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Biogenic reefs provide important ecological functions and services to coastal and marine environments, supplying high levels of biodiversity, providing refuge and foraging habitat, and supporting fisheries. Serpulid reefs are a relatively uncommon habitat in coastal ecosystems globally that provide habitat for a diverse community of organisms, and have become a target for conservation and management efforts due to habitat degradation and loss. Baffin Bay, Texas, USA, is known for exceptionally productive commercial and recreational fisheries that are thought to be supported by Serpulid reef benthic macrofauna, particularly during regular periods of hypersalinity. This study compared the functioning of Serpulid reef habitats with nearby soft sediment areas using quantitative faunal and food web analyses. Serpulid reefs support a unique benthic macrofaunal community with 191 times greater abundance, 97 times greater biomass, and twice the number of species than in soft sediments. In contrast to soft-sediment macrofauna, Serpulid reef macrofaunal abundance and biomass were not correlated with any measured water quality variables. Isotope compositions of both suspension and deposit-feeding macrofauna from both habitats (i.e., Serpulid reefs and soft sediments) were close to organic matter from the sediment, demonstrating connectivity and the importance of primary production in the sediment to both habitat types. Abundant macrofauna inhabiting Serpulid reefs likely serve as an important food source for sport fish and other higher trophic-level fauna, particularly in hypersaline periods when soft-sediment macrobenthic food resources are scarce. Given the substantial loss of Baffin Bay’s Serpulid reef habitat compared to historic levels, conservation actions may be warranted to protect and restore Serpulid habitat and food resources. The results of this study can be used to increase the success of such efforts.

The eastern oyster, Crassostrea virginica, is a foundation species within US Gulf of Mexico (GoM) estuaries that has experienced substantial population declines. As changes from management and climate are expected to continue to impact estuarine salinity, understanding how local oyster populations might respond and identifying populations with adaptations to more extreme changes in salinity could inform resource management, including restoration and aquaculture programs. Wild oysters were collected from four estuarine sites from Texas [Packery Channel (PC): 35.5, annual mean salinity, Aransas Bay (AB): 23.0] and Louisiana [Calcasieu Lake (CL): 16.2, Vermilion Bay (VB): 7.4] and spawned. The progeny were compared in field and laboratory studies under different salinity regimes. For the field study, F1 oysters were deployed at low (6.4) and intermediate (16.5) salinity sites in Alabama. Growth and mortality were measured monthly. Condition index and Perkinsus marinus infection intensity were measured quarterly. For the laboratory studies, mortality was recorded in F1 oysters that were exposed to salinities of 2.0, 4.0, 20.0/22.0, 38.0 and 44.0 with and without acclimation. The results of the field study and laboratory study with acclimation indicated that PC oysters are adapted to high-salinity conditions and do not tolerate very low salinities. The AB stock had the highest plasticity as it performed as well as the PC stock at high salinities and as well as Louisiana stocks at the lowest salinity. Louisiana stocks did not perform as well as the Texas stocks at high salinities. Results from the laboratory studies without salinity acclimation showed that all F1 stocks experiencing rapid mortality at low salinities when 3-month oysters collected at a salinity of 24 were used and at both low and high salinities when 7-month oysters collected at a salinity of 14.5 were used.

An increase in oyster aquaculture as a sustainable method of shellfish production is one response to overharvest and degradation of natural oyster reefs over the past century. Successful aquaculture production requires determining the environmental conditions optimal for oyster growth. In this study, the salinity, temperature, chlorophyll a concentration and the growth of Crassostrea virginica were monitored at four locations within the Mission-Aransas Estuary, Texas (USA), a shallow subtropical estuary influenced by relatively low freshwater inflow. Mean growth of the oyster shell (0.205 mm d–1 and 0.203 g d–1) and soft tissues (3.447 mg d–1) was highest when salinity was low (mean = 15.5) and chlorophyll a concentration was high (8.4 μg l–1). Oyster growth also varied temporally with periods of spawning. In low-inflow estuaries such as the Mission-Aransas Estuary, oyster farms should be sited close to river mouths so that oysters can benefit from freshwater inflows and lower salinities.

