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Human activities and regional-scale climate variability drive changes in the ecology of coastal and marine ecosystems. Ecological restoration has emerged as a best-management practice to combat habitat degradation and restore lost ecological functions. However, relatively short project monitoring timeframes have limited our understanding of the effects of interannual climate cycles on water quality and restoration dynamics. We collected measurements on a 23-ha oyster reef constructed in the Gulf of Mexico to determine the relationship between El Niño Southern Oscillation (ENSO)-driven climate variability and local salinity patterns, and to evaluate the effects of this climate variability and salinity on oyster population dynamics and faunal community composition over a medium-term (five-year) timeframe. The role of ENSO-driven climate variability on local salinity patterns (primarily from changes in precipitation and evaporation) and faunal dynamics was investigated using the Oceanic Niño Index (ONI). Salinity was negatively correlated with ONI with an approximately 4-month lag. Higher ONI values (El Niño periods) were followed by reductions in salinity, increases in oyster recruitment and density, and reductions in resident motile fauna density and species richness. Lower ONI values (La Niña periods) had higher and less variable salinities, and higher areal coverage of restoration substrates by large oysters. ENSO-driven salinity reductions in the second year after reef construction coincided with a shift in resident motile faunal community composition that was maintained despite a second strong salinity reduction in year 5. Our results indicate that it is important to expand the typical monitoring timeframes to at least five years so that resource managers and restoration practitioners can better understand how both short-term environmental variability and longer-term climate cycles can affect the outcomes of restoration actions.

Biogenic reefs provide important ecological functions and services to coastal and marine environments, supplying high levels of biodiversity, providing refuge and foraging habitat, and supporting fisheries. Serpulid reefs are a relatively uncommon habitat in coastal ecosystems globally that provide habitat for a diverse community of organisms, and have become a target for conservation and management efforts due to habitat degradation and loss. Baffin Bay, Texas, USA, is known for exceptionally productive commercial and recreational fisheries that are thought to be supported by Serpulid reef benthic macrofauna, particularly during regular periods of hypersalinity. This study compared the functioning of Serpulid reef habitats with nearby soft sediment areas using quantitative faunal and food web analyses. Serpulid reefs support a unique benthic macrofaunal community with 191 times greater abundance, 97 times greater biomass, and twice the number of species than in soft sediments. In contrast to soft-sediment macrofauna, Serpulid reef macrofaunal abundance and biomass were not correlated with any measured water quality variables. Isotope compositions of both suspension and deposit-feeding macrofauna from both habitats (i.e., Serpulid reefs and soft sediments) were close to organic matter from the sediment, demonstrating connectivity and the importance of primary production in the sediment to both habitat types. Abundant macrofauna inhabiting Serpulid reefs likely serve as an important food source for sport fish and other higher trophic-level fauna, particularly in hypersaline periods when soft-sediment macrobenthic food resources are scarce. Given the substantial loss of Baffin Bay’s Serpulid reef habitat compared to historic levels, conservation actions may be warranted to protect and restore Serpulid habitat and food resources. The results of this study can be used to increase the success of such efforts.

An increase in oyster aquaculture as a sustainable method of shellfish production is one response to overharvest and degradation of natural oyster reefs over the past century. Successful aquaculture production requires determining the environmental conditions optimal for oyster growth. In this study, the salinity, temperature, chlorophyll a concentration and the growth of Crassostrea virginica were monitored at four locations within the Mission-Aransas Estuary, Texas (USA), a shallow subtropical estuary influenced by relatively low freshwater inflow. Mean growth of the oyster shell (0.205 mm d–1 and 0.203 g d–1) and soft tissues (3.447 mg d–1) was highest when salinity was low (mean = 15.5) and chlorophyll a concentration was high (8.4 μg l–1). Oyster growth also varied temporally with periods of spawning. In low-inflow estuaries such as the Mission-Aransas Estuary, oyster farms should be sited close to river mouths so that oysters can benefit from freshwater inflows and lower salinities.

Quantifying and comparing stocks of oysters (Crassostrea virginica) within and among estuaries across the Gulf of Mexico is difficult because the sampling equipment used is either inconsistent among studies, or inefficient. In Texas, USA, stock assessments of oyster populations are made using an oyster dredge, which is an inefficient sampling tool. We compared sampling densities estimated by oyster dredges with more accurate estimates taken by diver-quadrat samples to determine a dredge efficiency rate. Our calculated efficiency rate (0.125) was negatively affected by the number of dead oysters, and the number and volume of total oysters in an area, but not affected by sediment grain size, water quality, and other oyster metrics. The dredge efficiency rate calculated in this study can be applied to past and future dredge-collected oyster quantity data to provide more realistic estimates of oyster densities and allow more accurate stock assessments and comparisons among studies and regions.

