1. Quantitative genetic parameters for growth and wood properties in Eucalyptus 'urograndis' hybrid using near-infrared phenotyping and genome-wide SNP-based relationships
- Author
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Orzenil B. Silva-Junior, Bruno Marco de Lima, Shawn D. Mansfield, Carla Garcia, Dario Grattapaglia, Eduardo P. Cappa, BRUNO MARCO DE LIMA, USP, EDUARDO P. CAPPA, INSTITUTO NACIONAL DE TECNOLOGI´A AGROPECUARIA (INTA), ARGENTINA, ORZENIL BONFIM DA SILVA JUNIOR, Cenargen, CARLA GARCIA, INTERNATIONAL PAPER DO BRASIL ROD, SHAWN D. MANSFIELD, UNIVERSITY OF BRITISH COLUMBIA, CANADA, and DARIO GRATTAPAGLIA, Cenargen.
- Subjects
0106 biological sciences ,0301 basic medicine ,Heredity ,Plant Science ,01 natural sciences ,Lignin ,Trees ,Spectrum Analysis Techniques ,NEAR-INFRARED PEHNOTYPING ,Data Management ,education.field_of_study ,Eucalyptus ,Multidisciplinary ,Spectroscopy, Near-Infrared ,Organic Compounds ,Plant Anatomy ,Eukaryota ,near-Infrared Spectroscopy ,Phylogenetic Analysis ,Genomics ,Plants ,Wood ,Phylogenetics ,Polimorfismo de un Solo Nucleótido ,Chemistry ,Phenotypes ,Phenotype ,Genetic gain ,Physical Sciences ,Medicine ,Brazil ,Genome, Plant ,Research Article ,Genetic Research ,Computer and Information Sciences ,Genética Cuantitativa ,Genotype ,Science ,Population ,Infrared Spectroscopy ,Quantitative trait locus ,Biology ,Research and Analysis Methods ,Polymorphism, Single Nucleotide ,Quantitative Genetics ,03 medical and health sciences ,Quantitative Trait, Heritable ,MOLECULAR RELATIONSHIP ,Species Specificity ,Genetic variation ,Genetics ,Evolutionary Systematics ,PEDIGREE RELATIONSHIP ,education ,Cellulose ,Fenotipos ,Hybrid ,Taxonomy ,Evolutionary Biology ,Models, Genetic ,Directional selection ,Organic Chemistry ,Organisms ,Chemical Compounds ,Biology and Life Sciences ,Heritability ,purl.org/becyt/ford/4.5 [https] ,Plant Breeding ,030104 developmental biology ,Evolutionary biology ,Single Nucleotide Polymorphism ,Tree breeding ,Hybridization, Genetic ,purl.org/becyt/ford/4 [https] ,010606 plant biology & botany - Abstract
A thorough understanding of the heritability, genetic correlations and additive and non-additive variance components of tree growth and wood properties is a requisite for effective tree breeding. This knowledge is essential to maximize genetic gain, that is, the amount of increase in trait performance achieved annually through directional selection. Understanding the genetic attributes of traits targeted by breeding is also important to sustain decade-long genetic progress, that is, the progress made by increasing the average genetic value of the offspring as compared to that of the parental generation. In this study, we report quantitative genetic parameters for fifteen growth, wood chemical and physical traits for the world-famous Eucalyptus urograndis hybrid (E. grandis × E. urophylla). These traits directly impact the optimal use of wood for cellulose pulp, paper, and energy production. A population of 1,000 trees sampled in a progeny trial was phenotyped directly or following the development and use of near-infrared spectroscopy calibration models. Trees were genotyped with 33,398 SNPs and 24,001 DArT-seq genome-wide markers and genomic realized relationship matrices (GRM) were used for parameter estimation with an individual-tree additive-dominant mixed model. Wood chemical properties and wood density showed stronger genetic control than growth, cellulose and fiber traits. Additive effects are the main drivers of genetic variation for all traits, but dominance plays an equally or more important role for growth, singularly in this hybrid. GRM´s with >10,000 markers provided stable relationships estimates and more accurate parameters than pedigrees by capturing the full genetic relationships among individuals and disentangling the non-additive from the additive genetic component. Low correlations between growth and wood properties indicate that simultaneous selection for wood traits can be applied with minor effects on genetic gain for growth. Conversely, moderate to strong correlations between wood density and chemical traits exist, likely due to their interdependency on cell wall structure such that responses to selection will be connected for these traits. Our results illustrate the advantage of using genomewide marker data to inform tree breeding in general and have important consequences for operational breeding of eucalypt urograndis hybrids. Fil: de Lima, Bruno Marco. Universidade de Sao Paulo; Brasil. Ministerio da Agricultura Pecuaria e Abastecimento de Brasil. Empresa Brasileira de Pesquisa Agropecuaria; Brasil Fil: Cappa, Eduardo Pablo. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación de Recursos Naturales. Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Silva Junior, Orzenil B.. Ministerio da Agricultura Pecuaria e Abastecimento de Brasil. Empresa Brasileira de Pesquisa Agropecuaria; Brasil. Universidade Católica de Brasília; Brasil Fil: Garcia, Carla. No especifíca; Fil: Mansfield, Shawn D.. University of British Columbia; Canadá Fil: Grattapaglia, Dario. Ministerio da Agricultura Pecuaria e Abastecimento de Brasil. Empresa Brasileira de Pesquisa Agropecuaria; Brasil. Universidade Católica de Brasília; Brasil
- Published
- 2019