Oyster reef restoration has become a principal strategy for ameliorating the loss of natural Crassostrea virginica populations and increasing habitat provision. In 2014, a large‐scale, high‐relief, 23‐ha subtidal C. virginica reef was restored at the historically productive Half Moon Reef in Matagorda Bay, TX, using concrete and limestone substrates. Encrusting and motile fauna were sampled seasonally until 17 months postrestoration at the restored reef and at adjacent unrestored sites. Restored oysters developed rapidly and were most abundant 3 months postrestoration, with subsequent declines possibly due to interacting effects of larval settlement success on new substrate versus post‐settlement mortality due to competitors and predators. Oyster densities were 2× higher than in a restored oyster population in Chesapeake Bay that was reported to be the largest reestablished metapopulation of native oysters in the world. Resident fauna on the restored reef were 62% more diverse, had 433% greater biomass, and comprised a distinct faunal community compared to unrestored sites. The presence of three‐dimensional habitat was the most important factor determining resident faunal community composition, indicating that substrate limitation is a major hindrance for oyster reef community success in Texas and other parts of the Gulf of Mexico. There were only minor differences in density, biomass, and diversity of associated fauna located adjacent (13 m) versus distant (150 m) to the restored reef. The two substrate types compared had little influence on oyster recruitment or faunal habitat provision. Results support the use of reef restoration as a productive means to rebuild habitat and facilitate faunal enhancement.

Oyster reefs are important foundational habitats and provide many ecosystem services. A century of habitat degradation has resulted in substantial reductions in the extent and quality of oyster reefs in many estuaries, thus spurring restoration efforts. In this study, a 1.5 ha oyster reef complex was constructed in Copano Bay, Texas to restore habitat for oysters and associated fauna. Oysters and resident and transient fishes and crustaceans were monitored at the restored reef as well as at nearby natural oyster reef and unrestored bottom (i.e., dense mud with shell hash) habitats for two years following reef construction. The restored reef had substantial oyster recruitment and growth, with oyster abundance and size comparable to nearby habitats within the first year. Resident and transient fauna communities recruited to the restored reef within six months post-construction, and abundance and diversity were comparable to nearby habitats. Significant changes observed in oyster densities between the first and second year post-restoration demonstrate the importance of monitoring over multiple years to capture multiple recruitment cycles and growth to market size. Nekton densities did not change significantly after the first year, but changes in community assemblages were observed through the end of the study. The high densities of oysters and resident nekton relative to other studies indicate that this restoration project was successful in restoring suitable habitat. The design of the reef complex, consisting of relatively high-relief reef mounds and deeper corridors, likely contributed to the relatively high oyster and nekton densities observed in this study. Overall, the restored reef in this study showed tremendous near-term success in providing important ecological functions associated with habitat provision and oyster production.

The Baffin Bay estuary is a hypersaline system in the Gulf of Mexico that supports an important recreational and commercial fishery for black drum Pogonias cromis, a benthic predator. Seasonal measurements of water quality variables, benthic macrofauna densities and biomass, and determination of P. cromis food sources using stomach-content and stable-isotope analyses were carried out to determine how P. cromis food sources change with water quality and how this may affect P. cromis diet. Gut-content analysis indicated P. cromis selectively consumed bivalves Mulinia lateralis and Anomalocardia auberiana. Isotope compositions demonstrated that P. cromis relied on these benthic food resources produced in the Baffin Bay estuary year-round. Biomass and densities of these bivalves were influenced by changes in water quality variables, particularly salinity and dissolved oxygen. Thus, this paper demonstrates the relationship between water quality variables, benthic macrofauna, and their use as food resources by a carnivorous fish species, and emphasizes the need for integrated assessments when studying the effects of water quality on ecosystem function. Holistic approaches such as these can provide important information for management and conservation of fishery resources and can improve predictions of ecosystem response to climate variability.

Recently, greater interest in the resilience of coastal habitat ecosystem services in the northern Gulf of Mexico has emerged due in part to an expansion of mangroves into areas previously dominated by salt marshes. To operationalize coastal wetland ecosystem services for decision-making, there is a need to clarify how salt marshes and mangroves function in this region. The goal of this research is to operationalize blue carbon (carbon stored in coastal habitats) within the Mission-Aransas National Estuarine Research Reserve, TX by documenting what we know about blue carbon within the study area, identifying data gaps and future research needs, and using available knowledge to inform management and decision-making within the Reserve. Our research shows that there is a lack of data within the Reserve on mangrove aboveground biomass, belowground biomass and soil carbon and on salt marsh soil carbon. There is also a dearth of information on wetland carbon sequestration and emission rates within the Reserve, making it challenging to inform management and develop a market for blue carbon.

