77 results on '"Tatjana N. Parac-Vogt"'
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2. Versatile post-functionalisation strategy for the formation of modular organic–inorganic polyoxometalate hybrids
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David E. Salazar Marcano, Mhamad Aly Moussawi, Alexander V. Anyushin, Sarah Lentink, Luc Van Meervelt, Ivana Ivanović-Burmazović, and Tatjana N. Parac-Vogt
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SOLVENT ,Science & Technology ,Chemistry, Multidisciplinary ,COVALENT MODIFICATION ,General Chemistry ,DUMBBELL ,DRIVEN ,Chemistry ,Physical Sciences ,COMPLEXES ,LIGANDS ,SURFACE MODIFICATION ,OXIDES ,CLUSTERS ,BUILDING-BLOCKS - Abstract
Hybrid structures incorporating different organic and inorganic constituents are emerging as a very promising class of materials since they synergistically combine the complementary and diverse properties of the individual components. Hybrid materials based on polyoxometalate clusters (POMs) are particularly interesting due to their versatile catalytic, redox, electronic, and magnetic properties, yet the controlled incorporation of different clusters into a hybrid structure is challenging and has been scarcely reported. Herein we propose a novel and general strategy for combining multiple types of metal-oxo clusters in a single hybrid molecule. Two novel hybrid POM structures (HPOMs) bis-functionalised with dipentaerythritol (R-POM1-R; R = (OCH2)3CCH2OCH2C(CH2OH)) were synthesised as building-blocks for the formation of heterometallic hybrid triads (POM2-R-POM1-R-POM2). Such a modular approach resulted in the formation of four novel heterometallic hybrids combing the Lindqvist {V6}, Anderson-Evans {XMo6} (X = Cr or Al) and trisubstituted Wells-Dawson {P2V3W15} POM structures. Their formation was confirmed by multinuclear Nuclear Magnetic Resonance (NMR), infrared (IR) and UV-Vis spectroscopy, as well as Mass Spectrometry, Diffusion Ordered Spectroscopy (DOSY) and elemental analysis. The thermal stability of the hybrids was also examined by Thermogravimetric Analysis (TGA), which showed that the HPOM triads exhibit higher thermal stability than comparable hybrid structures containing only one type of POM. The one-pot synthesis of these novel compounds was achieved in high yields in aqueous and organic media under simple reflux conditions, without the need of any additives, and could be translated to create other hybrid materials based on a variety of metal-oxo cluster building-blocks. ispartof: CHEMICAL SCIENCE vol:13 issue:10 pages:2891-2899 ispartof: location:England status: published
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- 2022
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3. Rational Synthesis of Elusive Organic-Inorganic Hybrid Metal-oxo Clusters: Formation and Post-functionalization of Hexavanadates
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David E. Salazar Marcano, Givi Kalandia, Mhamad Aly Moussawi, Kristof Van Hecke, and Tatjana N. Parac-Vogt
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General Chemistry - Abstract
Paving the way towards new functional materials relies increasingly on the challenging task of forming organic-inorganic hybrid compounds. In that regard, discrete atomically-precise metal-oxo nanoclusters have received increasing attention due to the wide range of organic moieties that can be grafted onto them through functionalization reactions. The Lindqvist hexavanadate family of clusters, such as [V6O13{(OCH2)3C-R}2]2- (V6-R), is particularly interesting due to the magnetic, redox, and catalytic properties of these clusters. However, compared to other metal-oxo cluster types, V6-R clusters have been less extensively explored, which is mainly due to poorly understood synthetic challenges and the limited number of viable post-functionalization strategies. In this work, we present an in-depth investigation of the factors that influence the formation of hybrid hexavanadates (V6-R HPOMs) and leverage this knowledge to develop [V6O13{(OCH2)3CNHCOCH2Cl}2]2- (V6-Cl) as a new and tunable platform for the facile formation of discrete hybrid structures based on metal-oxo clusters in relatively high yields. Moreover, we showcase the versatility of the V6-Cl platform through its post-functionalization via nucleophilic substitution with various carboxylic acids of differing complexity and with functionalities that are relevant in multiple disciplines, such as supramolecular chemistry and biochemistry. Hence, V6-Cl was shown to be a straightforward and versatile starting point for the formation of functional supramolecular structures or other hybrid materials, thereby enabling their exploration in various fields. ispartof: CHEMICAL SCIENCE vol:14 issue:20 pages:5405-5414 ispartof: location:England status: published
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- 2023
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4. Regioselective protein oxidative cleavage enabled by enzyme-like recognition of an inorganic metal oxo cluster ligand
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Shorok A. M. Abdelhameed, Francisco de Azambuja, Tamara Vasović, Nada D. Savić, Tanja Ćirković Veličković, and Tatjana N. Parac-Vogt
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Multidisciplinary ,Biocatalysis ,General Physics and Astronomy ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology ,Bioinorganic chemistry - Abstract
Oxidative modifications of proteins are key to many applications in biotechnology. Metal-catalyzed oxidation reactions efficiently oxidize proteins but with low selectivity, and are highly dependent on the protein surface residues to direct the reaction. Herein, we demonstrate that discrete inorganic ligands such as polyoxometalates enable an efficient and selective protein oxidative cleavage. In the presence of ascorbate (1 mM), the Cu-substituted polyoxometalate K8[Cu2+(H2O)(α2-P2W17O61)], (CuIIWD, 0.05 mM) selectively cleave hen egg white lysozyme under physiological conditions (pH =7.5, 37 °C) producing only four bands in the gel electropherogram (12.7, 11, 10, and 5 kDa). Liquid chromatography/mass spectrometry analysis reveals a regioselective cleavage in the vicinity of crystallographic CuIIWD/lysozyme interaction sites. Mechanistically, polyoxometalate is critical to position the Cu at the protein surface and limit the generation of oxidative species to the proximity of binding sites. Ultimately, this study outlines the potential of discrete, designable metal oxo clusters as catalysts for the selective modification of proteins through radical mechanisms under non-denaturing conditions.
