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Manure application is a source of pathogens to the environment. Through overland runoff and tile drainage, zoonotic pathogens can contaminate surface water and streambed sediment and could affect both wildlife and human health. This study examined the environmental occurrence of gene markers for livestock-related bacterial, protozoan, and viral pathogens and antibiotic resistance in surface waters within the South Fork Iowa River basin before and after periods of swine manure application on agricultural land. Increased concentrations of indicator bacteria after manure application exceeding Iowa's state bacteria water quality standards suggest that swine manure contributes to diminished water quality and may pose a risk to human health. Additionally, the occurrence of HEV and numerous bacterial pathogen genes for Escherichia coli, Enterococcus spp., Salmonella sp., and Staphylococcus aureus in both manure samples and in corresponding surface water following periods of manure application suggests a potential role for swine in the spreading of zoonotic pathogens to the surrounding environment. During this study, several zoonotic pathogens were detected including Shiga-toxin producing E. coli, Campylobacter jejuni, pathogenic enterococci, and S. aureus; all of which can pose mild to serious health risks to swine, humans, and other wildlife. This research provides the foundational understanding required for future assessment of the risk to environmental health from livestock-related zoonotic pathogen exposures in this region. This information could also be important for maintaining swine herd biosecurity and protecting the health of wildlife near swine facilities., Graphical abstract Image 1, Highlights • Assessment of manure application as a source of pathogens to the environment. • Overland runoff and tile drainage facilitates pathogen transport to surface waters. • Detected hepatitis E virus in surface water following manure application. • Increased pathogen gene detections and indicator bacteria concentrations post-manure. • Manure application can potentially impair water quality and environmental health.

Animal waste, stream water, and streambed sediment from 19 small (

Pharmaceutical contamination of contiguous groundwater is a substantial concern in wastewater-impacted streams, due to ubiquity in effluent, high aqueous mobility, designed bioactivity, and to effluent-driven hydraulic gradients. Wastewater treatment facility (WWTF) closures are rare environmental remediation events; offering unique insights into contaminant persistence, long-term wastewater impacts, and ecosystem recovery processes. The USGS conducted a combined pre/post-closure groundwater assessment adjacent to an effluent-impacted reach of Fourmile Creek, Ankeny, Iowa, USA. Higher surface-water concentrations, consistent surface-water to groundwater concentration gradients, and sustained groundwater detections tens of meters from the stream bank demonstrated the importance of WWTF effluent as the source of groundwater pharmaceuticals as well as the persistence of these contaminants under effluent-driven, pre-closure conditions. The number of analytes (110 total) detected in surface water decreased from 69 prior to closure down to 8 in the first post-closure sampling event approximately 30 d later, with a corresponding 2 order of magnitude decrease in the cumulative concentration of detected analytes. Post-closure cumulative concentrations of detected analytes were approximately 5 times higher in proximal groundwater than in surface water. About 40% of the 21 contaminants detected in a downstream groundwater transect immediately before WWTF closure exhibited rapid attenuation with estimated half-lives on the order of a few days; however, a comparable number exhibited no consistent attenuation during the year-long post-closure assessment. The results demonstrate the potential for effluent-impacted shallow groundwater systems to accumulate pharmaceutical contaminants and serve as long-term residual sources, further increasing the risk of adverse ecological effects in groundwater and the near-stream ecosystem.

The objective of this study was to compare fecal indicator bacteria (FIB) (fecal coliforms, Escherichia coli [EC], and enterococci [ENT]) concentrations with a wide array of typical organic wastewater chemicals and selected bacterial genes as indicators of fecal pollution in water samples collected at or near 18 surface water drinking water intakes. Genes tested included esp (indicating human-pathogenic ENT) and nine genes associated with various animal sources of shiga-toxin-producing EC (STEC). Fecal pollution was indicated by genes and/or chemicals for 14 of the 18 tested samples, with little relation to FIB standards. Of 13 samples with

A simple screening method was developed to detect in situ biosurfactant production by exploiting the relationship between surface tension (ST) and surfactant concentration. Filtered groundwater from contaminated wells with ST values of 60 to 70 dynes/cm decreased to 29 dynes/cm after being concentrated 10 to 15 times in a rotary evaporator, indicating that biosurfactants in the sample reached the critical micelle concentration (CMC). Samples from uncon-taminated groundwater concentrated 25 times showed no decrease in ST below 72 dynes/cm, suggesting that biosurfactants were not present. Microorganisms from soil cores were cultured on diesel fuel and identified using fatty acid methyl ester (FAME) analysis. Pseudomonas aeruginosa was found at very low numbers in uncontami-nated soil but was the dominant species in contaminated soil, indicating that hydrocarbon release impacted microbial diversity significantly. High-performance liquid chromatography (HPLC) was used to quantify rhamnolipids, biosurfactants ...

