Search

Amauroderma s.lat. has been defined mainly by the morphological features of non-truncate and double-walled basidiospores with a distinctly ornamented endospore wall. In this work, taxonomic and phylogenetic studies on species of Amauroderma s.lat. are carried out by morphological examination together with ultrastructural observations, and molecular phylogenetic analyses of multiple loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1) and the second largest subunit of RNA polymerase II (RPB2), the translation elongation factor 1-α gene (TEF) and the β-tubulin gene (TUB). The results demonstrate that species of Ganodermataceae formed ten clades. Species previously placed in Amauroderma s.lat. are divided into four clades: Amauroderma s.str., Foraminispora, Furtadoa and a new genus Sanguinoderma. The classification of Amauroderma s. lat. is thus revised, six new species are described and illustrated, and eight new combinations are proposed. SEM micrographs of basidiospores of Foraminispora and Sanguinoderma are provided, and the importance of SEM in delimitation of taxa in this study is briefly discussed. Keys to species of Amauroderma s.str., Foraminispora, Furtadoa, and Sanguinoderma are also provided.

Summary Structural host responses of young Acacia mangium and Eucalyptus pellita to infection with the root rot pathogen Ganoderma philippii were described. To our knowledge, this is the first report investigating the histology of root responses infected with G. philippii. The infected roots of A. mangium were characterized by the presence of a continuous multilayered mycelial sheath (~100–200 μm thick), fungal outgrowths and the production of a wound periderm. In contrast, roots of E. pellita were characterized by a mycelial sheath and fungal outgrowths and a wound periderm comprising of only one to four rows of cells.

Plant‐soil feedbacks (PSFs) are important drivers of plant community structure and diversity, with species varying in the way they both condition soils and respond to them. While plant phylogenetic relationships alone can predict this variation in some instances, trait conservatism across phylogenies may provide more reliable predictions. Using integrated common garden and glasshouse inoculation experiments including 13 Eucalyptus species across two subgenera, we specifically investigated soil microbial conditioning and root chemical traits as underlying drivers of phylogenetic differences in PSF. We found that eucalypt species responded variably to soils conditioned by closely related species, depending on their phylogenetic lineage, which was further related to root terpene concentrations and the presence/absence of specific fungal taxa in conditioned soils. Overall, these findings show that trait conservatism in root chemical traits and the subsequent conditioning of soil microbial communities can explain whether or not plants show phylogenetic patterns in PSF.

Ecosystem change is predicted to become more prevalent with climate change. Widespread dieback of cushion plants and bryophytes in alpine fellfield on Macquarie Island may represent such change. Loss of the keystone endemic cushion plant, Azorella macquariensis, was so severe that it has been declared critically endangered. We document the dieback and its extent. Due to the rapidity of the event, we sought to infer causes by testing two mechanistic hypotheses: (i) that extensive dieback was due to a pathogen and (ii) that dieback was a consequence of a change in climate that induced stress in several susceptible species. We searched for pathogens using both conventional and next-generation sequencing techniques. We examined plant functional morphology in conjunction with a long-term climate record of plant-relevant climate parameters to determine whether environmental conditions had become inimical for A. macquariensis. Dieback was found across the entire range of A. macquariensis. A survey found 88% of 115 stratified/ random sites contained affected cushions and 84% contained dead bryophytes. Within-site dieback increased over time. No conclusive evidence that A. macquariensis deaths were caused by a definitive disease-causing pathogen emerged. However, the presence of bacterial, fungal and oomycete taxa, some potentially pathogenic, suggested that stressed cushions could become susceptible to infection. The primary cause of collapse is suspected failure of A. macquariensis and other fellfield species to withstand recent decadal changes in summer water availability. Increased wind speed, sunshine hours and evapotranspiration resulted in accumulated deficits of plant available water spanning 17 years (1992-2008). High vulnerability to interrupted water supply was consistent with functional morphology of A. macquariensis, and climate change has altered the species' environment from wet and misty to one subject to periods of drying. Synthesis and applications. With alpine fellfield dieback baseline data on Macquarie Island established, future monitoring will determine whether this event represents a transient, decadal-level change in the ecosystem or the initiation of a climate-related, transformation away from an Azorella-dominated fellfield ecosystem. That mechanisms driving ecosystem collapse were complex and multiple stressors appeared to be impacting cumulatively may be relevant to other locations. With alpine fellfield dieback baseline data on Macquarie Island established, future monitoring will determine whether this event represents a transient, decadal-level change in the ecosystem or the initiation of a climate-related, transformation away from an Azorella-dominated fellfield ecosystem. That mechanisms driving ecosystem collapse were complex and multiple stressors appeared to be impacting cumulatively may be relevant to other locations.

