1. Exome sequencing and targeted analysis identifies the genetic basis of disease in over 50% of patients with a wide range of ataxia-related phenotypes
- Author
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Sun, Miao, Johnson, Amy Knight, Nelakuditi, Viswateja, Guidugli, Lucia, Fischer, David, Arndt, Kelly, Ma, Lan, Sandford, Erin, Shakkottai, Vikram, Boycott, Kym, Chardon, Jodi Warman, Li, Zejuan, del Gaudio, Daniela, Burmeister, Margit, Waggoner, Darrel J., Gomez, Christopher M., and Das, Soma
- Subjects
Adult ,Aged, 80 and over ,Male ,Canada ,Adolescent ,Sequence Analysis, DNA ,Middle Aged ,Article ,Young Adult ,Phenotype ,Child, Preschool ,Mutation ,Exome Sequencing ,Humans ,Ataxia ,Exome ,Female ,Genetic Predisposition to Disease ,Child ,Aged - Abstract
PURPOSE: To examine the impact of an exome sequencing-based approach for the molecular diagnosis of patients nationwide with a wide range of ataxia-related phenotypes. METHODS: One hundred and seventy patients with ataxia of unknown etiology referred from clinics throughout the United States and Canada were studied by exome sequencing. Patients ranged in age from 2 to 88 years. Analysis was focused on 441-curated genes associated with ataxia and ataxia-like conditions. RESULTS: Pathogenic and suspected diagnostic variants were identified in 88 of the 170 patients, providing a positive molecular diagnostic rate of 52%. Forty-six different genes were implicated, with the six most commonly mutated genes being SPG7, SYNE1, ADCK3, CACNA1A, ATP1A3 and SPTBN2, which accounted for >40% of the positive cases. In many cases a diagnosis was provided for conditions that were not suspected and resulted in the broadening of the clinical spectrum of several conditions. CONCLUSION: Exome sequencing with targeted analysis provides a high yield approach for the genetic diagnosis of ataxia-related conditions. This is the largest exome-based sequencing study performed to date in patients with ataxia and ataxia-like conditions and represents patients with a wide range of ataxia phenotypes typically encountered in neurology and genetics clinics.
- Published
- 2018