8 results on '"Mohammad Iqbal Omar"'
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2. Bacteria Classification Using Electronic Nose for Diabetic Wound Monitoring
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Mohammad Iqbal Omar, Ammar Zakaria, Ali Yeon Md Shakaff, Azian Azamimi Abdullah, Abdul Hamid Adom, Amizah Othman, Nurlisa Yusuf, Yeap Ewe Juan, Mohd Sadek Yassin, and Latifah Munirah Kamarudin
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Chromatography ,Electronic nose ,Odor ,Open wounds ,biology ,Chemistry ,Microorganism ,Statistical analysis ,General Medicine ,Linear discriminant analysis ,biology.organism_classification ,Diabetic wound ,Bacteria - Abstract
Array based gas sensor technology namely Electronic Nose (E-nose) now offers the potential of a rapid and robust analytical approach to odor measurement for medical use. Wounds become infected when a microorganism which is bacteria from the environment or patients body enters the open wound and multiply. The conventional method consumes more time to detect the bacteria growth. However, by using this E-Nose, the bacteria can be detected and classified according to their volatile organic compound (VOC) in shorter time. Readings were taken from headspace of samples by manually introducing the portable e-nose system into a special container that containing a volume of bacteria in suspension. The data will be processed by using statistical analysis which is Principle Component Analysis (PCA) and Linear Discriminant Analysis (LDA) methods. The most common bacteria in diabetic foot are Staphylococcus aureus, Escherchia coli, Pseudomonas aeruginosa, and many more.
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- 2013
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3. Feature extraction techniques using multivariate analysis for identification of lung cancer volatile organic compounds
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Latifah Munirah Kamarudin, Reena Thriumani, Khaled Mohamed Helmy, Ammar Zakaria, Yumi Zuhanis Has-Yun Hashim, Amanina Iymia Jeffree, Abdul Hamid Adom, Mohammad Iqbal Omar, and Ali Yeon Md Shakaff
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Multivariate analysis ,Steady state (electronics) ,Electronic nose ,Chemistry ,business.industry ,Speech recognition ,Feature extraction ,Pattern recognition ,Linear discriminant analysis ,medicine.disease ,Probabilistic neural network ,medicine ,Artificial intelligence ,business ,Cluster analysis ,Lung cancer - Abstract
In this experiment, three different cell cultures (A549, WI38VA13 and MCF7) and blank medium (without cells) as a control were used. The electronic nose (E-Nose) was used to sniff the headspace of cultured cells and the data were recorded. After data pre-processing, two different features were extracted by taking into consideration of both steady state and the transient information. The extracted data are then being processed by multivariate analysis, Linear Discriminant Analysis (LDA) to provide visualization of the clustering vector information in multi-sensor space. The Probabilistic Neural Network (PNN) classifier was used to test the performance of the E-Nose on determining the volatile organic compounds (VOCs) of lung cancer cell line. The LDA data projection was able to differentiate between the lung cancer cell samples and other samples (breast cancer, normal cell and blank medium) effectively. The features extracted from the steady state response reached 100% of classification rate while the tran...
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- 2017
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4. A PRELIMINARY STUDY ON DETECTION OF LUNG CANCER CELLS BASED ON VOLATILE ORGANIC COMPOUNDS SENSING USING ELECTRONIC NOSE
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Ammar Zakaria, Yumi Zuhanis Has-Yun Hasyim, Mohammad Iqbal Omar, Amanina Iymia Jeffreea, Ali Yeon Md Shakaff, Latifah Munirah Kamarudin, Khaled Mohamed Helmy, Reena Thriumani, and A. H. Adom
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Materials science ,Electronic nose ,General Engineering ,medicine ,Breast cancer cells ,Lung cancer ,medicine.disease ,Biomedical engineering - Abstract
This paper proposes a preliminary investigation on the volatile production patterns generated from three sets of in-vitro cancerous cell samples of headspace that contains volatile organic compounds using the electronic nose system. A commercialized electronic nose consisting of 32 conducting polymer sensors (Cyranose 320) is used to analyze the three classes of signals which are lung cancer cells grown in media, breast cancer cells grown in media and the blank media (without cells). Neural Network (PNN) based classification technique is applied to investigate the performance of an electronic nose (E-nose) system for cancerous lung cell classification.