Summary Spring needle cast (SNC) in Tasmania is defined by the early casting of pine needles and appears in 6- to 7-year-old pine plantations after canopy closure. The severity of SNC can vary significantly among trees growing within the same plantation. Fungal communities were surveyed in a Pinus radiata family trial, using DNA extraction from needles, PCR with fungal-specific primers and sequencing to detect the presence of fungal species. Samples were taken at the same time as the trees were scored for disease severity. Trees with contrasting levels of SNC disease severity have significantly different needle fungal communities, but family pedigree and different ages of needle are not clearly distinguished by their fungal communities. All common fungal pathogens previously implicated in causing SNC were identified from the study, but of these, only Lophodermium pinastri was correlated with high levels of disease. Several species of Teratosphaeriaceae were detected, and one of these was also strongly associated with needle cast.

Two Acacia seed orchards, one each of A. mangium and A. auriculiformis , in Central Java have suffered high losses from root rot associated with a species of Ganoderma that is distinct from G. philippii , which causes extensive losses in A. mangium plantations in Sumatra and Kalimantan. Ganoderma steyaertanum was consistently isolated from roots of affected trees in the Javanese orchards and pathogenicity was confirmed by satisfying Koch's postulates. The mode of spread of the pathogen was examined by analysing the distribution of tree deaths in the A. mangium seed orchard and conducting somatic incompatibility tests among G. steyaertanum isolates from diseased trees. Spatial analyses indicate that, after an initially random disease distribution, the pattern of tree deaths was clustered. This is consistent with spore colonisation of thinned stumps followed by vegetative spread through root-to-root contact, as has been observed for other root pathogens such as Heterobasidion annosum . Somatic incompatibility tests demonstrated high genetic variability of the pathogen with root-to-root spread also confirmed.

The rapid emergence of Acacia mangium as the key industrial plantation species in Indonesia has been followed by the equally rapid emergence of red root rot ( Ganoderma philippii ) as its potential nemesis. As a consequence, and on severely affected mineral soils in equatorial tropical environments in particular, A . mangium may no longer be capable of producing commercial yields after three rotations. In this experiment, 100-tree plots were established in commercial plantings of A . mangium at five sites which represented the range of growing conditions used for plantation establishment in Indonesia. Repeated monitoring at approximately 6-month intervals of above- and below-ground variables was used to explore relationships between measures of tree health and root rot. Crown colour and density were poor predictors of either the presence or severity of infections. Tree mortality increased more or less linearly with time and led to the progressive coalescence of initially discrete disease gaps. The average rate of disease development was about 0.3% per month, and average time from infection to tree death was conservatively estimated at around 1 year. Trees with more than four dead/missing neighbours had a >50% chance of being dead by the following monitoring. By the end of the monitoring period >40% of trees were classified as dead/missing, although this value varied from 20 to 70% depending on site, tree age and rotation. Canonical discriminant analysis correctly allocated >90% trees into their correct group on the first monitoring and similarly classified whether trees would be dead or missing in the following monitoring.

DNA sequence variation in the rDNA internal transcribed spacers (ITS) was exploited to design species-specific primers for Ganoderma philippii and Ganoderma mastoporum , two fungi associated with red root rot in Acacia mangium and other perennial crops. Specificity was verified against five other Ganoderma species, 34 other basidiomycete species and two ascomycete species. The PCR tests assisted in the identification of 822 fungal isolates obtained from A. mangium and Eucalyptus pellita plantations in Indonesia. These tests have provided a high level of confidence in the identification of the major root rot pathogens, information that can be used to support the development of management options for their control in A. mangium plantations.

