1. [Association analysis of polymorphisms of metabolizing enzyme genes with chronic benzene poisoning based on logistic regression and multifactor dimensionality reduction]
- Author
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Ru-Feng, Jin, Jun-Xiang, Wan, Shou-Yong, Gu, Pin, Sun, Zhong-Bin, Zhang, Xi-Peng, Jin, and Zhao-Lin, Xia
- Subjects
Adult ,Epoxide Hydrolases ,Male ,Multifactor Dimensionality Reduction ,Genotype ,Benzene ,Cytochrome P-450 CYP2E1 ,Middle Aged ,Polymorphism, Single Nucleotide ,Young Adult ,Logistic Models ,Cytochrome P-450 CYP2D6 ,Case-Control Studies ,Occupational Exposure ,Cytochrome P-450 CYP1A1 ,Humans ,Female ,Gene-Environment Interaction ,Genetic Predisposition to Disease - Abstract
To explore the association of polymorphisms of metabolizing enzyme genes with chronic benzene poisoning (CBP) comprehensively by case-control design.152 CBP patients and 152 workers occupationally exposed to benzene without poisoning manifestations were investigated. 30 single nucleotide polymorphisms (SNPs) in 13 genes such as CYP2E1 were tested by PCR-RFLP, sequencing approaches. Logistic regression model was used to detect main effects and 2-order interaction effects of gene and/or environment. Multifactor dimensionality reduction (MDR) was used to detect high-order gene-gene or gene-environment interactions.Based on logistic regression, the main effects of GSTP1 rs947894, EPHX1 rs1051740, CYP1A1 rs4646903, CYP2D6 rs1065852 and rs1135840 were found to be significant (P0.05) while the confounding factors of sex, cigarette smoking, alcohol consumption and the intensity of benzene exposure were controlled. EPHX1 rs1051740 might be associated with CBP (P = 0.06). There existed 3 types of interactions were as followed: interactions of GSTP1 rs947894 with alcohol consumption, CYP2E1 rs3813867 with EPHX1 rs3738047, EPHX1 rs3738047 with alcohol consumption(P0.05), while the main effects of CYP2E1 rs3813867 and EPHX1 rs3738047 were not significant (P0.05). The other SNPs did not show any significant associations with CBP. According to MDR, a 3-order interaction with the strongest combined effect was found, i.e. the 3-factor combination of CYP1A1 rs4646903, CYP2D6 rs1065852 and CYP2D6 rs1135840.Gene-gene, gene-environment interactions are important mechanism to genetic susceptibility of CBP.
- Published
- 2012