon Tursiops sp. and Delphinus sp. Methods Bayesian, ordination, assignment, statistical and phylogenetic analyses to assess phylogeography, connectivity and population structure using microsatellite and mitochondrial DNA genetic markers. Results Both Tursiops sp. and Delphinus sp. showed population structure across the western IO and, in each case, populations in the Arabian Sea (off India, Pakistan and Oman) were most differentiated. Comparisons with other populations worldwide revealed independent lineages in this geographic region for both genera. For T. aduncus, (for which multiple sites within the IO could be compared), Bayesian modelling best supported a scenario of expansion southwards following a bottleneck event resulting in differentiation between the northern and western IO. For Delphinus, the same pattern is even more pronounced. Populations in the Arabian Sea region of the north-western IO show genetic isolation for each of the two genera, consistent with other studies of cetacean species in this region. Main conclusions We propose that changes in the intensity of the southwest monsoon during the climate cycles of the Pleistocene could have affected regional patterns of productivity and represent an important biogeographic driver promoting the observed patterns of differentiation and population dynamics seen in our focal species. Patterns of population genetic structure are consistent with phenotypic differences, suggesting an influence from distinct habitats and resources, and emphasising the need for effective conservation measures in this geographic region.

Aim The Caribbean reef shark (Carcharhinus perezi) is one of few extant reef sharks inhabiting the Atlantic Ocean. Its variability in movements across habitat types suggests the possibility of a complex genetic population structure. Here, we use mitochondrial and nuclear DNA to investigate the genetic connectivity of the Caribbean reef shark across contemporary and evolutionary time-scales and relate our findings to the ecology of this understudied species. Location Tropical western Atlantic and Caribbean. Methods Samples were obtained from 216 individuals from six western Atlantic and Caribbean locations. Individuals were genotyped at seven nuclear microsatellite DNA loci and sequenced at two mitochondrial (control region [CR]; NADH dehydrogenase subunit 4 [ND4]) and one nuclear locus (lactate dehydrogenase [LDH]). Analyses to resolve the population genetic structure and evolutionary history of this species were adopted. Results Sequencing of the CR (1,068 bp, n = 216), ND4 (741 bp, n = 213) and LDH (258 bp, n = 165) loci, resolved 11, 8 and 13 unique haplotypes (or alleles), respectively. Overall, Caribbean reef sharks showed low levels of genetic diversity and most marker sets identified strong genetic differences (FST and ΦST) between sharks sampled in Brazil versus all other locations (msat FST > 0.017; CR-ND4 ΦST > 0.013). Mitochondrial DNA showed evidence of increased genetic partitioning among western North Atlantic sampling sites, although widespread haplotype sharing (~85%–92%) and a shallow population history were found. Main Conclusions Findings of genetic differentiation are concordant with previous movement studies showing residency and/or site-fidelity to specific locations by individuals. However, similar to other reef shark studies, we found that the level of genetic connectivity among populations was context dependent—i.e., sharks occupying isolated habitats showed greater genetic differentiation compared with those sharks occupying semi-isolated or continuous reef habitats. Furthermore, low genetic diversity and a shallow mitochondrial population history were found, suggesting historical demographic fluctuations, including population collapse and more recent expansions.

Phylogeographic inference has provided extensive insight into the relative roles of geographical isolation and ecological processes during evolutionary radiations. However, the importance of cross-lineage admixture in facilitating adaptive radiations is increasingly being recognised, and suggested as a main cause of phylogenetic uncertainty. In this study, we used a double digest RADseq protocol to provide a high resolution (~4 Million bp) nuclear phylogeny of the Delphininae. Phylogenetic resolution of this group has been especially intractable, likely because it has experienced a recent species radiation. We carried out cross-lineage reticulation analyses, and tested for several sources of potential bias in determining phylogenies from genome sampling data. We assessed the divergence time and historical demography of T. truncatus and T. aduncus by sequencing the T. aduncus genome and comparing it with the T. truncatus reference genome. Our results suggest monophyly for the genus Tursiops, with the recently proposed T. australis species falling within the T. aduncus lineage. We also show the presence of extensive cross-lineage gene flow between pelagic and European coastal ecotypes of T. truncatus, as well as in the early stages of diversification between spotted (Stenella frontalis; Stenella attenuata), spinner (Stenella longirostris), striped (Stenella coeruleoalba), common (Delphinus delphis), and Fraser’s (Lagenodelphis hosei) dolphins. Our study suggests that cross-lineage gene flow in this group has been more extensive and complex than previously thought. In the context of biogeography and local habitat dependence, these results improve our understanding of the evolutionary processes determining the history of this lineage.