Summary This study describes and identifies the fungi associated with root-rot disease in Eucalyptus pellita, associated anecdotally with a species of Phellinus. Macro- and microscopic morphological observations and DNA analysis were used to identify sporocarps and fungal cultures growing from symptomatic root samples. Investigation of 12 sites in Central Sumatra revealed that red root-rot disease caused by species of Ganoderma (most commonly Ganoderma philippii) was as prevalent as root disease caused by Phellinus noxius. The study also detected the presence of several potential fungal agents of root rot at any one site. Fungal signs such as absence/presence of sporocarps were a poor indicator of root-rot incidence in stands. Instead, fungal isolation from infected roots was essential to obtain accurate identification of active pathogens.

An investigation of root rot in Acacia mangium plantations in Indonesia generated over 1000 fungal isolates from field surveys at six locations. The majority of isolates were identified as Ganoderma philippii or Ganoderma mastoporum by species-specific PCR, but this still left 274 isolates to be identified. As barcoding initiatives for fungi are still in the early stages, to assist identification of these isolates in this way we developed a database of sequences based on identified sporocarps and also searched public DNA sequence databases for sequences with high similarity. The database of sequences from sporocarp collections is more limited than public DNA databases. This resulted in more reliance on public DNA databases for a high proportion of taxa. Several pathogenic species were identified, with Phellinus noxius occurring at several locations and on both A. mangium and Eucalyptus pellita . Ganoderma steyaertanum was isolated from A. mangium roots and Rigidoporus microporus from E. pellita roots, each at a single location only. Potential pitfalls of using public DNA databases for fungal identification are discussed and methods to avoid these and increase confidence in the identification are presented.

Ganoderma philippii causes root-rot disease in a wide range of commercial perennial woody crops such as rubber and tropical acacias. In terms of productivity loss, the disease is considered as the most economically damaging disease of Acacia mangium . Many strategies to manage root rot have been developed and applied, including application of biological control which has focused on species and strains of the ascomycete genus Trichoderma . This research aimed to test the potential of a wood-rotting basidiomycete as a biocontrol agent for root rot caused by Ganoderma philippii . This basidiomycete was isolated from a Eucalyptus pellita stump in a coppicing trial in Riau province, central Sumatra. DNA sequence analysis indicated that this isolate is most likely a Phlebiopsis sp. In vitro tests and microscopic morphological description of mycelial interactions between the Phlebiopsis and G. philippii isolates showed a mycoparasitic reaction. This result offered an alternative potential fungal isolate for root-rot management in Indonesia as Phlebiopsis gigantea is already successfully used as a biocontrol agent for managing root rot caused by Heterobasidion annosum throughout pine forests in Europe and North America.

USDA-Forest Service, RMRS-Forest and Woodlands Ecosystem Program, Western Wildlands Environmental Threat Assessment Center, Special Technology Development Program, State and Private Forestry, Forest Health Protection-Region 5; Conselho Nactional de Desenvolvimento Cientifico e Tecnologico, Brasil (CNPq); Fundacao de Amparo a Pesquisa do Estado de Minas Gerais (FAPEMIG); Research Joint Venture Agreements RMRS 15-JV-11221633-160 (Jane Stewart, Colorado State University) and RMRS 14-JV-11221633-117 (Western Forest Conservation Association).

Cyclaneusma Needle Cast is associated with the fungal pathogen Cyclaneusma minus . The disease has led to significant losses of Pinus radiata production in New Zealand, but the disease appears less serious in Australia. Two cultural morphotypes of C. minus have been discriminated in New Zealand, and isolates from Australia also correspond to these two morphotypes. To examine if the two morphotypes of Cyclaneusma are different species, phylogenetic analysis using sequences from five gene regions (rDNA ITS, mt-LSU, n-LSU, tef–1 and βT-1) was conducted. This study revealed that C. minus consists of two distinct clades which correspond to the two morphotypes. One morphotype (‘verum’) was more closely related to Cyclaneusma niveum than to the other morphotype (‘simile’). A morphological description is required to formalise the new species represented by the ‘simile’ clade; an investigation of the individual pathogenic behaviours of both morphotypes is also required.

