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Drivers of phytoplankton and zooplankton dynamics vary spatially and temporally in estuaries due to variation in hydrodynamic exchange and residence time, complicating efforts to understand controls on food web productivity. We conducted approximately monthly (2012–2019; n = 74) longitudinal sampling at 10 fixed stations along a freshwater tidal terminal channel in the San Francisco Estuary, California, characterized by seaward to landward gradients in water residence time, turbidity, nutrient concentrations, and plankton community composition. We used multivariate autoregressive state space (MARSS) models to quantify environmental (abiotic) and biotic controls on phytoplankton and mesozooplankton biomass. The importance of specific abiotic drivers (e.g., water temperature, turbidity, nutrients) and trophic interactions differed significantly among hydrodynamic exchange zones with different mean residence times. Abiotic drivers explained more variation in phytoplankton and zooplankton dynamics than a model including only trophic interactions, but individual phytoplankton–zooplankton interactions explained more variation than individual abiotic drivers. Interactions between zooplankton and phytoplankton were strongest in landward reaches with the longest residence times and the highest zooplankton biomass. Interactions between cryptophytes and both copepods and cladocerans were stronger than interactions between bacillariophytes (diatoms) and zooplankton taxa, despite contributing less biovolume in all but the most landward reaches. Our results demonstrate that trophic interactions and their relative strengths vary in a hydrodynamic context, contributing to food web heterogeneity within estuaries at spatial scales smaller than the freshwater to marine transition. [ABSTRACT FROM AUTHOR]

The impacts of wildfire smoke on lake habitats remains unclear. We determined the metabolic response to smoke in the epi‐pelagic and two littoral habitats in Castle Lake, California. We compared light regime, gross primary production, ecosystem respiration, and net ecosystem production in years with and without smoke. During the smoke period incident ultraviolet‐B (UV‐B) radiation and photosynthetically active radiation (PAR) decreased by 53% and 28%, respectively, while the water column extinction coefficient of UV‐B and PAR increased by 20% and 18% respectively. Epi‐pelagic productivity increased during smoke cover because of decreased solar inputs. PAR values remained sufficient to saturate productivity, suggesting observed differences were primarily the result of changes in UV‐B. Littoral‐benthic productivity did not change, possibly reflecting adaptation to high‐intensity UV‐B light in these habitats. Our results highlight the importance of understanding how prolonged wildfire smoke alters the amount of energy produced from specific habitats in lakes. Plain Language Summary: Large wildfires are increasing worldwide, but the impacts of wildfire smoke on lakes are unknown. We determined how photosynthetic activity and organism's respiration respond to smoke in the offshore and nearshore habitats in a mountain lake. Smoke limited the damage to algae caused by ultraviolet‐B radiation, resulting in increased offshore photosynthesis. Photosynthesis in the nearshore habitat did not change during smoke cover, possibly because organisms in shallow habitats have adapted to the higher intensity of damaging ultraviolet‐B radiation. Our results highlight the importance of understanding how prolonged smoke conditions can alter lakes' energy flows and food webs. Key Points: Wildfire smoke reduced ultraviolet‐B and photosynthetically active radiationLake habitats respond differently to changes in light from smoke, pelagic primary production increased with no change to littoral metabolismSmoke alters energy flows with implications for food web structure in lakes [ABSTRACT FROM AUTHOR]

The integration of lakes into watershed-scale energy budgets remains a major goal of aquatic ecosystem ecology. However, this enterprise has focused almost exclusively on temperate and boreal systems and on zooplankton as representatives of system-wide energy flow. We investigated the proportion of consumer biomass derived from terrestrial sources, allochthony, in three classes of high-elevation lakes—alpine, large and small montane—of varying geometry and watershed ecosystem development, and across five taxa, including macrobenthic invertebrates and fish. We used stable isotopes of carbon (13C:12C), nitrogen (15N:14N), and hydrogen (2H:1H) to fit a modular Bayesian mixing model, which estimated proportional assimilation of phytoplankton, algal periphyton, and terrestrial organic matter by each consumer. The stable isotope analysis was supplemented with a comparison of fatty acid profiles between consumers and producers, and with a Daphnia magna rearing study involving aquatic and terrestrial nutrient sources. The most probable estimate of allochthony across consumer taxa was 41% in small montane lakes (< 0.1 ha) with high terrestrial C loading. For large montane (3-11 ha) and alpine lakes (0.8-3 ha), with substantially less terrestrial influence, allochthony was just 4 and 3%, respectively. Allochthony was also lower on average for benthic grazers than for pelagic consumers. Our results corroborate previous findings that lake size, depth, and light penetration are dominant physical controls on allochthony, but add that it sharply declines at high elevation due to changes in terrestrial primary production near or above tree line. [ABSTRACT FROM AUTHOR]

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