Understanding the effects of freshwater inflow on estuarine fish habitat use is critical to the sustainable management of many coastal fisheries. The Baffin Bay Complex (BBC) of south Texas is typically a reverse estuary (i.e., salinity increases upstream) that has supported many recreational and commercial fisheries. In 2012, a large proportion of black drum (Pogonias cromis) landed by fishers were emaciated, leading to concerns about the health of this estuary. In response to this event and lacking data on black drum spatial dynamics, a 2-year acoustic telemetry study was implemented to monitor individual-based movement and seasonal distribution patterns. Coupled with simultaneous water quality monitoring, the relationship between environmental variables and fish movement was assessed under reverse and “classical” estuary conditions. Acoustic monitoring data suggested that the BBC represents an important habitat for black drum; individuals exhibited site fidelity to the system and were present for much of the year. However, under reverse estuary conditions, fish summertime distribution was constrained to the interior of the BBC, where food resources are limited (based on recent benthic sampling), with little evidence of movement across the system. Out of eight environmental variables used to model fish movement using multiple linear regression, the only significant variable was salinity, which exhibited a negative relationship with movement rate. These findings suggest that prolonged periods of hypersalinity, which are detrimental to other euryhaline species due to increased osmoregulatory costs, reduce black drum distribution patterns and can limit the species’ access to benthic habitats supporting abundant prey resources.

The eastern oyster, Crassostrea virginica, provides critical ecosystem services and supports valuable fishery and aquaculture industries in northern Gulf of Mexico (nGoM) subtropical estuaries where it is grown subtidally. Its upper critical thermal limit is not well defined, especially when combined with extreme salinities. The cumulative mortalities of the progenies of wild C. virginica from four nGoM estuaries differing in mean annual salinity, acclimated to low (4.0), moderate (20.0), and high (36.0) salinities at 28.9 °C (84 °F) and exposed to increasing target temperatures of 33.3 °C (92 °F), 35.6 °C (96 °F) or 37.8 °C (100 °F), were measured over a three-week period. Oysters of all stocks were the most sensitive to increasing temperatures at low salinity, dying quicker (i.e., lower median lethal time, LT50) than at the moderate and high salinities and resulting in high cumulative mortalities at all target temperatures. Oysters of all stocks at moderate salinity died the slowest with high cumulative mortalities only at the two highest temperatures. The F1 oysters from the more southern and hypersaline Upper Laguna Madre estuary were generally more tolerant to prolonged higher temperatures (higher LT50) than stocks originating from lower salinity estuaries, most notably at the highest salinity. Using the measured temperatures oysters were exposed to, 3-day median lethal Celsius degrees (LD50) were estimated for each stock at each salinity. The lowest 3-day LD50 (35.1–36.0 °C) for all stocks was calculated at a salinity of 4.0, while the highest 3-day LD50 (40.1–44.0 °C) was calculated at a salinity of 20.0.

Improved waste management at McMurdo Station, Antarctica beginning in the 1980s has been followed by decreases in polycyclic aromatic hydrocarbon (PAH) and metal contamination in the adjacent marine sediments. However, determining the effect of the decreased contamination on marine ecological indicators (macrobenthic fauna) is confounded by concurrent changes in climate cycles and other physical forces. Between 2000 and 2013, there was a decrease in concentrations of some contaminants including mercury, copper, organochlorines, and PAHs in marine sediments adjacent to McMurdo Station. PAH concentrations in Winter Quarters Bay decreased an order of magnitude from 2000/2003 to 2012/2013 and were within an order of magnitude of reference area concentrations by 2013. Macrobenthic communities did not indicate any sign of recovery and have not become more similar to reference communities over this same period of time. Temporal changes in macrobenthic community composition during the study period had higher correlations with climatic and sea ice dynamics than with changes in contaminant concentrations. The Interdecadal Pacific Oscillation climatic index had the highest correlation with macrobenthic community composition. The Antarctic Oscillation climatic index, maximum ice extent and other natural environmental factors also appear to influence macrobenthic community composition. Despite large improvements in environmental management at McMurdo Station, continuing environmental vigilance is necessary before any noticeable improvement in ecological systems is likely to occur. The effects of climate must be considered when determining temporal changes in anthropogenic effects in Antarctica. Maintaining long-term monitoring of both contaminants and ecological indicators is important for determining the localized and global influences of humans on Antarctica, which will have implications for the whole planet.