Eucalypt forest decline has a complex aetiology often linked to altered soil chemistry caused by environmental disturbances. Forest decline has also been linked to alterations in ectomycorrhizal (ECM) fungal communities, which are imperative for nutrient transfer and affect ecosystem productivity and health. Our aim was to determine the influence of soil chemistry on ECM fungal communities and tree health in declining temperate eucalypt forests. We hypothesise that forests with changed soil chemistry, in particular altered nitrogen cycling associated with forest decline, supports unique ECM fungal communities. ECM communities from twelve Eucalyptus delegatensis forest plots were characterised by DNA sequencing of root tip and sporocarp samples. Tree health and nutrient concentrations from soil and foliage samples were quantified for each plot. Multivariate and regression analyses and t-tests were used to determine ECM fungal community differences between forest health classes, and identify which soil variables were important for defining these communities. Elevated available soil nitrogen and soil acidity were associated with severely declining forest. Soil pH, nitrate and organic carbon significantly explained the majority of variation in ECM fungal community composition and structure, which differed between moderately and severely declining forest. Russulaceae species richness was greatest in acidic soils (severely declining forest) while Cortinariaceae species richness was greatest in soils with lower concentrations of soil nitrate (moderately declining forest). Total ECM fungal richness was inversely related to available soil phosphorus and soil nitrate. Thus, altered soil chemistry associated with eucalypt forest decline mediates changes in the ECM fungal community. Forest management must consider the role of disturbance in maintaining suitable soil conditions for symbiotic fungi which are important for maintaining healthy eucalypt forest and restoring declining forest ecosystems.

The possible drivers and implications of an observed latitudinal cline in disease resistance of a host tree were examined. Mycosphaerella leaf disease (MLD) damage, caused by Teratosphaeria species, was assessed in five Eucalyptus globulus (Tasmanian blue gum) common garden trials containing open-pollinated progeny from 13 native-forest populations. Significant population and family within population variation in MLD resistance was detected, which was relatively stable across different combinations of trial sites, ages, seasons and epidemics. A distinct genetic-based latitudinal cline in MLD damage among host populations was evident. Two lines of evidence argue that the observed genetic-based latitudinal trend was the result of direct pathogen-imposed selection for MLD resistance. First, MLD damage was positively associated with temperature and negatively associated with a prediction of disease risk in the native environment of these populations; and, second, the quantitative inbreeding coefficient (QST) significantly exceeded neutral marker FST at the trial that exhibited the greatest MLD damage, suggesting that diversifying selection contributed to differentiation in MLD resistance among populations. This study highlights the potential for spatial variation in pathogen risk to drive adaptive differentiation across the geographic range of a foundation host tree species.

Fungal diversity of Australian eucalypt forests remains underexplored. We investigated the ectomycorrhizal (EcM) fungal community characteristics of declining temperate eucalypt forests in Tasmania. Within this context, we explored the diversity of EcM fungi of two forest types in the northern highlands in the east and west of the island. We hypothesised that EcM fungal community richness and composition would differ between forest type but that the Cortinariaceae would be the dominant family irrespective of forest type. We proposed that EcM richness would be greater in the wet sclerophyll forest than the dry sclerophyll forest type. Using both sporocarps and EcM fungi from root tips amplified by PCR and sequenced in the rDNA ITS region, 175 EcM operational taxonomic units were identified of which 97 belonged to the Cortinariaceae. The Cortinariaceae were the most diverse family, in both the above and below ground communities. Three distinct fungal assemblages occurred within the wet and dry sclerophyll forest types and two geographic regions that were studied, although this pattern did not remain when only the root tip data were analysed. EcM sporocarp richness was unusually higher than root tip richness and EcM richness did not significantly differ among forest types. The results are discussed in relation to the importance of the Cortinariaceae and the drivers of EcM fungal community composition within these forests.