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- 2023
5. Enhancing the Catalytic Activity of MOF‐808 Towards Peptide Bond Hydrolysis through Synthetic Modulations
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Francisco de Azambuja, Tatjana N. Parac-Vogt, and Charlotte Simms
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Glycylglycine ,Chemistry ,Ligand ,Hydrolysis ,fungi ,Organic Chemistry ,Temperature ,Substrate (chemistry) ,General Chemistry ,Combinatorial chemistry ,Catalysis ,Metal ,chemistry.chemical_compound ,visual_art ,visual_art.visual_art_medium ,Peptide bond ,Reactivity (chemistry) ,Metal-organic framework ,Particle Size ,Peptides - Abstract
The performance of MOFs in catalysis is largely derived from structural features, and much work has focused on introducing structural changes such as defects or ligand functionalisation to boost the reactivity of the MOF. However, the effects of different parameters chosen for the synthesis on the catalytic reactivity of the resulting MOF remains poorly understood. Here, we evaluate the role of metal precursor on the reactivity of Zr-based MOF-808 towards hydrolysis of the peptide bond in the glycylglycine model substrate. In addition, the effect of synthesis temperature and duration has been investigated. Surprisingly, the metal precursor was found to have a large influence on the reactivity of the MOF, surpassing the effect of particle size or number of defects. Additionally, we show that by careful selection of the Zr-salt precursor and temperature used in MOF syntheses, equally active MOF catalysts could be obtained after a 20 minute synthesis compared to 24 h synthesis. ispartof: CHEMISTRY-A EUROPEAN JOURNAL vol:27 issue:68 pages:17230-17239 ispartof: location:Germany status: published
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- 2021
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6. Monodispersed MOF-808 Nanocrystals Synthesized via a Scalable Room-Temperature Approach for Efficient Heterogeneous Peptide Bond Hydrolysis
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Christian Serre, Iurii Dovgaliuk, Gilles Patriarche, Antoine Tissot, Tatjana N. Parac-Vogt, Charlotte Simms, Shan Dai, Institut des Matériaux Poreux de Paris (IMAP ), Département de Chimie - ENS Paris, École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC)-Ecole Superieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris), and Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)
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Materials science ,General Chemical Engineering ,[CHIM.CATA]Chemical Sciences/Catalysis ,[CHIM.MATE]Chemical Sciences/Material chemistry ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,Hydrolysis ,Nanocrystal ,Materials Chemistry ,Peptide bond ,0210 nano-technology ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
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- 2021
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7. En Route to a Heterogeneous Catalytic Direct Peptide Bond Formation by Zr-Based Metal–Organic Framework Catalysts
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Tatjana N. Parac-Vogt, Alexandra Loosen, Dragan Conic, Maxime van den Besselaar, Jeremy N. Harvey, and Francisco de Azambuja
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Chemistry ,Peptide bond ,Metal-organic framework ,General Chemistry ,Combinatorial chemistry ,Catalysis - Abstract
The catalytic activity of Zr6-based metal–organic frameworks (Zr-MOFs) toward peptide bond formation is investigated using dipeptide cyclization as a model reaction. Unlike previous catalysts, Zr-MOFs largely tolerate water, reactions are carried out under ambient conditions, the catalyst is recyclable and no additives to activate the COOH group are necessary. The reaction mechanism was assessed by detailed mechanistic and computational studies and features a Lewis acid activation of carboxylate groups by Zr centers toward amine addition in which an alkoxy ligand on adjacent Zr sites assists in lowering the barrier of key proton transfers. The proposed concepts were also used to study the formation of intermolecular peptide bond formation. ispartof: ACS CATALYSIS vol:11 issue:13 pages:7647-7658 status: published
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- 2021
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8. Shape and Size Complementarity-Induced Formation of Supramolecular Protein Assemblies with Metal-Oxo Clusters
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Luc Van Meervelt, L. Vandebroek, Hiroki Noguchi, Tatjana N. Parac-Vogt, Kenichi Kamata, Jeremy R. H. Tame, and Arnout Voet
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010405 organic chemistry ,Chemistry ,Supramolecular chemistry ,Nanotechnology ,General Chemistry ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Metal ,Complementarity (molecular biology) ,visual_art ,visual_art.visual_art_medium ,General Materials Science - Abstract
The controlled formation of protein supramolecular assemblies is challenging, but it could provide an important route for the development of hybrid biomaterials. In this work, we demonstrate the fo...
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- 2021
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9. Interplay between structural parameters and reactivity of Zr6-based MOFs as artificial proteases
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Tatjana N. Parac-Vogt, Jens Moons, Dirk De Vos, Charlotte Simms, Simon Smolders, Francisco de Azambuja, and Alexandra Loosen
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PEPTIDE-BOND HYDROLYSIS ,PROTEINS ,Chemistry, Multidisciplinary ,SELECTIVE HYDROLYSIS ,010402 general chemistry ,01 natural sciences ,Catalysis ,Chemical kinetics ,METAL-ORGANIC FRAMEWORKS ,chemistry.chemical_compound ,Hydrolysis ,Computational chemistry ,Peptide bond ,Reactivity (chemistry) ,chemistry.chemical_classification ,Science & Technology ,Dipeptide ,010405 organic chemistry ,Biomolecule ,fungi ,General Chemistry ,DEGRADATION ,0104 chemical sciences ,Chemistry ,Energy profile ,chemistry ,Physical Sciences ,RESIDUES - Abstract
Structural parameters influencing the reactivity of metal-organic frameworks (MOF) are challenging to establish. However, understanding their effect is crucial to further develop their catalytic potential. Here, we uncovered a correlation between reaction kinetics and the morphological structure of MOF-nanozymes using the hydrolysis of a dipeptide under physiological pH as model reaction. Comparison of the activation parameters in the presence of NU-1000 with those observed with MOF-808 revealed the reaction outcome is largely governed by the Zr6 cluster. Additionally, its structural environment completely changes the energy profile of the hydrolysis step, resulting in a higher energy barrier ΔG ‡ for NU-1000 due to a much larger ΔS ‡ term. The reactivity of NU-1000 towards a hen egg white lysozyme protein under physiological pH was also evaluated, and the results pointed to a selective cleavage at only 3 peptide bonds. This showcases the potential of Zr-MOFs to be developed into heterogeneous catalysts for non-enzymatic but selective transformation of biomolecules, which are crucial for many modern applications in biotechnology and proteomics. ispartof: CHEMICAL SCIENCE vol:11 issue:26 pages:6662-6669 ispartof: location:England status: published
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- 2020
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10. Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry
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Jeremy R. H. Tame, L. Vandebroek, Tatjana N. Parac-Vogt, Kenichi Kamata, Hiroki Noguchi, Luc Van Meervelt, and Arnout Voet
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Materials science ,Matching (graph theory) ,Molecular Conformation ,Metals and Alloys ,Proteins ,Cerium ,General Chemistry ,Crystal structure ,Calorimetry ,Tungsten Compounds ,Crystallography, X-Ray ,Catalysis ,Symmetry (physics) ,Molecular conformation ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Crystallography ,Coordination Complexes ,Materials Chemistry ,Ceramics and Composites ,Hybrid material ,Ultracentrifugation ,Protein Binding - Abstract
Novel bioinorganic hybrid materials based on proteins and inorganic clusters have enormous potential for the development of hybrid catalysts that synergistically combine properties of both materials. Here we report the creation of hybrid assemblies between a computationally designed symmetrical protein Pizza6-S and different polyoxometalates with matching symmetry: the tellurotungstic Anderson-Evans (Na6[TeW6O24]·22H2O) (TEW); Keggin (H4[SiW12O40]·6H2O) (STA); and 1 : 2 CeIII-substituted Keggin (K11[CeIII[PW11O39]2]·20H2O) (Ce-K). This results in the formation of complexes with clearly defined stoichiometries in solution. Crystal structures validate the complexes as building blocks for the formation of larger assemblies. ispartof: CHEMICAL COMMUNICATIONS vol:56 issue:78 pages:11601-11604 ispartof: location:England status: published