The goal of the present study was to identify the potential changes in ecosystem service values provided by wetlands in Galveston Bay, Texas, USA, under the Intergovernmental Panel on Climate Change (IPCC) A1B max (0.69 m) sea level rise scenario. Built exclusively upon the output produced during the Sea Level Affecting Marshes Model 6 (SLAMM 6) exercise for the Galveston Bay region, this study showed that fresh marsh and salt marsh present a steady decline from 2009 (initial condition) to 2100. Fresh marsh was projected to undergo the biggest changes, with the loss of approximately 21% of its extent between 2009 and 2100 under the A1B max scenario. The percentages of change for salt marsh were less prominent at approximately 12%. This trend was also shown in the values of selected ecosystem services (disturbance regulation, waste regulation, recreation, and aesthetics) provided by these habitats. An ordinary least squares regression was used to calculate the monetary value of the selected ecosystem services provided by salt marsh and fresh marsh in 2009, and in 2050 and 2100 under the A1B max scenario. The value of the selected services showed potential monetary losses in excess of US$40 million annually in 2100, compared to 2009 for fresh marsh and more than $11 million for salt marsh. The estimates provided here are only small portions of what can be lost due to the decrease in habitat extent, and they highlight the need for protecting not only built infrastructure but also natural resources from sea level rise. Integr Environ Assess Manag 2017;13:431-443. © 2016 SETAC.

Fossil fuel extraction in the Gulf of Mexico currently involves the use of approximately 2000 active oil and gas production platforms. These artificial structures provide a number of ecological functions including habitat provision for epibenthic invertebrates and production of food and refuge for a variety of fish species. To mitigate the loss of habitat when active platforms are decommissioned, Rigs-to-Reefs programs maintain existing communities by removing the upper 26 m of platform structure and converting upper and lower portions into artificial reefs. We examined the epibenthic communities of two standing platforms at 5 m and 30 m depths and three reefed platforms at 30 m depths. A combination of stable isotope and community analysis was used to assess the structure and food web functioning of epibenthic communities among these site-types. Reefed platforms (30 m) supported communities with similar food web structure as 5 m and 30 m standing platform communities. However, community composition in standing platform and reefed platform sites at 30 m differed from those of standing platform sites at 5 m depths. Results indicate that, although loss of shallow water habitat associated with platform reefing may diminish some aspects of biodiversity, reefed platforms support similar fundamental ecological functions as standing platforms in the Gulf of Mexico. Thus, the current reefing practice of removal of the upper 26 m of the structure does not substantially influence the functionality of these systems, and the retained structure maintains beneficial habitat for epibenthic communities.

More than four decades of alkalinity and pH data (late 1960s to 2010) from coastal bays along the northwestern Gulf of Mexico were analyzed for temporal changes across a climatic gradient of decreasing rainfall and freshwater inflow, from northeast to southwest. The majority (16 out of 27) of these bays (including coastal waters) showed a long-term reduction in alkalinity at a rate of 3.0-21.6 μM yr(-1). Twenty-two bays exhibited pH decreases at a rate of 0.0014-0.0180 yr(-1). In contrast, a northernmost coastal bay exhibited increases in both alkalinity and pH. Overall, the two rates showed a significant positive correlation, indicating that most of these bays, especially those at lower latitudes, have been experiencing long-term acidification. The observed alkalinity decrease may be caused by reduced riverine alkalinity export, a result of precipitation decline under drought conditions, and freshwater diversion for human consumption, as well as calcification in these bays. A decrease in alkalinity inventory and accompanying acidification may have negative impacts on shellfish production in these waters. In addition, subsequent reduction in alkalinity export from these bays to the adjacent coastal ocean may also decrease the buffer capacity of the latter against future acidification.

Crassostrea virginica (the Eastern or American oyster) bioaccumulates pollutants from the water column, and therefore, its tissues can be used as bioindicators of past and present estuarine health. In this pilot project, we decided to investigate whether its tissues would be a suitable medium for toxicity testing using tissues from a variety of southern Texas locations of known and suspected anthropogenically impacted and unimpacted areas. We also conducted toxicity tests on sediments adjacent to oyster reefs using standard protocols for sediment toxicity. We tested the toxicity of tissues and sediments on the luminescent bacteria Vibrio fischeri, whose bioassays are commonly referred to by the trade name Microtox®. Microtox tests are quick, relatively inexpensive and sensitive to a range of contaminants. Evidence from this preliminary study suggests that conducting toxicity tests on oyster tissues may predict localized contamination better than when conducting toxicity tests on subtidal sediment. The refinement of these methods to use oyster tissues to detect contamination may be especially useful for environmental impact studies and/or studies where rapid and inexpensive information is needed.

