1. Correlation of diet, microbiota and metabolite networks in inflammatory bowel disease
- Author
-
Yu Jing Bi, Su Zuan Chen, Li Sheng Wang, Yang Bai, Fa Chao Zhi, Hui Min Deng, Yi Jie Weng, Ya Jun Song, Yu Zhou, Yang Yang Liu, Rui Fu Yang, Ya Fang Tan, Ye Wang, Nan Qin, Zong Min Du, Yun Huang, Yan Ping Han, Zheng Chao Li, Huo Ye Gan, and Xiang Li
- Subjects
Adult ,Male ,medicine.drug_class ,Biopsy ,Metabolite ,Gut flora ,digestive system ,Inflammatory bowel disease ,Body Mass Index ,Microbiology ,Feces ,Food Preferences ,Young Adult ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Humans ,Intestinal Mucosa ,biology ,Bile acid ,business.industry ,Gastroenterology ,Middle Aged ,Inflammatory Bowel Diseases ,medicine.disease ,biology.organism_classification ,digestive system diseases ,Diet ,Gastrointestinal Microbiome ,Nutrition Assessment ,chemistry ,Case-Control Studies ,030220 oncology & carcinogenesis ,Dysbiosis ,Female ,030211 gastroenterology & hepatology ,Metagenomics ,Fusobacterium nucleatum ,Bacteroides fragilis ,business ,Metabolic Networks and Pathways ,Niacin - Abstract
Objectives Microbiota dysbiosis in inflammatory bowel disease (IBD) has been widely reported. The gut microbiota connect diet to the metabolism by producing small molecules via diverse metabolic pathways. In this study we aimed to investigate the dietary preferences of IBD patients, and to explore the interactions among gut microbiota composition, dietary components, and metabolites in relation to IBD. Methods Dietary preferences of IBD patients (including those with ulcerative colitis [UC] and Crohn's disease [CD]) and health controls were investigated, and their gut microbiota were analyzed using 16S rRNA gene sequencing and metagenomic analyses of fecal and biopsy samples. The metabolite profiles of the samples were then analyzed using gas and liquid chromatography-mass spectrometry analyses. Results The daily intake of folic acid, niacin, vitamins C and D, calcium, and selenium differed significantly between patients with IBD and healthy controls. A decrease in long-chain (such as arachidic, and oleic acid) and medium-chain fatty acids (sebacic acid and isocaproic acid) as well as bile acid was observed in patients with IBD. Compared with healthy controls, 22 microbial species (including Sulfolobus acidocaldarius, and Clostridium clostridioforme CAG132) in the UC group and 37 microbial species (such as Bacteroides fragilis and Fusobacterium nucleatum) in the CD group were found to be correlated to diet and metabolites. Bacteroides fragilis was enriched in patients with IBD and associated with multi-nutrients, and 21 metabolites including 25-hydroxyvitamin D3 and taurolithocholic acid. Conclusions This study provides an interaction network to identify key micronutrients, microbiota components and metabolites that contribute to IBD.
- Published
- 2019
- Full Text
- View/download PDF