Recent research revealing the extent of marine habitat degradation has ignited a surge of restoration efforts globally. Restoration of estuarine habitats became a priority in the United States with the Estuary Restoration Act (ERA) of 2000. In the present study, a synthesis of data from the National Estuaries Restoration Inventory (NERI), developed in response to ERA requirements to track and disseminate project data, was conducted in order to analyze U.S. oyster reef restoration efforts. From 2000–2011, more than $45 million was invested in 187 projects to restore over 150 ha of oyster reef habitat, with projects most heavily concentrated in the Chesapeake Bay area and Florida Gulf coast. Trends over time indicate that projects are being implemented at larger scales, increasing from an average of less than 0.4 ha in 2000 to over 1 ha on average in 2011. Costs per unit decreased from an average of more than $2.1 million per ha in 2000 to just over $500,000 per ha in 2011. However, our analysis confirms one major problem hindering the field of restoration ecology: a lack of monitoring data or project-specific assessments of success. Habitat restoration has become an increasingly common effort in the policy sector, and gaps identified through this analysis can help inform future policy making and implementation. Better facilitation of data dissemination and further research on economies of scale in restoration projects are two key areas for improvement. As the field of restoration ecology continues to grow, it is critical that both new and current restoration practitioners, scientists, and decision-makers are able to learn from past projects and apply that collective knowledge to future restoration efforts.

Understanding the effects of freshwater inflow on estuarine fish habitat use is critical to the sustainable management of many coastal fisheries. The Baffin Bay Complex (BBC) of south Texas is typically a reverse estuary (i.e., salinity increases upstream) that has supported many recreational and commercial fisheries. In 2012, a large proportion of black drum (Pogonias cromis) landed by fishers were emaciated, leading to concerns about the health of this estuary. In response to this event and lacking data on black drum spatial dynamics, a 2-year acoustic telemetry study was implemented to monitor individual-based movement and seasonal distribution patterns. Coupled with simultaneous water quality monitoring, the relationship between environmental variables and fish movement was assessed under reverse and “classical” estuary conditions. Acoustic monitoring data suggested that the BBC represents an important habitat for black drum; individuals exhibited site fidelity to the system and were present for much of the year. However, under reverse estuary conditions, fish summertime distribution was constrained to the interior of the BBC, where food resources are limited (based on recent benthic sampling), with little evidence of movement across the system. Out of eight environmental variables used to model fish movement using multiple linear regression, the only significant variable was salinity, which exhibited a negative relationship with movement rate. These findings suggest that prolonged periods of hypersalinity, which are detrimental to other euryhaline species due to increased osmoregulatory costs, reduce black drum distribution patterns and can limit the species’ access to benthic habitats supporting abundant prey resources.

Quantifying and comparing stocks of oysters (Crassostrea virginica) within and among estuaries across the Gulf of Mexico is difficult because the sampling equipment used is either inconsistent among studies, or inefficient. In Texas, USA, stock assessments of oyster populations are made using an oyster dredge, which is an inefficient sampling tool. We compared sampling densities estimated by oyster dredges with more accurate estimates taken by diver-quadrat samples to determine a dredge efficiency rate. Our calculated efficiency rate (0.125) was negatively affected by the number of dead oysters, and the number and volume of total oysters in an area, but not affected by sediment grain size, water quality, and other oyster metrics. The dredge efficiency rate calculated in this study can be applied to past and future dredge-collected oyster quantity data to provide more realistic estimates of oyster densities and allow more accurate stock assessments and comparisons among studies and regions.

