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This study gives an overview of status and distribution of signal crayfish (Pacifastacus leniusculus), the first NICS in Estonia and its influence on native noble crayfish (Astacus astacus) populations. The first specimen of signal crayfish was caught during the monitoring of noble crayfish in North Estonia in 2008. The signal crayfish has since been found in three additional sites. Test fishing has indicated that the abundance of signal crayfish has been fluctuating between years and among localities. It has had strong negative impact on abundance of one noble crayfish population. The disconnected distribution of signal crayfish strongly suggests that these populations are the result of human-assisted introductions. Real-time PCR analyses proved that signal crayfish carry the causative agent of the crayfish plague, an oomycete Aphanomyces astaci, thus contributing to its spread. Mortalities in noble crayfish populations had been caused by A. astaci strains from A, B and E genotype group.

Invasive marbled crayfish Procambarus virginalis (Lyko, 2017) is spreading alarmingly fast across European countries and beyond. Early maturation, parthenogenetic reproduction mode and high growth rate contribute to a high potential invasiveness. Marbled crayfish can pose severe effects on native communities impacting the native crayfish populations being carrier of the crayfish plague disease caused by Aphanomyces astaci. Here we report the first record of marbled crayfish in Estonia. In total, 104 individuals were found in the artificially warm outflow channel of the cooling system of Balti Power Plant, entering to the water reservoir of the River Narva. Molecular analyses confirmed the morphological identification of captured specimens as a marbled crayfish. Four out of six marbled crayfish individuals exhibited the presence of crayfish plague agent, though at very low level. This suggests that marbled crayfish can potentially be a new vector of crayfish plague in Estonian freshwater ecosystems containing native noble crayfish Astacus astacus populations. Monitoring and eradication actions are urgently needed not only in the outflow channel where the species was found but in the whole water reservoir and River Narva itself. peerReviewed

The feeding impact of planktivorous fish on microbial organisms is still poorly understood. We followed the seasonal dynamics of the food web in two natural fishponds for two years: one was stocked with planktivorous whitefish while the other had no planktivorous fish. The aim of the study was the simultaneous assessment of the feeding behaviours of planktivorous fish and of bacterivorous meta-/protozooplankters. We hypothesized that in the presence of planktivorous fish there would be fewer metazooplankton, more protozoans and decreased numbers of bacteria. Our results showed that the amount of metazooplankton eaten by the fish was indeed negatively correlated with metazooplankton biomass. The feeding impact of planktivorous fish in shaping the microbial loop was remarkable. The main grazers of bacteria in the fishpond were ciliates, whereas in the pond without fish these were heterotrophic nanoflagellates. In the fishless pond the role of the top predator shifted to the predaceous metazooplankter Leptodora kindtii which controlled the abundance of herbivorous metazooplankters. We found a negative relationship between the number of bacteria and flagellates in the fishless pond, while the number of bacterivorous ciliates was suppressed by predaceous ciliates. Therefore the bacteria-grazing activity was higher in the absence of planktivorous fish.

We assessed feeding of planktivorous fish larvae on ciliate protozooplankton in shallow eutrophic Lake Vortsjarv, Estonia to determine whether ciliates are an important part of larval fish diet. We collected larvae of the most common fish species and examined their gut contents by gut segmentation and epifluorescence microscopy. Ciliates were present in the gut of all fish larvae. Gut segmentation analysis showed clear differences in food composition between gut quarters. The hard-bodied food items were quite evenly distributed in the gut, but the soft-bodied ciliates and rotifers were present only in the first gut quarters. Neglecting differences in prey digestion rate leads to underestimation of diet amount and composition and, especially, to underestimation of the role of protists in food. In Vortsjarv, ciliates account for ∼ 60% of the total carbon biomass consumed by fish larvae. The food requirement of fish larvae during first feeding stages (May-Jun) would not be met without consumption of ciliates.