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- 2020
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11. A zirconium metal-organic framework with SOC topological net for catalytic peptide bond hydrolysis
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Sujing Wang, Hong Giang T. Ly, Mohammad Wahiduzzaman, Charlotte Simms, Iurii Dovgaliuk, Antoine Tissot, Guillaume Maurin, Tatjana N. Parac-Vogt, and Christian Serre
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Science & Technology ,ADSORPTION ,Multidisciplinary ,Hydrolysis ,General Physics and Astronomy ,General Chemistry ,Catalysis ,REACTIVITY ,General Biochemistry, Genetics and Molecular Biology ,Multidisciplinary Sciences ,REMOVAL ,Science & Technology - Other Topics ,Zirconium ,Peptides ,Metal-Organic Frameworks ,2D ,MOF - Abstract
The discovery of nanozymes for selective fragmentation of proteins would boost the emerging areas of modern proteomics, however, the development of efficient and reusable artificial catalysts for peptide bond hydrolysis is challenging. Here we report the catalytic properties of a zirconium metal-organic framework, MIP-201, in promoting peptide bond hydrolysis in a simple dipeptide, as well as in horse-heart myoglobin (Mb) protein that consists of 153 amino acids. We demonstrate that MIP-201 features excellent catalytic activity and selectivity, good tolerance toward reaction conditions covering a wide range of pH values, and importantly, exceptional recycling ability associated with easy regeneration process. Taking into account the catalytic performance of MIP-201 and its other advantages such as 6-connected Zr6 cluster active sites, the green, scalable and cost-effective synthesis, and good chemical and architectural stability, our findings suggest that MIP-201 may be a promising and practical alternative to commercially available catalysts for peptide bond hydrolysis. ispartof: NATURE COMMUNICATIONS vol:13 issue:1 ispartof: location:England status: published
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- 2022
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12. Hierarchical Self-Assembly of a Supramolecular Protein-Metal Cage Encapsulating a Polyoxometalate Guest
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Laurens Vandebroek, Hiroki Noguchi, Alexander Anyushin, Luc Van Meervelt, Arnout R. D. Voet, and Tatjana N. Parac-Vogt
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Technology ,COORDINATION ,Science & Technology ,Crystallography ,COMPUTATIONAL DESIGN ,Chemistry, Multidisciplinary ,Materials Science ,Materials Science, Multidisciplinary ,General Chemistry ,Condensed Matter Physics ,Chemistry ,Physical Sciences ,General Materials Science ,NITRATE - Abstract
ispartof: CRYSTAL GROWTH & DESIGN vol:22 issue:3 status: published
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- 2022
13. Expanding the Scope of Polyoxometalates as Artificial Proteases towards Hydrolysis of Insoluble Proteins
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Tatjana N. Parac-Vogt, David E. Salazar Marcano, and Nada D. Savić
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Anions ,Proteases ,Chemistry, Multidisciplinary ,SURFACTANT SOLUTIONS ,Catalysis ,surfactants ,SERUM-ALBUMIN ,Hydrolysis ,chemistry.chemical_compound ,Surface-Active Agents ,Pulmonary surfactant ,Dynamic light scattering ,EGG-WHITE LYSOZYME ,Organic chemistry ,polyoxometalates ,Sodium dodecyl sulfate ,TRYPTOPHAN FLUORESCENCE ,chemistry.chemical_classification ,Science & Technology ,ZEIN ,catalysis ,Chemistry ,Organic Chemistry ,General Chemistry ,Tungsten Compounds ,KEGGIN-TYPE ,Polyelectrolytes ,PAPAIN-CATALYZED HYDROLYSIS ,ZR-IV ,Enzyme ,hydrolysis ,VEHICLES ,Physical Sciences ,Selectivity ,insoluble proteins ,WELLS-DAWSON ,Peptide Hydrolases - Abstract
Despite the enormous importance of insoluble proteins in biological processes, their structural investigation remains a challenging task. The development of artificial enzyme-like catalysts would greatly facilitate the elucidation of their structure since currently used enzymes in proteomics largely lose activity in the presence of surfactants, which are necessary to solubilize insoluble proteins. In this study, the hydrolysis of a fully insoluble protein by polyoxometalate complexes as artificial proteases in surfactant solutions is reported for the first time. The hydrolysis of zein as a model protein was investigated in the presence of Zr(IV) and Hf(IV) substituted Keggin-type polyoxometalates (POMs), (Et2 NH2 )10 [M(α-PW11 O39 )2 ] (M = Zr or Hf), and different concentrations of the anionic surfactant sodium dodecyl sulfate (SDS). Selective hydrolysis of the protein upon incubation with the catalyst was observed, and the results indicate that the hydrolytic selectivity and activity of the POM catalysts strongly depends on the concentration of surfactant. The molecular interactions between the POM catalyst and zein in the presence of SDS were explored using a combination of spectroscopic techniques which indicated competitive binding between POM and SDS towards the protein. Furthermore, the formation of micellar superstructures in ternary POM/surfactant/protein solutions has been confirmed by conductivity and Dynamic Light Scattering measurements. ispartof: CHEMISTRY-A EUROPEAN JOURNAL vol:28 issue:8 ispartof: location:Germany status: published
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- 2021
14. Expanding the reactivity of inorganic clusters towards proteins: the interplay between the redox and hydrolytic activity of Ce(IV)-substituted polyoxometalates as artificial proteases
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Francisco de Azambuja, Paul Proost, Tatjana N. Parac-Vogt, Jens Moons, Shorok A. M. Abdelhameed, and Hong Giang T. Ly
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chemistry.chemical_classification ,Circular dichroism ,Hydrolyzed protein ,Protease ,010405 organic chemistry ,Globular protein ,Stereochemistry ,medicine.medical_treatment ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Chemistry ,Hydrolysis ,Protein structure ,chemistry ,medicine ,Peptide bond ,Reactivity (chemistry) - Abstract
The ability of soluble metal-oxo clusters to specifically interact with protein surfaces makes them attractive as potential inorganic drugs and as artificial enzymes. In particular, metal-substituted polyoxometalates (MS-POMs) are remarkably selective in hydrolyzing a range of different proteins. However, the influence of MS-POMs' redox chemistry on their proteolytic activity remains virtually unexplored. Herein we report a highly site-selective hydrolysis of hemoglobin (Hb), a large tetrameric globular protein, by a Ce(iv)-substituted Keggin polyoxometalate (CeIVK), and evaluate the effect of CeIVK's redox chemistry on its reactivity and selectivity as an artificial protease. At pH 5.0, incubation of Hb with CeIVK resulted in strictly selective protein hydrolysis at six Asp-X bonds, two of which were located in the α-chain (α(Asp75-Leu76) and α(Asp94-Pro95)) and five at the β-chain (β(Asp51-Ala52), β(Asp68-Ser69), β(Asp78-Asp79), β(Asp98-Pro99) and β(Asp128-Phe129)). However, increasing the pH of the reaction mixture to 7.4 decreased the CeIVK hydrolytic reactivity towards Hb, resulting in the cleavage of only one peptide bond (β(Asp128-Phe129)). Combination of UV-Vis, circular dichroism and Trp fluorescence spectroscopy indicated similar interactions between Hb and CeIVK at both pH conditions; however, 31P NMR spectroscopy showed faster reduction of CeIVK into the hydrolytically inactive CeIIIK form in the presence of protein at pH 7.4. In agreement with these results, careful mapping of all hydrolyzed Asp-X bonds on the protein structure revealed that the lower reactivity toward the α-chain was consistent with the presence of more redox-active amino acids (Tyr and His) in this subunit in comparison with the β-chain. This points towards a link between the presence of the redox-active sites on the protein surface and efficiency and selectivity of redox-active MS-POMs as artificial proteases. More importantly, the study provides a way to tune the redox and hydrolytic reactivity of MS-POMs towards proteins through adjustment of reaction parameters like temperature and pH., The redox chemistry of CeIV-polyoxometalates towards proteins is linked to the redox-active residues on protein surface. It can be tuned by adjusting reaction parameters, directly impacting its efficiency and selectivity as an artificial protease.