The eastern oyster, Crassostrea virginica, provides critical ecosystem services and supports valuable fishery and aquaculture industries in northern Gulf of Mexico (nGoM) subtropical estuaries where it is grown subtidally. Its upper critical thermal limit is not well defined, especially when combined with extreme salinities. The cumulative mortalities of the progenies of wild C. virginica from four nGoM estuaries differing in mean annual salinity, acclimated to low (4.0), moderate (20.0), and high (36.0) salinities at 28.9 °C (84 °F) and exposed to increasing target temperatures of 33.3 °C (92 °F), 35.6 °C (96 °F) or 37.8 °C (100 °F), were measured over a three-week period. Oysters of all stocks were the most sensitive to increasing temperatures at low salinity, dying quicker (i.e., lower median lethal time, LT50) than at the moderate and high salinities and resulting in high cumulative mortalities at all target temperatures. Oysters of all stocks at moderate salinity died the slowest with high cumulative mortalities only at the two highest temperatures. The F1 oysters from the more southern and hypersaline Upper Laguna Madre estuary were generally more tolerant to prolonged higher temperatures (higher LT50) than stocks originating from lower salinity estuaries, most notably at the highest salinity. Using the measured temperatures oysters were exposed to, 3-day median lethal Celsius degrees (LD50) were estimated for each stock at each salinity. The lowest 3-day LD50 (35.1–36.0 °C) for all stocks was calculated at a salinity of 4.0, while the highest 3-day LD50 (40.1–44.0 °C) was calculated at a salinity of 20.0.

A limited supply of oyster shell for restoration practices has prompted investigations of alternative substrates used in construction of artificial oyster reefs. The success of oyster reef restoration projects is increasingly focused not only on oyster densities, but also on habitat provisioning for associated fauna. A subtidal oyster reef complex (0.24 km2) was restored in the Mission-Aransas Estuary, Texas, U.S.A., in July 2013 using replicated mounds of concrete, limestone, river rock, and oyster shell substrates. Oyster and reef-associated fauna characteristics were quantified quarterly for 15 months, using sampling trays that were deployed 3 months after construction. The highest densities of oyster spat occurred 9 months after tray deployment (July 2014, 1,264/m2), whereas juvenile oyster densities increased throughout the study period to 283/m2. Concrete (1,022/m2) and limestone (939/m2) supported the highest number of oysters over all dates. Oyster shell (1,533/m2) and concrete (1,047/m2) substrates supported the highest densities of associated motile fauna. Faunal diversity (Hill's N1) did not vary by substrate material, but did show seasonal variation. A simple benefit–cost ratio was used to indicate the localized monetary value for each of the substrates. Oyster shell and concrete substrates returned the highest benefit–cost ratio for motile fauna, while concrete yielded the highest benefit–cost ratio for oyster abundance. Incorporating benefit–cost ratios in restoration planning will allow practitioners to better integrate substrate-specific ecological values with economic considerations and project goals to maximize return on restoration investments.

More than four decades of alkalinity and pH data (late 1960s to 2010) from coastal bays along the northwestern Gulf of Mexico were analyzed for temporal changes across a climatic gradient of decreasing rainfall and freshwater inflow, from northeast to southwest. The majority (16 out of 27) of these bays (including coastal waters) showed a long-term reduction in alkalinity at a rate of 3.0-21.6 μM yr(-1). Twenty-two bays exhibited pH decreases at a rate of 0.0014-0.0180 yr(-1). In contrast, a northernmost coastal bay exhibited increases in both alkalinity and pH. Overall, the two rates showed a significant positive correlation, indicating that most of these bays, especially those at lower latitudes, have been experiencing long-term acidification. The observed alkalinity decrease may be caused by reduced riverine alkalinity export, a result of precipitation decline under drought conditions, and freshwater diversion for human consumption, as well as calcification in these bays. A decrease in alkalinity inventory and accompanying acidification may have negative impacts on shellfish production in these waters. In addition, subsequent reduction in alkalinity export from these bays to the adjacent coastal ocean may also decrease the buffer capacity of the latter against future acidification.