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- 2015
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5. Cancer detection using an electronic nose: A preliminary study on detection and discrimination of cancerous cells
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N.A. Hishamuddin, N. Yusuf, Mohammad Iqbal Omar, Reena Thriumani, Ali Yeon Md Shakaff, A. H. Adom, Yumi Zuhanis Has-Yun Hashim, Amanina Iymia Jeffree, Khaled Mohamed Helmy, Ammar Zakaria, and Latifah Munirah Kamarudin
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Pathology ,medicine.medical_specialty ,Electronic nose ,business.industry ,High mortality ,Cancer ,Cancer detection ,medicine.disease ,Cell culture ,medicine ,Biomarker (medicine) ,business ,Lung cancer ,Fetal bovine serum - Abstract
Lack of effective tools to diagnose lung cancer at an early stage has caused high mortality in cancer patients especially in lung cancer patients. Electronic nose (E-Nose) technology is believed to offer non-invasive, rapid and reliable analytic approach by measuring the odour released from cancer to assist medical diagnosis. In this work, using a commercial E-nose (Cyranose-320), we aimed to detect the volatile organic compounds (VOCs) emitted by different types of cancerous cells. The lung cancer cell (A549) and breast cancer cell (MCF-7) were used for this study. Both cells were cultured using Dulbecco's Modified Eagle's Medium (DMEM) with 10% of Fetal Bovine Serum (FBS) and incubated for three days. The static headspace of cell cultures and blank medium were directly sniffed by Cyranose-320. The preliminary results from this study showed that, the E-nose is able to detect and distinguish the presence of VOCs in cancerous cells with accuracy of 100% using LDA. To this end, the VOCs emitted from cancerous cells can potentially used as biomarker.
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- 2014
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6. A preliminary study on in-vitro lung cancer detection using E-nose technology
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Khaled Mohamed Helmy, Mohammad Iqbal Omar, Amanina Iymia Jeffree, Ammar Zakaria, Ali Yeon Md Shakaff, N.A. Hishamuddin, Latifah Munirah Kamarudin, N. Yusuf, Yumi Zuhanis Has-Yun Hashim, Reena Thriumani, and A. H. Adom
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Electronic nose ,Chemistry ,Lung cancer cell line ,Cancer ,Nanotechnology ,medicine.disease ,Knn classifier ,medicine.anatomical_structure ,Breast cancer cell line ,Cancer cell ,medicine ,Lung cancer ,Nose ,Biomedical engineering - Abstract
The existing clinical diagnostics for lung cancer are mostly based on physics, biochemical and imaging techniques. The use of electronic nose (E-nose) system to detect volatile organic compounds (VOCs) in lung cancer cells or exhaled air breath of a patient is expected to be able to classify different volatile components leading to the diagnosis of lung cancer at an early stage. In this preliminary study, a commercialized E-nose consists of an array of 32 conducting polymer sensors (Cyranose 320) was used to detect and discriminate the VOCs emitted from cancer cells which is A549 (lung cancer cell line) between MCF7 (breast cancer cell line). Blank medium was used to obtain controlled value. The VOC profiles of each sample were characterized using a classification algorithm called k-Nearest Neighbors (KNN) to test and benchmark the performance of Enose in identifying VOCs of lung cancer from different cancer cell lines. The E-nose with KNN classifier was able to classify the VOCs of lung cancer cell with over 90% successful accuracy in 30 seconds. This study can conclude that e-nose is capable to rapidly discriminate volatile organic compounds of cancerous cells which generated during cell growth.