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- 2021
15. Modeling of Nanomolecular and Reticular Architectures with 6-fold Grooved, Programmable Interlocking Disks
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Aleksandar Kondinski, Erik Nies, Wim M. De Borggraeve, Jens Moons, Yujie Zhang, Tatjana N. Parac-Vogt, and Jakob Bussé
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Demonstrations ,FULLERENES ,Computer science ,Chemistry, Multidisciplinary ,Materials Science ,Molecular Modeling ,Social Sciences ,Nanotechnology ,01 natural sciences ,Molecular Properties/Structure ,Education ,Inorganic Chemistry ,Chemistry curriculum ,Group Theory/Symmetry ,SBus ,Education, Scientific Disciplines ,Interlocking ,Science instruction ,Science & Technology ,010405 organic chemistry ,05 social sciences ,050301 education ,Hands-On Learning/Manipulatives ,General Chemistry ,Education & Educational Research ,0104 chemical sciences ,Chemistry ,Physical Sciences ,Reticular connective tissue ,VISUALIZATION ,C-60 ,0503 education - Abstract
Single-type, 6-fold symmetrically grooved, and commercially accessible interlocking disks (ILDs) have been used for modeling of sp2 hybridized carbon-based nanoarchitectures and complex polyhedral and reticular material models. In the case of the carbon-based nanoarchitectures, we showcase that the primary ILDs can be directly used for representing individual atoms and bonds. Further on, the spatial connectivity of the primary ILDs can be extended by assembly of symmetrical secondary building units (SBUs). The constructed (deci)meter scale models are robust, light, scalable, and suitable for classroom demonstrations. The ILD technique is also suitable for use in workshops for facile discovery-based learning of nanomolecular structure, showing promise for wider use in the chemistry curriculum.
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- 2019
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16. Water-Tolerant and Atom Economical Amide Bond Formation by Metal-Substituted Polyoxometalate Catalysts
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Tatjana N. Parac-Vogt and Francisco de Azambuja
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Green chemistry ,010405 organic chemistry ,Chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Metal ,visual_art ,Atom ,Polymer chemistry ,Polyoxometalate ,visual_art.visual_art_medium ,Peptide bond ,Lewis acids and bases - Abstract
A simple, safe and inexpensive amide bond formation directly from non-activated carboxylic acids and free amines is presented in this work. Readily available Zr(IV)- and Hf(IV)-substituted polyoxometalates (POM) are shown to be excellent catalysts for the amide bond formation reaction under mild conditions, low catalyst loading, and without the use of water scavengers, dry solvents, additives for facilitating the amine attack, or specialized experimental setups commonly employed to remove water. Detailed mechanistic investigations revealed the key role of polyoxometalate scaffolds which act as inorganic ligands to protect Zr(IV) and Hf(IV) Lewis acidic metals against hydrolysis, and preserve their catalytic activity in amide bond formation reactions. The new catalysts are compatible with a range of functional groups and heterocycles useful for medicinal, agrochemical and material chemists. The robustness of the Lewis acid-polyoxometalate complexes is further supported by the catalyst reuse without loss of activity. This prolific combination of Zr(IV)/Hf(IV) and polyoxometalates inaugurates a powerful class of catalysts for the amide bond formation, which overcomes key limitations of previously established Zr(IV)/Hf(IV) salts and boron based catalysts. ispartof: Acs Catalysis vol:9 issue:11 pages:10245-10252 status: published
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- 2019
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17. High‐Field MRI Contrast Agents and their Synergy with Optical Imaging: the Evolution from Single Molecule Probes towards Nano‐architectures
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Tatjana N. Parac-Vogt, Michael Harris, and Silvanose Biju
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LANTHANIDE NANOPARTICLES ,RELAXIVITY ,Chemistry, Multidisciplinary ,media_common.quotation_subject ,Nanoparticle ,Nanotechnology ,optical and multimodal imaging ,010402 general chemistry ,01 natural sciences ,Catalysis ,GADOLINIUM ,Paramagnetism ,MAGNETIC-RESONANCE ,medicine ,Contrast (vision) ,Molecule ,contrast agents ,Chelation ,PROTON RELAXATION-TIMES ,NAHOF4 NANOPARTICLES ,nanomaterials ,OXIDE NANOPARTICLES ,media_common ,Science & Technology ,Modality (human–computer interaction) ,medicine.diagnostic_test ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Relaxation (NMR) ,POTENTIAL BIMODAL AGENTS ,Magnetic resonance imaging ,General Chemistry ,0104 chemical sciences ,Physical Sciences ,UP-CONVERSION ,X-RAY ,high-field MRI - Abstract
Contrast agents for magnetic resonance imaging have historically been based on paramagnetic metal complexes, particularly Gd3+ chelates, which tend to lose their contrast enhancement ability with increasing magnetic field strength. Emerging high-field MRI applications require the development of novel contrast agents that exhibit high relaxation enhancement as a function of magnetic field strength. Paramagnetic ions such as Dy3+ , Tb3+ or Ho3+ incorporated into supramolecular or inorganic nano-architectures represent promising platforms for the development of high field MRI contrast agents. Furthermore, such platforms allow facile inclusion of multiple imaging modalities, therapeutic loading, and targeting vectors. This Minireview examines the application of contrast agents for high-field MRI, which range from single molecules to nanoparticles. Approaches to create multimodal agents by combining high-field MRI contrast properties with another imaging modality are also discussed. ispartof: CHEMISTRY-A EUROPEAN JOURNAL vol:25 issue:61 pages:13838-13847 ispartof: location:Germany status: published
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- 2019
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18. Visualization and characterization of metallo-aggregates using multi-photon microscopy
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Carmen Bartic, Michèle Moris, Tatjana N. Parac-Vogt, Rui V. Silva, Thierry Verbiest, Ana Zamora, and Olivier Deschaume
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Materials science ,General Chemical Engineering ,GENERAL MORPHOLOGY ,Microscopy ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Nanotechnology ,General Chemistry ,Multi photon microscopy ,Characterization (materials science) ,Visualization - Abstract
A simple and cost-effective method based on multi-photon microscopy is presented for the preliminary screening of the general morphology, size range and heterogeneity of Ir(III) nano-aggregate formulations. ispartof: RSC Advances vol:11 issue:2 pages:657-661 ispartof: location:England status: published
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- 2021
19. Hybrid catalyst with combined Lewis and Brønsted acidity based on ZrIV substituted polyoxometalate grafted on mesoporous MCM-41 silica for esterification of renewable levulinic acid
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Pavletta Shestakova, Ágnes Szegedi, Thi Kim Nga Luong, Ivalina Trendafilova, Judith Mihály, Hristina Lazarova, Tatjana N. Parac-Vogt, and Margarita Popova
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02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,MCM-41 ,Levulinic acid ,General Materials Science ,Lewis acids and bases ,Brønsted acid ,Chemistry ,Polyoxometalates ,General Chemistry ,Mesoporous silica ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Lewis acid ,0104 chemical sciences ,Tetraethyl orthosilicate ,Chemical engineering ,Mechanics of Materials ,0210 nano-technology ,Brønsted–Lowry acid–base theory ,Mesoporous material - Abstract
Materials which synergistically combine Lewis and Bronsted acid properties hold potential for applications as efficient heterogeneous catalysts for preparation of biofuels and biolubricants. Herein we report new heterogeneous catalysts based on grafting the intact Lewis metal (ZrIV) substituted Keggin polyoxometalate (POM) on mesoporous silica support. A new approach for immobilization of the POM in MCM-41 silica was developed by co-condensation of Si source (tetraethyl orthosilicate, TEOS) with POM salt in the presence of a template molecule as an alternative to the commonly used acidic POM form and impregnation procedure for catalyst preparation. The proposed synthesis method in combination with extraction of the template proceeded with preservation of the intact POM structure and resulted in hybrid catalysts with in situ generated Bronsted acid sites in addition to the Lewis acidity provided by the metal centers. Textural properties of the catalysts were characterized by X-ray diffraction, N2 physisorption and transmission electron microscopy (TEM). Insight into POM stability and structural transformations during synthesis, template removal and impregnation was provided by solid state 31P and 29Si NMR spectroscopy. Catalytic activity was studied in esterification reactions of levulinic acid with ethanol or octanol to value-added esters. The directly synthesized POM-functionalized hybrid catalysts exceeded the post synthesis impregnated ones, demonstrating significantly higher catalytic activity, recyclability and resistance against leaching. The proposed approach for immobilization of Lewis metal POMs in MCM-41 silica framework with in situ generation of the active Bronsted acid sites opens prospects for the development of efficient hybrid catalysts for esterification reaction, which overcomes the main limitations of common POM based catalysts such as low stability of the acid sites during the synthesis and the catalytic reaction, low surface area, agglomeration of the catalytically active phase and low stability of the Lewis metal center in presence of water.