Habitat reconstruction is commonly employed to restore degraded estuarine habitats and lost ecological functions. In this study, we use a combination of stable isotope analyses and macrofauna community analysis to compare the ecological structure and function between a recently constructed Spartina alterniflora salt marsh and a natural reference habitat over a 2-year period. The restored marsh was successful in providing habitat for economically and ecologically important macrofauna taxa; supporting similar or greater density, biomass, and species richness to the natural reference during all but one sampling period. Stable isotope analyses revealed that communities from the natural and the restored marshes relied on a similar diversity of food resources and that decapods had similar trophic levels. However, some generalist consumers (Palaemonetes spp. and Penaeus aztecus) were more 13C-enriched in the natural marsh, indicating a greater use of macrophyte derived organic matter relative to restored marsh counterparts. This difference was attributed to the higher quantities of macrophyte detritus and organic carbon in natural marsh sediments. Reduced marsh flooding frequency was associated with a reduction in macrofaunal biomass and decapod trophic levels. The restored marsh edge occurred at lower elevations than natural marsh edge, apparently due to reduced fetch and wind-wave exposure provided by the protective berm structures. The lower elevation of the restored marsh edge mitigated negative impacts in sampling periods with low tidal elevations that affected the natural marsh. The results of this study highlight the importance of considering sediment characteristics and elevation in salt marsh constructions.

Ecological restoration has become a widely recognized tool to ameliorate the effects of habitat loss. Half Moon Reef, once a highly-productive 2 km2 Crassostrea virginica oyster reef in Matagorda Bay, Texas, was harvested to depletion in the early 20th century. In 2014, a 0.23 km2 reef complex was created using limestone and concrete substrates to restore oyster populations—one of the largest contiguous oyster reef restoration efforts in the U.S. In the three years post-construction, two large freshwater inflow events provided a unique opportunity to determine the effects of prolonged salinity reductions (

International audience; South Texas has a semi-arid climate with a large interannual variability of freshwater inflows. This study sought to define how changes in freshwater inflow affect the composition, quantity and quality of suspended particulate organic matter (SPOM) in a South Texas estuary: the Mission-Aransas estuary. The study was implemented 1.5 months after a large rain event in September 2010 and continued for 10 months of drought conditions. The composition of SPOM originating from rivers, the Gulf of Mexico and the estuary were determined using stable isotopes (δ 13 C, δ 15 N and δ 34 S). The quantity and quality of SPOM were assessed using organic carbon content, chlorophyll a concentrations and C/chl a ratios. Our results demonstrated that autochthonous phytoplankton was the dominant component of SPOM in the Mission-Aransas estuary during droughts. Benthic organic matter from local primary producers (i.e., seagrass, salt marsh plants, benthic microalgae) did not influence SPOM composition, either as fresh material or as detritus. A comparison with a positive estuary (i.e., Sabine-Neches estuary, TX) indicates that decreases in freshwater inflow may lead to decreases of terrestrial organic matter inputs and to increase the ratio of autochtonous phytoplanktonic material in SPOM. Highlights-Phytoplankton dominate particulate organic matter in the Mission-Aransas estuary.-Benthic organic matter does not influence particulate organic matter composition.-Organic matter drained by rivers during minor rain events is of very poor quality.

The aim of this study was to compare the impact of different freshwater inflow volumes on benthic communities and water column dynamics in different estuary classes. Benthic and water column spatial dynamics were contrasted in lagoons (with no direct inflow sources), tidal rivers that empty directly into the Gulf of Mexico, and bar-built bay systems (with direct inflow sources) along the Texas (USA) coast to determine the role of inflow in regulating ecosystem structure and function. Chlorophyll-a and nutrient concentrations were inversely correlated with salinity and were thus highest in the river systems, but lowest in lagoons. All Texas estuary types studied have conservative mixing for silicate and ammonium but are sinks for nitrite plus nitrate and phosphate. Macrobenthic production (abundance and biomass) was lowest in rivers and highest in lagoons. Diversity was low in estuaries with salinities between 1 and 17, but increased with salinities of up to 30, before decreasing in hypersaline conditions. Macrofaunal community structure divided the estuaries into two groups. The first group represented polyhaline communities and contained lagoons (East Matagorda, Matagorda, Christmas, and South Bays). The second group represented oligo-mesohaline community characteristics and contained the secondary bays (Lavaca Bay and Cedar Lakes) and rivers (San Bernard River, Brazos River, and the Rio Grande). The implications of these results for managing freshwater flows is that altered hydrology can change the character of estuarine systems regardless of their classification as bays, lagoons, or tidal rivers.