Free air CO2 enrichment (FACE) experiments are considered the most reliable approach for quantifying our expectations of forest ecosystem responses to changing atmospheric CO2 concentrations [CO2]. Because very few Australian tree species have been studied in this way, or are likely to be studied in the near future because of the high installation and maintenance costs of FACE, there are no clear answers to questions such as: (1) which species will be the winners in Australia's natural forests and what are the implications for biodiversity and carbon (C) sequestration; and (2) which will be the most appropriate species or genotypes to ensure the sustainability of Australia's plantation forests. We examined possible experimental approaches that may provide insights into, and more rapid assessment of, responses to elevated [CO2]. Our main conclusions were: (1) better understanding the extent to which species are C-limited could indicate when elevated [CO2] might be expected to increase photosynthesis and biomass production. Plant tissue carbohydrate concentrations can be used to assess any C limitation. Consistently high levels of carbohydrates indicate that plants are not C limited, but rather that growth is determined by other limiting resources or by rates of cell development and expansion; (2) historical examination of forest responses to increasing atmospheric [CO2] using stable isotopes in wood cores can provide clues as to which species may respond favourably to increasing [CO2], although it may remain difficult to distinguish between the environmental conditions under which favourable responses occurred. Undertaking stable isotope studies close to anthropogenic CO2 sources has the potential to provide insights into how species may respond to the higher [CO2] that is predicted during this century; (3) by focusing on genetic and metabolomic regulation of source and sink activity, selection for greater biomass production under elevated [CO2] is possible.

Acacia mangium is a fast-growing tree species. It is mainly planted in large monocultures for pulpwood in South-East Asia. Root rot has become the most economically damaging disease of this species with high tree mortality rates observed during second and third rotations. Two main types of root rots have been found in A. mangium, viz. brown root-rot and red-root disease caused by Phellinus spp. and Ganoderma spp., respectively. To assess the future management options for root rot of A. mangium, we review past and current disease-management strategies for root rot in different temperate and tropical industrial tree crops. The efficacies of a wide range of silvicultural, chemical and biological options are detailed, and their potential utilization in managing root rot of A. mangium is discussed. We conclude that the current gaps in knowledge regarding identification, biology and disease epidemiology of the root-rot pathogens will need to be addressed so that effective management options can be developed

Species richness and species composition of ectomycorrhizal (EM) fungi were compared among rehabilitated mine sites and unmined jarrah forest in southwest Western Australia. Species richness, measured in 50 m × 50 m plots, was high. In the wetter, western region, mean species richness per plot in 16-year-old rehabilitated mine sites (63.7 ± 2.5, n = 3) was similar to that of unmined jarrah forest (63.6 ± 9.6, n = 9). In the drier, eastern region, species richness in 12-year-old rehabilitated mine sites (40.3 ± 2.1, n = 3) approached that of nearby forest (52.4 ± 9.3, n = 9). Species composition was analysed by detrended correspondence analysis. Rehabilitated sites of similar age clustered together in the analysis and species composition was closer to the native jarrah forest in the older rehabilitated plots. In unmined forest, species composition of fungal communities in the wetter, western region was different from communities in the drier, eastern region.

Puccinia psidii is considered a biosecurity threat in Australia because of its broad host range that includes many species of Myrtaceae which dominate Australian ecosystems. Since it was first reported in this country, in April 2010, there has been little information about the population structure of the pathogen. In this study, six microsatellite loci were analysed to determine the genetic relationship among rust specimens from different hosts and locations in Australia, New Caledonia, Hawaii and China. The Chinese and New Caledonian specimens share a multi-locus genotype with the majority of the Australian specimens. The results also indicated a close relationship between Australian and Hawaiian samples. At present, the P. psidii population in Australia is genetically uniform with no evidence of sexual recombination. Five of the 104 collections varied by one allele at single loci, indicating that mutations are common but persistence of the mutants in the population may be less common.