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- 2021
20. Hydrolysis of Peptide Bonds in Protein Micelles Promoted by a Zirconium(IV)-Substituted Polyoxometalate as an Artificial Protease
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Tatjana N. Parac-Vogt, Nada D. Savić, and Thomas Quanten
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Circular dichroism ,Chemistry, Multidisciplinary ,SELECTIVE HYDROLYSIS ,zirconium ,HUMAN SERUM-ALBUMIN ,Polyethylene glycol ,010402 general chemistry ,01 natural sciences ,Micelle ,Catalysis ,surfactants ,CIRCULAR-DICHROISM ,Surface-Active Agents ,chemistry.chemical_compound ,Hydrolysis ,Pulmonary surfactant ,Polymer chemistry ,EGG-WHITE LYSOZYME ,polyoxometalates ,Solubility ,Sodium dodecyl sulfate ,Micelles ,REGIOSELECTIVE HYDROLYSIS ,Science & Technology ,010405 organic chemistry ,BOVINE BETA-CASEIN ,Organic Chemistry ,General Chemistry ,Tungsten Compounds ,beta-casein ,KEGGIN-TYPE ,0104 chemical sciences ,SECONDARY STRUCTURE ANALYSES ,Chemistry ,ZR-IV ,chemistry ,hydrolysis ,Polyoxometalate ,Physical Sciences ,Zirconium ,Peptides ,CHEMICAL CLEAVAGE ,Peptide Hydrolases - Abstract
The development of artificial proteases is challenging, but important for many applications in modern proteomics and biotechnology. The hydrolysis of hydrophobic or unstructured proteins is particularly difficult due to their poor solubility, which often requires the presence of surfactants. Herein, it is shown that a zirconium(IV)-substituted Keggin polyoxometalate (POM), (Et2 NH2 )10 [Zr(α-PW11 O39 )2 ] (1), is able to selectively hydrolyze β-casein, which is an intrinsically unstructured protein at pH 7.4 and 60 °C. Four surfactants (sodium dodecyl sulfate (SDS), N-dodecyl-N,N-dimethyl-3-ammonio-1-propanesulfonate (ZW3-12), 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), and polyethylene glycol tert-octylphenyl ether (TX-100)), which differ in the nature of their polar groups, were investigated for their role in influencing the selectivity and efficiency of protein hydrolysis. Under experimental conditions, β-casein forms micellar structures in which the hydrophilic part of the protein is water accessible and able to interact with 1. Identical fragmentation patterns of β-casein in the presence of 1 were observed through SDS poly(acrylamide) gel electrophoresis both in the presence and absence of surfactants, but the rate of hydrolysis varied, depending on the nature of surfactant. Whereas TX-100 surfactant, which has a neutral polar head, caused only a slight decrease in the hydrolysis rate, stronger inhibition was observed in the presence surfactants with charges in their polar heads (CHAPS, ZW3-12, SDS). These results were consistent with those of tryptophan fluorescencequenching studies, which showed that the binding between β-casein and 1 decreased with increasing repulsion between the POM and the polar heads of the surfactants. In all cases, the micellar structure of β-casein was not significantly affected by the presence of POM or surfactants, as indicated by circular dichroism spectroscopy. ispartof: CHEMISTRY-A EUROPEAN JOURNAL vol:26 issue:49 pages:11170-11179 ispartof: location:Germany status: published
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- 2020
21. Selective Hydrolysis of Terminal Glycosidic Bond in α-1-Acid Glycoprotein Promoted by Keggin and Wells-Dawson Type Heteropolyacids
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Jens Moons, Wim Van den Ende, Jo Aelbers, Tatjana N. Parac-Vogt, Laura S. Van Rompuy, and Tom Struyf
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Circular dichroism ,Glycan ,Stereochemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,Hydrolysis ,chemistry.chemical_compound ,Reactivity (chemistry) ,Glycosides ,Sodium dodecyl sulfate ,Polyacrylamide gel electrophoresis ,Glycoproteins ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Organic Chemistry ,Glycosidic bond ,General Chemistry ,Orosomucoid ,N-Acetylneuraminic Acid ,0104 chemical sciences ,Sialic acid ,chemistry ,biology.protein - Abstract
The reactivity of a range of Keggin and Wells-Dawson type heteropolyacids (HPAs): H3 PW12 O40 H4 SiW12 O40 , H3 PMo12 O40 , K6 P2 W18 O62 , and NaH2 W12 O4 , towards the heavily glycosylated α-1-acid glycoprotein (AGP) is reported. Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and high-performance anion exchange chromatography with pulsed amperometric detection (HPAEC-PAD) show that after incubation of the protein with HPAs at 80 °C and pH 2.8 complete hydrolysis of terminal glycosidic bond has been achieved, resulting in the removal of sialic acids with no observed destruction of the protein core or the residual glycan chains. The 1 H NMR spectroscopy confirmed that the released sialic acids preserve intact structure upon their excision from the protein, which makes the reported method suitable for the analysis of sialic acid modifications which play an important role in numerous biological processes. The presence of other sugars was not detected by 1 H NMR and HPAEC-PAD, suggesting that HPAs hydrolyze only the terminal glycosidic bond in the glycoprotein, resulting in the selective release of sialic acid from AGP. The kinetic results have shown that under equal temperature and pH conditions, the hydrolysis of the terminal glucosidic bond occurred faster in the presence of HPAs compared to conventional mineral acids. The observed rate constants were in the range 6,7×10-2 -11,9×10-2 min-1 and the complete and selective excision of sialic acids could be achieved within 60 min of incubation. The Trp fluorescence and CD spectroscopy show that non-covalent interaction between HPA and protein takes place in solution which could lead to stabilization of the sialosyl cation that is formed during the glycosidic bond hydrolysis by anionic HPA cluster.