Freshwater inflow is an important source of physical variability in estuaries. Effects of water flow are dynamic, and it is impossible to sample all conditions as they vary over space and time. Benthos, however, are fixed in place, continuously sample the overlying water conditions, and demonstrate a variety of consistent responses to multiple sources of stress. Benthic indices of biotic integrity (BIBIs) have been particularly useful for assessing aquatic systems. However most indices have focused on assessing effects related to changes in water quality rather than water quantity. This study develops a Freshwater Inflow Biotic Index (FIBI) to determine how changes in freshwater inflow affect benthic populations, which in turn reflect the ecological condition of an estuary. Based on benthic succession theory and long-term data, 12 biotic metrics were chosen that characterized benthic community structure in response to inflow regimes. The metrics were ranked and then reduced to one variable using principal...

Suspension-feeding activities of oysters impart a potentially significant benefit to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass, and primary productivity which can have a significant impact on human well-being. This study considered nitrogen regulation by eastern oysters Crassostrea virginica in the Mission-Aransas Estuary, Texas, USA, as a function of denitrification, burial, and physical transport from the system via harvest. Oyster reefs were estimated to remove 502.5 kg N km(-2) through denitrification of biodeposits and 251.3 kg N km(-2) in burial of biodeposits to sediments. Nitrogen is also physically transported out of the estuary via harvest of oysters. Commercial harvest of oysters in the Mission-Aransas Estuary can remove approximately 21,665 kg N per year via physical transport from the system. We developed a transferable method to value the service of nitrogen regulation by oysters, where the potential cost equivalent value of nitrogen regulation is quantified via cost estimates for a constructed biological nutrient removal (BNR) supplement to a wastewater treatment plant. The potential annual engineered cost equivalent of the service of nitrogen regulation and removal provided by reefs in the Mission-Aransas Estuary is $293,993 yr(-1). Monetizing ecosystem services can help increase awareness at the stakeholder level of the importance of oysters beyond commercial fishery values alone.

An estuary is a semienclosed coastal body of water, which has a free connection with the open sea and within which, sea water is measurably diluted with fresh water from land drainage (Pritchard 1967). Most estuaries have a series of landscape subcomponents: a river (or fresh water) source, a tidal-estuarine segment, marshes (or mangroves depending on latitude), bays, and a pass (or inlet) to the sea. However, all estuaries are quite different; the landscape of each subcomponent can vary, combinations and connections of these subcomponents can vary, and some subcomponents can be missing. The interaction of three primary natural forces causes estuaries to be unique and different.

At this point in time, there is no question as to whether freshwater inflow is important to coastal ecosystems. Rather, the important questions are how, when, where, and in what quantities inflow should be used for environmental purposes.

Oyster reefs are one of the most threatened marine habitats on earth, with habitat loss resulting from water quality degradation, coastal development, destructive fishing practices, overfishing, and storm impacts. For successful and sustainable oyster reef restoration efforts, it is necessary to choose sites that support long-term growth and survival of oysters. Selection of suitable sites is critically important as it can greatly influence mortality factors and may largely determine the ultimate success of the restoration project. The application of Geographic Information Systems (GIS) provides an effective methodology for identifying suitable sites for oyster reef restoration and removes much of the uncertainty involved in the sometimes trial and error selection process. This approach also provides an objective and quantitative tool for planning future oyster reef restoration efforts. The aim of this study was to develop a restoration suitability index model and reef quality index model to characterize locations based on their potential for successful reef restoration within the Mission-Aransas Estuary, Texas, USA. The restoration suitability index model focuses on salinity, temperature, turbidity, dissolved oxygen, and depth, while the reef quality index model focuses on abundance of live oysters, dead shell, and spat. Size-specific Perkinsus marinus infection levels were mapped to illustrate general disease trends. This application was effective in identifying suitable sites for oyster reef restoration, is flexible in its use, and provides a mechanism for considering alternative approaches. The end product is a practical decision-support tool that can be used by coastal resource managers to improve oyster restoration efforts. As oyster reef restoration activities continue at small and large-scales, site selection criteria are critical for assisting stakeholders and managers and for maximizing long-term sustainability of oyster resources.