© 2017 Elsevier. This manuscript version is made available under the CC-BY-NC-ND 4.0 license: http://creativecommons.org/licenses/by-nc-nd/4.0/, Phylogeography can provide insight into the potential for speciation and identify geographic regions and evolutionary processes associated with species richness and evolutionary endemism. In the marine environment, highly mobile species sometimes show structured patterns of diversity, but the processes isolating populations and promoting differentiation are often unclear. The Delphinidae (oceanic dolphins) are a striking case in point and, in particular, bottlenose dolphins (Tursiops spp.). Understanding the radiation of species in this genus is likely to provide broader inference about the processes that determine patterns of biogeography and speciation, because both fine-scale structure over a range of kilometers and relative panmixia over an oceanic range are known for Tursiops populations. In our study, novel Tursiops spp. sequences from the northwest Indian Ocean (including mitogenomes and two nuDNA loci) are included in a worldwide Tursiops spp. phylogeographic analysis. We discover a new ‘aduncus’ type lineage in the Arabian Sea (off India, Pakistan and Oman) that diverged from the Australasian lineage ∼261 Ka. Effective management of coastal dolphins in the region will need to consider this new lineage as an evolutionarily significant unit. We propose that the establishment of this lineage could have been in response to climate change during the Pleistocene and show data supporting hypotheses for multiple divergence events, including vicariance across the Indo-Pacific barrier and in the northwest Indian Ocean. These data provide valuable transferable inference on the potential mechanisms for population and species differentiation across this geographic range.

Abstract. Aggressive interactions were observed in two primate species: rhesus monkeys, which have a female-bonded social system, and hamadryas baboons, which have a non-female-bonded social system. Dyadic and triadic aggression and assertiveness were examined under controlled ecological conditions and demographic structure, focusing on interactions initiated by adult females between and within two groups of each species. The literature suggests that rhesus monkeys interact with a broad class of partners while hamadryas baboons have limited social interactions. Primates have flexible social systems, however, and differences are probably not due to species specificity. Rhesus females used dyadic interactions more frequently in conflict situations while hamadryas females often involved a third individual. Aggression was directed within more than between groups in both species; hamadryas females sometimes targeted females in other groups, however. The results suggest that interactions initiated by hamadryas females may be overlooked as they use more subtle and complex behaviour than do rhesus females. This difference is discussed in relation to the social system.

Abstract. Models of the ecology of primate groups have predicted that foraging competition among adult females in female-bonded species should occur in rich, clumped food conditions, rather than in meagre dispersed conditions. Competition should occur within groups rather than between groups and non-female-bonded species are not expected to compete. In female-bonded species, females remain in their natal group and develop strong affiliative bonds among female members. In non-female-bonded species, females neither remain in their natal group nor develop affiliative bonds with other female members. While it is not feasible to test the evolution of primate groups, the immediate situation is of interest and can be investigated. The present study tested the predictions of the models in two socially housed primate species, rhesus monkeys and hamadryas baboons, representing a female-bonded and a non-female-bonded species, respectively. Food distribution was manipulated to produce appropriate conditions, and comparisons were made within and between groups as well as between the two species. Neither species conformed completely to the models, although the hamadryas baboons did in most respects. Between-group competition proved to be important with dominance a deciding factor. Spatial and temporal conditions affected competition in rhesus monkeys and temporal conditions in hamadryas baboons. Within-group competition occurred largely in dispersed meagre conditions with food equally available in time. The two species used different strategies to the same end; the hamadryas baboons were more efficient at obtaining food while the rhesus monkeys had a more flexible foraging strategy. Food storage was used by both species as a strategy in foraging competition.

Identifying individuals through time can provide information on population size, composition, survival and growth rates. Identification using photographs of distinctive physical characteristics has been used in many species to replace conventional marker tagging. We evaluated photographic records over 7 years of Vulnerable whale sharks Rhincodon typus, at an aggregation in the Seychelles, for estimation of population size and structure. We collected 11,681 photographs of which only 1,149 were suitable for comparison using semi-automated matching software (I3S) of individual spot patterns behind the gills. Photo-identification showed that there was considerable loss of marker tags and enabled an estimation of the rate of tag loss. The combination of photo-identification with marker tagging identified a total of 512 individual sharks over 2001–2007. Of these, there were 115 resightings in subsequent years with two sharks identified in 2001 resighted 5 years later in 2006 and another shark sighted in 2001 resighted in 2007. Estimates of abundance using conventional open mark–recapture models for 2004–2007 were 348–488 sharks (95% confidence interval), with a high level of entry into the population by itinerants. Annual apparent survival probability was 0.343–0.781 over 2004–2007, with an average annual recapture probability of 0.201. These results are the first to suggest a highly transient population of whale sharks around the Seychelles, indicating that international or at least regional-scale conservation approaches are required.

Feeding in the marine cladoceran, Penilia avirostris Dana, was investigated using plastic micronic beads as a controlled particle source. The range of bead size ingested by P. avirostris was largely limited to diameters of 20 μm and below, perhaps a competitive advantage in nature, was found that: (1) as the concentration of beads increased, the number of beads ingested increased: (2) as the number of P. avirostris increased, the number of beads ingested increased: and (3) the number of beads ingested also increased with body size. The size of P. avirostris , however, did not appear to limit the size of bead ingested, while larger sized animals may be better competitors for particles.

Male satin bowerbirds use feathers to decorate their bowers and often steal feathers and other decorations from the bowers of other males. Decorations are a key element in sexual display and tracking their movement between bowers provides the first detailed information about this unique pattern of sexual competition. For two field seasons the movement of marked feathers was followed. Males varied greatly in stealing activity. The most active feather thieves were often from areas where bowers were close together and they were involved in reciprocal stealing with males at adjacent bowers. The rate of stealing by males was significantly correlated with the number of feathers on their bowers. This suggests that stealing is important in determining the level of bower decoration and mating success. Patterns of stealing behaviour support models of sexual selection which suggest that male interactions are important in influencing female choice through their effect on the quality of male display.