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- 2020
22. Discrete Hf 18 Metal‐oxo Cluster as a Heterogeneous Nanozyme for Site‐Specific Proteolysis
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Francisco de Azambuja, Karoly Kozma, Katarina Smiljanic, Tatjana N. Parac-Vogt, Tanja Cirkovic Velickovic, Jens Moons, Mehran Amiri, Jelena Mihailovic, and May Nyman
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protein hydrolysis ,EFFICIENCY ,Chemistry, Multidisciplinary ,SELECTIVE HYDROLYSIS ,artificial proteases ,Random hexamer ,Heterogeneous catalysis ,010402 general chemistry ,01 natural sciences ,Catalysis ,amino-acid-selective cleavage ,MYOGLOBIN ,POLYOXOTUNGSTATES ,Metal ,Hydrolysis ,chemistry.chemical_compound ,BOND HYDROLYSIS ,chemistry.chemical_classification ,CATALYST ,Science & Technology ,010405 organic chemistry ,CLEAVAGE ,PEPTIDES ,General Chemistry ,General Medicine ,Combinatorial chemistry ,Amino acid ,0104 chemical sciences ,Solvent ,Chemistry ,heterogeneous catalysis ,chemistry ,Myoglobin ,visual_art ,Physical Sciences ,ACID ,visual_art.visual_art_medium ,RESIDUES ,metal-oxo clusters - Abstract
The selective hydrolysis of proteins by non‐enzymatic catalysis is difficult to achieve, yet it is crucial for applications in biotechnology and proteomics. Herein, we report that discrete hafnium metal‐oxo cluster [Hf18O10(OH)26(SO4)13⋅(H2O)33] (Hf18), which is centred by the same hexamer motif found in many MOFs, acts as a heterogeneous catalyst for the efficient hydrolysis of horse heart myoglobin (HHM) in low buffer concentrations. Among 154 amino acids present in the sequence of HHM, strictly selective cleavage at only 6 solvent accessible aspartate residues was observed. Mechanistic experiments suggest that the hydrolytic activity is likely derived from the actuation of HfIV Lewis acidic sites and the Brønsted acidic surface of Hf18. X‐ray scattering and ESI‐MS revealed that Hf18 is completely insoluble in these conditions, confirming the HHM hydrolysis is caused by a heterogeneous reaction of the solid Hf18 cluster, and not from smaller, soluble Hf species that could leach into solution. This is the peer-reviewed version of the following article: Moons, J.; de Azambuja, F.; Mihailović, J.; Kozma, K.; Smiljanić, K.; Amiri, M.; Ćirković-Veličković, T.; Nyman, M.; Parac-Vogt, T. Discrete Hf18 Metal‐oxo Cluster as a Heterogeneous Nanozyme for Site‐Specific Proteolysis. Angewandte Chemie (International Edition) 2020, 59 (17), 1–9. [https://doi.org/10.1002/anie.202001036]. Supplementary material: [https://cherry.chem.bg.ac.rs/handle/123456789/4851]
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- 2020
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23. Superactivity of MOF-808 toward Peptide Bond Hydrolysis
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Aleksandar Kondinski, Bart Bueken, Hong Giang T. Ly, Tatjana N. Parac-Vogt, Dirk De Vos, and Guangxia Fu
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Glycylglycine ,chemistry.chemical_classification ,animal structures ,integumentary system ,010405 organic chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Amino acid ,chemistry.chemical_compound ,Hydrolysis ,Colloid and Surface Chemistry ,chemistry ,Amide ,embryonic structures ,Polymer chemistry ,Side chain ,Peptide bond ,Lysozyme - Abstract
MOF-808, a Zr(IV)-based metal-organic framework, has been proven to be a very effective heterogeneous catalyst for the hydrolysis of the peptide bond in a wide range of peptides and in hen egg white lysozyme protein. The kinetic experiments with a series of Gly-X dipeptides with varying nature of amino acid side chain have shown that MOF-808 exhibits selectivity depending on the size and chemical nature of the X side chain. Dipeptides with smaller or hydrophilic residues were hydrolyzed faster than those with bulky and hydrophobic residues that lack electron rich functionalities which could engage in favorable intermolecular interactions with the btc linkers. Detailed kinetic studies performed by 1H NMR spectroscopy revealed that the rate of glycylglycine (Gly-Gly) hydrolysis at pD 7.4 and 60 °C was 2.69 × 10-4 s-1 ( t1/2 = 0.72 h), which is more than 4 orders of magnitude faster compared to the uncatalyzed reaction. Importantly, MOF-808 can be recycled several times without significantly compromising the catalytic activity. A detailed quantum-chemical study combined with experimental data allowed to unravel the role of the {Zr6O8} core of MOF-808 in accelerating Gly-Gly hydrolysis. A mechanism for the hydrolysis of Gly-Gly by MOF-808 is proposed in which Gly-Gly binds to two Zr(IV) centers of the {Zr6O8} core via the oxygen atom of the amide group and the N-terminus. The activity of MOF-808 was also demonstrated toward the hydrolysis of hen egg white lysozyme, a protein consisting of 129 amino acids. Selective fragmentation of the protein was observed with 55% yield after 25 h under physiological pH.
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- 2018
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24. Drawing on biology to inspire molecular design: a redox-responsive MRI probe based on Gd(<scp>iii</scp>)-nicotinamide
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Sophie Laurent, Tatjana N. Parac-Vogt, Jacek L. Kolanowski, Michael Harris, Edward O'Neill, Céline Henoumont, and Elizabeth J. New
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Niacinamide ,COBALT COMPLEXES ,Luminescence ,RELAXIVITY ,STRATEGIES ,Chemistry, Multidisciplinary ,EUROPIUM ,Contrast Media ,Gadolinium ,HYPOXIA ,Ligands ,010402 general chemistry ,01 natural sciences ,Redox ,Catalysis ,chemistry.chemical_compound ,Coordination Complexes ,MAGNETIC-RESONANCE ,Materials Chemistry ,Molecule ,OXIDATIVE STRESS ,Science & Technology ,Nicotinamide ,010405 organic chemistry ,Metals and Alloys ,Water ,General Chemistry ,Redox responsive ,Magnetic Resonance Imaging ,3. Good health ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Chemistry ,DOTA ,chemistry ,Physical Sciences ,LUMINESCENCE ,Ceramics and Composites ,Biophysics ,Cyclic voltammetry ,Oxidation-Reduction ,IMAGING CONTRAST AGENTS - Abstract
A novel, reversible redox-active MRI probe, GdNR1, has been developed for the study of redox changes associated with diseased states. This system exhibits switching in relaxivity upon reduction and oxidation of the appended nicotinimidium. Relaxivity studies and cyclic voltammetry confirmed the impressive reversibility of this system, at a biologically-relevant reduction potential. A 2.5-fold increase in relaxivity was observed upon reduction of the complex, which corresponds to a change in the number of inner-sphere water molecules, as confirmed by luminescence lifetimes of the Eu(iii) analogue and NMRD studies. This is the first example of a redox-responsive MRI probe utilising the biologically-inspired nicotinimidium redox switch. In the future this strategy could enable the non-invasive identification of hypoxic tissue and related cardiovascular disease. ispartof: CHEMICAL COMMUNICATIONS vol:54 issue:92 pages:12986-12989 ispartof: location:England status: published
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- 2018
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25. The forgotten chemistry of group(IV) metals: A survey on the synthesis, structure, and properties of discrete Zr(IV), Hf(IV), and Ti(IV) oxo clusters
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Yujie Zhang, Francisco de Azambuja, and Tatjana N. Parac-Vogt
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Solid-state chemistry ,Zirconium ,010405 organic chemistry ,Chemistry ,chemistry.chemical_element ,Context (language use) ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Catalysis ,Inorganic Chemistry ,Metal ,Group (periodic table) ,Computational chemistry ,General chemistry ,visual_art ,Materials Chemistry ,visual_art.visual_art_medium ,Reactivity (chemistry) ,Physical and Theoretical Chemistry - Abstract
Group (IV) metal oxo clusters are a diverse class of compounds with rapidly growing applications in catalysis, materials chemistry, electronics and optics. They possess unique structural stability, reactivity and electronic properties; however, their potential remains underexplored due to the gaps in fundamental understanding about their structure, intrinsic features, and nuances in their synthesis that overall would allow for great tunability of their properties. In this context, here we review the chemistry of discrete zirconium, hafnium, and titanium metal oxo clusters reported in the literature in order to provide a critical overview of the structural features, properties and reactivity disclosed to date. While a comprehensive summary of Zr and Hf clusters is presented, only the most recent Ti oxo clusters are discussed in addition to some key compounds that have been revised elsewhere. Envisioning the growing relevance group (IV) metal oxo clusters for the synthesis of nanostructure materials and in catalysis, we also summarize key principles of their surface chemistry, and the photoactivity of Ti oxo clusters, given the paramount importance of these properties for the development of future applications.