Eastern oysters (Crassostrea virginica) in Gulf of Mexico estuaries create complex reefs and provide important habitat for fish and crustaceans. Oyster reefs have suffered historic losses due to overharvest, disease, and degraded water quality, and recent efforts have focused on restoring reefs to benefit nekton populations. Oyster shell is the preferred substrate for oyster reef restoration, but as a consequence of its limited supply, a variety of alternative substrates are being used. We used field experiments to quantify the effects of substrate type (concrete, porcelain, limestone, river rock, and oyster shell) on oyster recruitment, growth, and nekton habitat use in St. Charles Bay, TX. After 4 months, oyster spat recruitment density, nekton density and community structure were similar across substrate types—and analogous to those on natural reefs—but differed from samples collected on bare sediment. To determine refuge value of the alternative substrates, we tested mud crab (Panopeidae) prey mortality with and pinfish (Lagodon rhomboides) or blue crab (Callinectes sapidus) predators. Prey mortality was similar across substrate types for both predators, and was significantly lower than no substrate and bare sand controls. Alternative substrates can provide important structural materials to support the development of oyster populations and nekton assemblages, and may be used to promote sustainable management of oyster reef resources via restoration.

Characterizing density patterns of fish and crustaceans across estuarine habitat types can provide useful information regarding their relative value. The oyster reef complex within Sabine Lake Estuary is the largest known in the United States with no record of commercial harvest, and it presents a unique opportunity to understand the habitat value of an unfished reef system in comparison with adjacent estuarine habitats. High abundances of relatively large oysters with complex formations were observed throughout the 2-y study period. Average densities of fish and crustaceans were 6 times greater at the marsh edge than the nonvegetated shallow habitats, and 40 times greater than both the oyster reef and nonvegetated deep habitats. Low faunal densities observed in the oyster reef habitat may be the result of spatial configuration and connectivity to surrounding habitats, collection limitation resulting from its large vertical relief (>1 m) and complex 3-dimensional structure, or habitat selection resulting from water depth. Because the majority of crustaceans and resident and transient fish were observed within the marsh edge and nonvegetated shallow habitats, it is difficult to determine whether oyster reefs within Sabine Lake Estuary provide essential habitats for these species. Although low densities of organisms were observed in the oyster reef habitat, multivariate analysis indicates that the unfished reef supports a unique community of fish and crustaceans. Results provide a valuable baseline for future conservation, restoration, and management actions as we seek to understand more completely and to protect important estuarine habitat types.

Ecological restoration has become a widely recognized tool to ameliorate the effects of habitat loss. Half Moon Reef, once a highly-productive 2 km2 Crassostrea virginica oyster reef in Matagorda Bay, Texas, was harvested to depletion in the early 20th century. In 2014, a 0.23 km2 reef complex was created using limestone and concrete substrates to restore oyster populations—one of the largest contiguous oyster reef restoration efforts in the U.S. In the three years post-construction, two large freshwater inflow events provided a unique opportunity to determine the effects of prolonged salinity reductions (

The aim of this study was to compare the impact of different freshwater inflow volumes on benthic communities and water column dynamics in different estuary classes. Benthic and water column spatial dynamics were contrasted in lagoons (with no direct inflow sources), tidal rivers that empty directly into the Gulf of Mexico, and bar-built bay systems (with direct inflow sources) along the Texas (USA) coast to determine the role of inflow in regulating ecosystem structure and function. Chlorophyll-a and nutrient concentrations were inversely correlated with salinity and were thus highest in the river systems, but lowest in lagoons. All Texas estuary types studied have conservative mixing for silicate and ammonium but are sinks for nitrite plus nitrate and phosphate. Macrobenthic production (abundance and biomass) was lowest in rivers and highest in lagoons. Diversity was low in estuaries with salinities between 1 and 17, but increased with salinities of up to 30, before decreasing in hypersaline conditions. Macrofaunal community structure divided the estuaries into two groups. The first group represented polyhaline communities and contained lagoons (East Matagorda, Matagorda, Christmas, and South Bays). The second group represented oligo-mesohaline community characteristics and contained the secondary bays (Lavaca Bay and Cedar Lakes) and rivers (San Bernard River, Brazos River, and the Rio Grande). The implications of these results for managing freshwater flows is that altered hydrology can change the character of estuarine systems regardless of their classification as bays, lagoons, or tidal rivers.