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- 2014
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7. Diagnosis of bacteria for diabetic foot infection using electronic nose technology
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Latifah Munirah Kamarudin, Maz Jamilah Masnan, Amizah Othman, N. Z. I. Zakaria, Ammar Zakaria, Ewe Juan Yeap, Mohammad Iqbal Omar, Mohd Sadek Yassin, Ali Yeon Md Shakaff, N. Yusuf, and Azian Azamimi Abdullah
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medicine.medical_specialty ,Foot infections ,Electronic nose ,biology ,business.industry ,medicine.disease ,biology.organism_classification ,Diabetic foot ,Surgery ,Patient diagnosis ,medicine ,business ,Intensive care medicine ,Bacteria ,Conventional technique - Abstract
Foot infections may lead to serious complications if failed to detect at an early stage; especially for diabetic patients. It is necessary to develop an easy and reliable method to identify and classify the causative bacteria from the wound to assist health care practitioners. Therefore, this study proposed an alternative to the conventional technique by using an electronic nose with 32 matrices of non-specific conducting polymer sensors known as Cyranose320. A novel odour detection method is developed and targeted for microbial bacteria causing infection on diabetic foot using direct injection of static headspace. The bacteria are obtained from the clinical specimens by swabbing technique and isolated in a blood agar medium to verify the performance of the bacterial specialized medium. Various classification algorithm techniques proved that each bacteria produce certain characteristic of odour and can be used as a surrogate bio-marker. Thus, preliminary results from this study show that the electronic nose is able to identify and classify the presence of causative bacteria with high success rate of over 90% in diabetic foot infection.
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- 2013
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8. In-vitro diagnosis of single and poly microbial species targeted for diabetic foot infection using e-nose technology
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Norasmadi Abdul Rahim, Ammar Zakaria, Ali Yeon Md Shakaff, Nur Zawatil Isqi Zakaria, Nurlisa Yusuf, Maz Jamilah Masnan, Mohammad Iqbal Omar, Mohd Sadek Yasin, Azian Azamimi Abdullah, Amizah Othman, and Latifah Munirah Kamarudin
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food.ingredient ,Microbiological culture ,Support Vector Machine ,Computational biology ,Biosensing Techniques ,Biology ,In Vitro Techniques ,Bioinformatics ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,food ,Structural Biology ,medicine ,Agar ,Data Mining ,Humans ,Electronic Nose ,Molecular Biology ,Nose ,Electronic nose ,Bacteria ,Applied Mathematics ,Discriminant Analysis ,Effective management ,medicine.disease ,Antimicrobial ,Linear discriminant analysis ,Diabetic foot ,Diabetic Foot ,Computer Science Applications ,medicine.anatomical_structure ,Odorants ,Neural Networks, Computer ,Algorithms ,Research Article - Abstract
Background Effective management of patients with diabetic foot infection is a crucial concern. A delay in prescribing appropriate antimicrobial agent can lead to amputation or life threatening complications. Thus, this electronic nose (e-nose) technique will provide a diagnostic tool that will allow for rapid and accurate identification of a pathogen. Results This study investigates the performance of e-nose technique performing direct measurement of static headspace with algorithm and data interpretations which was validated by Headspace SPME-GC-MS, to determine the causative bacteria responsible for diabetic foot infection. The study was proposed to complement the wound swabbing method for bacterial culture and to serve as a rapid screening tool for bacteria species identification. The investigation focused on both single and poly microbial subjected to different agar media cultures. A multi-class technique was applied including statistical approaches such as Support Vector Machine (SVM), K Nearest Neighbor (KNN), Linear Discriminant Analysis (LDA) as well as neural networks called Probability Neural Network (PNN). Most of classifiers successfully identified poly and single microbial species with up to 90% accuracy. Conclusions The results obtained from this study showed that the e-nose was able to identify and differentiate between poly and single microbial species comparable to the conventional clinical technique. It also indicates that even though poly and single bacterial species in different agar solution emit different headspace volatiles, they can still be discriminated and identified using multivariate techniques.
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