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- 2021
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26. Highly Selective and Tunable Protein Hydrolysis by a Polyoxometalate Complex in Surfactant Solutions: A Step toward the Development of Artificial Metalloproteases for Membrane Proteins
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Tatjana N. Parac-Vogt, Erik Martens, Annelies Sap, L. Vandebroek, Paul Proost, and Vincent Goovaerts
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Hydrolyzed protein ,Edman degradation ,010405 organic chemistry ,Chemistry ,General Chemical Engineering ,General Chemistry ,010402 general chemistry ,Human serum albumin ,01 natural sciences ,Article ,0104 chemical sciences ,lcsh:Chemistry ,Hydrolysis ,lcsh:QD1-999 ,Pulmonary surfactant ,Polymer chemistry ,Polyoxometalate ,medicine ,Organic chemistry ,Peptide bond ,Selectivity ,medicine.drug - Abstract
This study represents the first example of protein hydrolysis at pH = 7.4 and 60 °C by a metal-substituted polyoxometalate (POM) in the presence of a zwitterionic surfactant. Edman degradation results show that in the presence of 0.5% w/v 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS) detergent, a Zr(IV)-substituted Wells-Dawson-type POM, K15H[Zr(α2-P2W17O61)2]·25H2O (Zr1-WD2), selectively hydrolyzes human serum albumin exclusively at peptide bonds involving Asp or Glu residues, which contain carboxyl groups in their side chains. The selectivity and extent of protein cleavage are tuned by the CHAPS surfactant by an unfolding mechanism that provides POM access to the hydrolyzed peptide bonds. ispartof: ACS Omega vol:2 issue:5 pages:2026-2033 ispartof: location:United States status: published
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- 2017
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27. Polyoxometalates as artificial nucleases: hydrolytic cleavage of DNA promoted by a highly negatively charged ZrIV-substituted Keggin polyanion
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Johan Robben, Pavletta Shestakova, Thi Kim Nga Luong, Tatjana N. Parac-Vogt, and Iris Govaerts
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Circular dichroism ,010405 organic chemistry ,Inorganic chemistry ,Metals and Alloys ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,Cleavage (embryo) ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Hydrolysis ,chemistry.chemical_compound ,chemistry ,Phosphodiester bond ,Polymer chemistry ,Polyoxometalate ,Materials Chemistry ,Ceramics and Composites ,pUC19 ,DNA - Abstract
A highly negatively charged binuclear ZrIV-substituted Keggin polyoxometalate [{α-PW11O39Zr(μ-OH)(H2O)}2]8- (ZrK 2 : 2) has been shown to promote the hydrolytic cleavage of phosphoester bonds in the supercoiled plasmid pUC19 DNA under physiological pH and temperature, giving relaxed and linear forms of pUC19 as hydrolysis products. The interaction between ZrK 2 : 2 and DNA was experimentally proven by circular dichroism (CD) spectroscopy and 31P diffusion ordered NMR spectroscopy. crosscheck: This document is CrossCheck deposited related_data: Supplementary Information identifier: T. N. Parac-Vogt (ORCID) copyright_licence: The Royal Society of Chemistry has an exclusive publication licence for this journal history: Received 24 October 2016; Accepted 9 December 2016; Accepted Manuscript published 9 December 2016; Advance Article published 16 December 2016; Version of Record published 3 January 2017 ispartof: Chemical Communications vol:53 issue:3 pages:617-620 ispartof: location:England status: published
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- 2017
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28. Hybrid polyoxometalates as post-functionalization platforms: from fundamentals to emerging applications
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Alexander V Anyushin, Tatjana N. Parac-Vogt, and Aleksandar Kondinski
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Materials science ,Homogeneous ,Polyoxometalate ,Molecule ,Surface modification ,Nanotechnology ,General Chemistry ,Redox responsive ,Organic molecules ,Nanoclusters - Abstract
Polyoxometalates (POMs) represent an important group of metal-oxo nanoclusters, typically comprised of early transition metals in high oxidation states (mainly V, Mo and W). Many plenary POMs exhibit good pH, solvent, thermal and redox stability, which makes them attractive components for the design of covalently integrated hybrid organic-inorganic molecules, herein referred to as hybrid-POMs. Until now, thousands of organic hybrid-POMs have been reported; however, only a small fraction can be further functionalized using other organic molecules or metal cations. This emerging class of 'post-functionalizable' hybrid-POMs constitute a valuable modular platform that permits coupling of POM properties with different organic and metal cation functionalities, thereby expanding the key physicochemical properties that are relevant for application in (photo)catalysis, bioinorganic chemistry and materials science. The post-functionalizable hybrid-POM platforms offer an opportunity to covalently link multi-electron redox responsive POM cores with virtually any (bio)organic molecule or metal cation, generating a wide range of materials with tailored properties. Over the past few years, these materials have been showcased in the preparation of framework materials, functional surfaces, surfactants, homogeneous and heterogeneous catalysts and light harvesting materials, among others. This review article provides an overview on the state of the art in POM post-functionalization and highlights the key design and structural features that permit the discovery of new hybrid-POM platforms. In doing so, we aim to make the subject more comprehensible, both for chemists and for scientists with different materials science backgrounds interested in the applications of hybrid (POM) materials. The review article goes beyond the realms of polyoxometalate chemistry and encompasses emerging research domains such as reticular materials, surfactants, surface functionalization, light harvesting materials, non-linear optics, charge storing materials, and homogeneous acid-base catalysis among others. ispartof: CHEMICAL SOCIETY REVIEWS vol:49 issue:2 pages:382-432 ispartof: location:England status: published
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- 2019
29. Frontispiece: High‐Field MRI Contrast Agents and their Synergy with Optical Imaging: the Evolution from Single Molecule Probes towards Nano‐architectures
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Michael Harris, Silvanose Biju, and Tatjana N. Parac‐Vogt
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Organic Chemistry ,General Chemistry ,Catalysis - Published
- 2019
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30. Chemical Mimics of Aspartate-Directed Proteases: Predictive and Strictly Specific Hydrolysis of a Globular Protein at Asp-X Sequence Promoted by Polyoxometalate Complexes Rationalized by a Combined Experimental and Theoretical Approach
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Jeremy N. Harvey, Tzvetan Mihaylov, Paul Proost, Hong Giang T. Ly, Tatjana N. Parac-Vogt, and Kristine Pierloot