A 2-year period with flood versus drought conditions provided the opportunity to examine the effects of flood disturbance on subtidal eastern oyster Crassostrea virginica biology and population dynamics in a south Texas estuary. Oysters were sampled monthly in 2007 and 2008 to examine the impacts of changing environmental conditions on oyster populations. Oysters were also examined quarterly for the presence of Perkinsus marinus. Filtration rates were calculated as a function of oyster size, temperature, salinity, and total suspended solids. Flood events in 2007 caused temporary reductions in salinity and were associated with reductions in oyster abundance, spat settlement, disease levels (weighted prevalence and percent infection), and filtration rates. Oyster populations had generally recovered within 1 year’s time—the oysters were younger and smaller but were just as abundant as pre-flood levels. The rapid return of oysters to pre-flood abundance levels is attributed in part to the ability of oysters in Gulf coast estuaries to spawn multiple times in a single season and in part to their relatively high growth rates. Although flood disturbance may temporarily reduce or destroy oyster populations, the ability of the Mission–Aransas Estuary to retain freshwater pulses within the system and maintain low salinities that are unfavorable for predators and disease can facilitate oyster population recovery. Episodic flood events appear to play a critical role in promoting long-term oyster population maintenance in the Mission–Aransas Estuary. The response of oysters to changing environmental conditions over the short term provides some insights into the potential long-term effects of changing climate.

International audience; South Texas has a semi-arid climate with a large interannual variability of freshwater inflows. This study sought to define how changes in freshwater inflow affect the composition, quantity and quality of suspended particulate organic matter (SPOM) in a South Texas estuary: the Mission-Aransas estuary. The study was implemented 1.5 months after a large rain event in September 2010 and continued for 10 months of drought conditions. The composition of SPOM originating from rivers, the Gulf of Mexico and the estuary were determined using stable isotopes (δ 13 C, δ 15 N and δ 34 S). The quantity and quality of SPOM were assessed using organic carbon content, chlorophyll a concentrations and C/chl a ratios. Our results demonstrated that autochthonous phytoplankton was the dominant component of SPOM in the Mission-Aransas estuary during droughts. Benthic organic matter from local primary producers (i.e., seagrass, salt marsh plants, benthic microalgae) did not influence SPOM composition, either as fresh material or as detritus. A comparison with a positive estuary (i.e., Sabine-Neches estuary, TX) indicates that decreases in freshwater inflow may lead to decreases of terrestrial organic matter inputs and to increase the ratio of autochtonous phytoplanktonic material in SPOM. Highlights-Phytoplankton dominate particulate organic matter in the Mission-Aransas estuary.-Benthic organic matter does not influence particulate organic matter composition.-Organic matter drained by rivers during minor rain events is of very poor quality.

Suspension-feeding activities of oysters impart a potentially significant benefit to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass, and primary productivity which can have a significant impact on human well-being. This study considered nitrogen regulation by eastern oysters Crassostrea virginica in the Mission-Aransas Estuary, Texas, USA, as a function of denitrification, burial, and physical transport from the system via harvest. Oyster reefs were estimated to remove 502.5 kg N km(-2) through denitrification of biodeposits and 251.3 kg N km(-2) in burial of biodeposits to sediments. Nitrogen is also physically transported out of the estuary via harvest of oysters. Commercial harvest of oysters in the Mission-Aransas Estuary can remove approximately 21,665 kg N per year via physical transport from the system. We developed a transferable method to value the service of nitrogen regulation by oysters, where the potential cost equivalent value of nitrogen regulation is quantified via cost estimates for a constructed biological nutrient removal (BNR) supplement to a wastewater treatment plant. The potential annual engineered cost equivalent of the service of nitrogen regulation and removal provided by reefs in the Mission-Aransas Estuary is $293,993 yr(-1). Monetizing ecosystem services can help increase awareness at the stakeholder level of the importance of oysters beyond commercial fishery values alone.

An estuary is a semienclosed coastal body of water, which has a free connection with the open sea and within which, sea water is measurably diluted with fresh water from land drainage (Pritchard 1967). Most estuaries have a series of landscape subcomponents: a river (or fresh water) source, a tidal-estuarine segment, marshes (or mangroves depending on latitude), bays, and a pass (or inlet) to the sea. However, all estuaries are quite different; the landscape of each subcomponent can vary, combinations and connections of these subcomponents can vary, and some subcomponents can be missing. The interaction of three primary natural forces causes estuaries to be unique and different.