Summary In Vietnam, the productivity of Acacia hybrid (Acacia mangium x A. auriculiformis) plantations is being threatened by an aggressive canker pathogen, Ceratocystis manginecans, and selection for tolerance is the main control strategy. A pot trial was established in Binh Duong province to screen for the host response of nine Acacia genotypes (six Acacia hybrid clones, two A. auriculiformis clones and mixed provenance seedlings of A. mangium) to artificial inoculation with three isolates of C. manginecans. Lesion lengths as measured on the inner bark suggested that the two A. auriculiformis clones were relatively more tolerant to C. manginecans than the A. mangium genotype. In contrast, the lesion lengths of all six Acacia hybrid clones fell between the A. auriculiformis and A. mangium genotypes. The results of this study indicate that among the Acacia hybrid clones, BV10 showed the most tolerance to C. manginecans. Chemical analysis of crude sapwood extracts sampled from the lesion provided some evidence that induced phenolic compounds, particularly tetrahydroxyflavanone and condensed tannins may have a defensive role in the Acacia—C. manginecans pathosystem. However, results were not consistent across individual Acacia hybrid clones and A. mangium genotypes.

Gondwanan vegetation, and the Australian region in particular, is species rich for ectomycorrhizal fungi in epigeous and hypogeous forms with over 100 species recorded in small (1 ha) patches of forests. Distinguishing co-occurring ectomycorrhizal fungi as root associations in native (natural or wildlands) vegetation or plantations and discriminating them from other larger basidiomycetes, e.g. wood and leaf litter decomposer fungi, places large demands on molecular identification, especially if interspecific similarities and intraspecific variation occur in target sequences. One hundred and nine species of larger basidiomycetes from a single forest location were characterised by PCR-RFLP profiles of two genomic regions (nuclear rDNA ITS and mtLSU). Over one-third of the species for which multiple isolates were tested showed intraspecific variation in either one or both genomic regions. This remarkably high variation questions previous assumptions about intraspecific ITS sequence variation and highlights the value of integrated molecular and morphological databases including voucher specimens. It also emphasises the value of molecular investigations that use more than one genomic region. Interspecific similarities were common among the Cortinariaceae, especially in the ITS region. Discrimination of most Cortinariaceae species was achieved using variation in the mtLSU region in conjunction with the ITS. This new information raises the possibilities that the ITS sequence is more conserved and the mtLSU more variable than among species of the other 23 families. In the other families, interspecific ITS variation was greater and the mtLSU profiles grouped species within families. The high variation in the two genomic regions indicated possible differences in the fungal population structure between two adjacent, differently managed blocks of Eucalyptus marginata forest. The significance of this variation to ecology, biodiversity assessment and ecosystem management are discussed.

Summary Acacia hybrid (Acacia mangium × A. auriculiformis) is widely planted in Vietnam, and part of the estate is managed for solid timber products. This requires pruning and thinning – practices that through mechanical wounding can facilitate the entry of fungal organisms, leading to stem defects. The extent to which this happens in Acacia hybrid has not been previously studied in Vietnam. A destructive survey was conducted in a 3-year-old Acacia hybrid plantation at Nghia Trung in Binh Phuoc province, 18 months after the imposition of pruning and thinning treatments. Pruned trees had a higher incidence and severity of discoloration and decay in the stem than unpruned trees; thinning increased the incidence of stem decay and the severity of discoloration but not the severity of decay. An interaction between pruning and thinning did not influence the incidence of stem decay but did increase the severity of discoloration in thinning treatments. Across treatments, levels of discoloration and decay were

Puccinia psidii causes a rust disease on a broad range of hosts in the Myrtaceae and Heteropyxidaceae. It is native to South America where it can cause severe disease in eucalypt plantations and other introduced Myrtaceae. The pathogen has recently expanded its geographical range to Hawaii, increasing concerns about the potential for an incursion in Australia. This paper reviews the taxonomy, biology, impact and options for control of P. psidii. It also discusses the probable impact if an incursion were to occur in Australia and the preparations that must be made to mitigate adverse consequences.