Variation of 10 microsatellite loci was analyzed in 12 rainbow trout strains reared in northern and Eastern Europe (Finland, Denmark, Sweden, Norway, Estonia and Poland). For comparison, two wild populations from Canada and a farmed strain from USA (Shasta strain from California) were analyzed. In majority of European strains, the level of variability, measured as the average allele richness and observed heterozygosity, was similar to that of Shasta strain with the exception of two Polish strains which exhibited significantly lower variability and elevated level of inbreeding. Only 0.9% of the total genetic variation in farmed strains was accounted for by differences between the countries of origin, 13.7% was due to differentiation among the strains within the countries and 85.5% was due to variation within strains. The farmed strains were moderately differentiated (average FST=0.14) and the individual fish could be assigned to their strain of origin with an average of 90% accuracy. The European strains were genetically more similar to the Shasta strain than to the Canadian wild populations which provide support to their ancestry from rainbow trout populations in California. © 2007 Elsevier B.V. All rights reserved.

Quick changes in community composition and population dynamics of planktonic ciliates were studied in the ponds of two fish farms obtaining water from different sources (from a fast flowing river or a stillwater reservoir). Samples were taken at two-day intervals during a short period after springtime filling of the ponds. At the beginning of the investigation period the community in the lotic ponds was dominated by species that favour periphyton or benthos as their habitat. They were gradually replaced by euplanktonic species. In the lentic ponds euplanktonic species dominated throughout our study. The similarity index ISj between lotic ponds and their inflow was 0.67 at the start of our study but decreased to 0.2 during 14 days. If the inflow was from a stillwater reservoir, the similarity index decreased only moderately. In the lotic ponds ciliate community shifted from bacterivory to algivory while in the case of lentic ponds the situation was the opposite - algivorous species were gradually replaced by bacterivores. Abiotic and biotic factors that determine ciliate community structure were separated. The abiotic features are ruling when the system goes through major changes (in our study the lotic pond system where water flow ceased dramatically). The biotic factors are crucial in more stable systems (in our study the lentic pond system) and can change the community structure in same degree as the abiotic ones.

The genetic structure and isolation pattern of the Atlantic salmon (Salmo salar) throughout its range in the Baltic Sea were examined as a starting point for a conservation strategy for the species in this area. The allozyme variation in seven polymorphic loci was studied in 5125 salmon from 24 rivers in four countries. A clear dichotomy was observed between stock groups from southeastern (Russia, Estonia, Latvia, southern Sweden) and northwestern (northern Finland, northern Sweden) drainage regions, corresponding to the postglacial colonisation of the Baltic Sea by two phylogeographic lineages, one from the east (the Ice Lake lineage) and one from the west (the Atlantic lineage). The geographical and genetic distances between stocks fit the one-dimensional "isolation-by-distance" model (p < 0.001). The estimated gene flow ranged from 0 to10 migrants per generation. The total diversity of hatchery stocks was 72% of that of the wild stocks. Genetically similar stock groups, phylogeographic lineages, and drainage regions are recommended for use as genetic management units in addition to stock level.

Sixty-four samples from 46 salmon populations totalling 2369 specimens were used for polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the mitochondrial ND1 region. The final analyses included 3095 specimens from 60 populations in Northern Europe. A subsample was analysed by RFLP of ND3/4/5/6. Representative RFLP haplotypes from different parts of the distribution area were sequenced and the phylogeny of European haplotypes and their relations to the North American lineage was described. The four common European haplotypes derive from the ancestral ND1-BBBA (rooting the European clade to the North American) by one-step substitutions: AAAAAABABBBABBBB. The Swedish west-coast populations differ from the geographically close southern Baltic, indicating absence of inward and limited outward gene flow through the Danish straits during the last 8000 years. Within the Baltic Sea, only three ND1 haplotypes were detected and there was no variation for ND3/4/5/6. In the whole southern Baltic and in lakes Vänern, Ladoga and Onega the haplotype AABA dominated. Proposed postglacial colonization routes to the Baltic Sea are discussed in relation to the haplotype distribution pattern.