A soil core collected in a tidal freshwater marsh in the Waccamaw National Wildlife Refuge (Georgetown, SC) exuded a particularly strong odor of cow manure upon extrusion. In order to test for manure and determine its provenance, we carried out microbial source tracking using DNA markers for Bacteroides, a noncoliform, anaerobic bacterial group that represents a large proportion spectrum of the fecal population. Three core sections from 0–3 cm, 9–12 cm, and 30–33 cm were analyzed for the presence of Bacteroides. The ages of core sediments were estimated using 210Pb and 137Cs dating. All three core sections tested positive for Bacteroides DNA markers related to cow or deer feces. Because cow manure is stockpiled, used as fertilizer, and a source of direct contamination in the Great Pee Dee River/Winyah Bay watershed, it is very likely the source of the Bacteroides that was deposited on the marsh. The mid-points of the core sections were dated as follows: 0–3 cm, 2009; 9–12 cm, 1999, and 30–33 cm, 1961. The presence of Bacteroides at different depths/ages in the soil profile indicates that soils in tidal freshwater marshes are, at the least, capable of being short-term sinks for Bacteroides and, may have the potential to be long-term sinks of stable, naturalized populations.

The U.S. Geological Survey (USGS) sampled multiple stream sites across the St. Joseph and Galien River Basins to detect and quantify the herbicide atrazine using a field enzyme-linked immunosorbent assay (ELISA) triazine test. In May 2001, July 2001, April 2002, August 2002, August 2003 and September 2003, composite samples were collected across streams at USGS streamflow-gaging stations. Concentrations and instantaneous loading for atrazine sampled in stream water throughout the St. Joseph River and Galien River Basins in Michigan and Indiana ranged from nondetection (< 0.05 part per billion (ppb)) with an associated load less than 0.001 kilogram per day (kg/d) to 6 ppb and a maximum load of 10 kg/d. Atrazine concentrations were highest in May 2001 just after the planting season. The lowest concentration was found in April 2002 just before planting. Atrazine concentrations in streambed-sediment pore water were not spatially connected with atrazine concentrations in stream-water samples. This study showed that atrazine concentrations were elevated from May to July in the St. Joseph and Galien River Basins. At many sites, concentrations exceeded the level that has been shown to feminize frog populations (0.2 ppb). There were 8 sites where concentrations exceeded 0.2 ppb atrazine in May 2001 and July 2001.

[1] Bulk electrical conductivity of sediments during microbial mineralization of diesel was investigated in a mesoscale laboratory experiment consisting of biotic contaminated and uncontaminated columns. Population numbers of oil degrading microorganisms increased with a clear pattern of depth zonation within the contaminated column not observed in the uncontaminated column. Microbial community structure determined from ribosomal DNA intergenic spacer analysis showed a highly specialized microbial community in the contaminated column. The contaminated column showed temporal increases in bulk conductivity, dissolved inorganic carbon, and calcium, suggesting that the high bulk conductivity is due to enhanced mineral weathering from microbial activity. The greatest change in bulk conductivity occurred in sediments above the water table saturated with diesel. Variations in electrical conductivity magnitude and microbial populations and their depth distribution in the contaminated column are similar to field observations. The results of this study suggest that geophysical methodologies may potentially be used to investigate microbial activity.

The results of a field and laboratory investigation of unconsolidated sediments contaminated by petroleum hydrocarbons and undergoing natural biodegradation are presented. Fundamental to geophysical investigations of hydrocarbon impacted sediments is the assessment of how microbial degradational processes affect their geoelectrical response. Therefore, the primary goal of this study was to understand how microbially mediated processes in hydrocarbon impacted sediments influence the geoelectrical response of this impacted zone. The field and laboratory results showed higher bulk conductivity in sediments impacted by petroleum hydrocarbons. The impacted sediments also showed increased populations of alkane degrading microbes and elevated dissolved cations (e.g. Ca). The elevated cations in the contaminated sediments relative to uncontaminated sediments suggest enhanced mineral dissolution related to the microbial degradation of the hydrocarbon. Both the laboratory and field data showed the highest bulk conductivities occurring within zones impacted with the free-phase and residual phase hydrocarbon and not within the water saturated zone. A model using a simplified form of Archie's Law suggests highly elevated estimated pore water conductivities within this conductive zone (~4 to 6 times background bulk conductivity) for both the laboratory and field data. The similar results for hydrocarbon contaminated sediments in laboratory experiments and field settings suggest that the mechanism for the high bulk conductivity in the contaminated zone is related to the microbial metabolism of the hydrocarbon and the resulting geochemical alterations within the contaminated zone. This study demonstrates that the higher bulk conductivity measured by geoelectrical methods at hydrocarbon impacted sites may be in part related to the microbial mineralization of the hydrocarbon.