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PEPTIDE-BOND HYDROLYSIS ,Magnetic Resonance Spectroscopy ,Chemistry, Multidisciplinary ,SELECTIVE HYDROLYSIS ,Molecular Conformation ,01 natural sciences ,CIRCULAR-DICHROISM ,DENSITY-FUNCTIONAL THEORY ,Hemoglobins ,chemistry.chemical_compound ,Biomimetic Materials ,Coordination Complexes ,Amide ,metaloproteases ,Side chain ,Peptide bond ,chemistry.chemical_classification ,Hydrolysis ,Succinic anhydride ,Tungsten Compounds ,Molecular Docking Simulation ,Chemistry ,hydrolysis ,AUXILIARY BASIS-SETS ,Physical Sciences ,Thermodynamics ,SUBSTITUTED KEGGIN POLYOXOMETALATE ,REGIOSELECTIVE CLEAVAGE ,Globular protein ,Stereochemistry ,010402 general chemistry ,Cleavage (embryo) ,Catalysis ,Reactivity (chemistry) ,polyoxometalates ,Amino Acid Sequence ,Aspartic Acid ,Binding Sites ,Science & Technology ,catalysis ,ACID CLEAVAGE ,010405 organic chemistry ,Organic Chemistry ,General Chemistry ,hemoglobin ,0104 chemical sciences ,ZR-IV ,chemistry ,Zirconium ,WELLS-DAWSON ,Peptide Hydrolases - Abstract
Creating efficient and residue-directed artificial proteases is a challenging task due to the extreme inertness of the peptide bond, combined with the difficulty of achieving specific interactions between the catalysts and the protein side chains. Herein we report strictly site-selective hydrolysis of a multi-subunit globular protein, hemoglobin (Hb) from bovine blood, by a range of ZrIV -substituted polyoxometalates (Zr-POMs) in mildly acidic and physiological pH solutions. Among 570 peptide bonds in Hb, selective cleavage was observed at only eleven sites, each occurring at Asp-X peptide bonds located in the positive patches on the protein surface. The molecular origins of the observed Asp-X selectivity were rationalized by means of molecular docking, DFT-based binding, and mechanistic studies on model peptides. The proposed mechanism of hydrolysis involves coordination of the amide oxygen to ZrIV followed by a direct nucleophilic attack of the side chain carboxylate group on the C-terminal amide carbon atom with formation of a cyclic anhydride, which is further hydrolyzed to give the reaction products. The activation energy for the cleavage of the structurally related Glu-X sequence compared to Asp-X was calculated to be higher by 1.4 kcal mol-1 , which corresponds to a difference of about one order of magnitude in the rates of hydrolysis. The higher activation energy is attributed to the higher strain present in the six-membered ring of glutaric anhydride (Glu-X), as compared to the five-membered ring of the succinic anhydride (Asp-X) intermediate. Similarly, the cleavage at X-Asp and X-Glu bonds are predicted to be kinetically less likely as the corresponding activation energies were 6 kcal mol-1 higher, explaining the experimentally observed selectivity. The synergy between the negatively charged polyoxometalate cluster, which binds at positive patches on protein surfaces, and selective activation of Asp-X peptide bonds located in these regions by ZrIV ions, results in a novel class of artificial proteases with aspartate-directed reactivity, which is very rare among naturally occurring proteases. ispartof: CHEMISTRY-A EUROPEAN JOURNAL vol:25 issue:63 pages:14370-14381 ispartof: location:Germany status: published
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- 2019
31. Editorial: Advances in the Development of Artificial Metalloenzymes
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Tatjana N. Parac-Vogt, Andrea Erxleben, Gerhard Schenk, and Rajeev Prabhakar
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mechanisms ,Science & Technology ,metalloenzymes ,reactions ,catalysis ,Chemistry ,Chemistry, Multidisciplinary ,MEDLINE ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,lcsh:Chemistry ,lcsh:QD1-999 ,Physical Sciences ,active sites ,Engineering ethics ,0210 nano-technology - Abstract
ispartof: FRONTIERS IN CHEMISTRY vol:7 ispartof: location:Switzerland status: published
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- 2019
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32. Programmable Interlocking Disks: Bottom-Up Modular Assembly of Chemically Relevant Polyhedral and Reticular Structural Models
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Aleksandar Kondinski and Tatjana N. Parac-Vogt
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Science instruction ,010405 organic chemistry ,business.industry ,05 social sciences ,050301 education ,General Chemistry ,Top-down and bottom-up design ,Modular design ,Network topology ,01 natural sciences ,0104 chemical sciences ,Education ,Computational science ,Reticular connective tissue ,Scalability ,SBus ,business ,0503 education ,Interlocking - Abstract
© 2019 American Chemical Society and Division of Chemical Education, Inc. Single-type, 8-fold-grooved, commercially accessible interlocking disks (ILDs) have been used for modeling of complex polyhedral and reticular topologies with relevance to inorganic and hybrid materials. The assembly of complex topologies relies on the preparation of secondary building units (SBUs), which exhibit different connectivity than that of the primary ILDs. All ILD-based models are light, scalable, programmable, and suitable for discovery-based learning and classroom demonstrations of stereochemistry and complex chemical concepts. ispartof: Journal Of Chemical Education vol:96 issue:3 pages:601-605 status: published
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- 2019
33. Hydrolysis of Chemically Distinct Sites of Human Serum Albumin by Polyoxometalate: A Hybrid QM/MM (ONIOM) Study
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Rajeev Prabhakar, Qiaoyu Hu, Vindi M. Jayasinghe-Arachchige, Gaurav Sharma, Tatjana N. Parac-Vogt, David Quiñonero, Marcus Lundberg, and Thomas J. Paul
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ONIOM ,Reaction mechanism ,Stereochemistry ,QM/MM (ONIOM) method ,Serum Albumin, Human ,010402 general chemistry ,Cleavage (embryo) ,Physical Chemistry ,01 natural sciences ,QM/MM ,Hydrolysis ,Teoretisk kemi ,0103 physical sciences ,medicine ,Peptide bond ,Humans ,polyoxometalates ,peptide hydrolysis ,Theoretical Chemistry ,Fysikalisk kemi ,010304 chemical physics ,Chemistry ,General Chemistry ,Tungsten Compounds ,Human serum albumin ,0104 chemical sciences ,Computational Mathematics ,human serum albumin ,Polyoxometalate ,Quantum Theory ,reaction mechanism ,medicine.drug - Abstract
In this study, mechanisms of hydrolysis of all four chemically diverse cleavage sites of human serum albumin (HSA) by [Zr(OH)(PW11 O39 )]4- (ZrK) have been investigated using the hybrid two-layer QM/MM (ONIOM) method. These reactions have been proposed to occur through the following two mechanisms: internal attack (IA) and water assisted (WA). In both mechanisms, the cleavage of the peptide bond in the Cys392-Glu393 site of HSA is predicted to occur in the rate-limiting step of the mechanism. With the barrier of 27.5 kcal/mol for the hydrolysis of this site, the IA mechanism is found to be energetically more favorable than the WA mechanism (barrier = 31.6 kcal/mol). The energetics for the IA mechanism are in line with the experimentally measured values for the cleavage of a wide range of dipeptides. These calculations also suggest an energetic preference (Cys392-Glu393, Ala257-Asp258, Lys313-Asp314, and Arg114-Leu115) for the hydrolysis of all four sites of HSA. © 2018 Wiley Periodicals, Inc. ispartof: JOURNAL OF COMPUTATIONAL CHEMISTRY vol:40 issue:1 pages:51-61 ispartof: location:United States status: published
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- 2019
34. Ultrasmall Superparamagnetic Iron Oxide Nanoparticles with Europium(III) DO3A as a Bimodal Imaging Probe
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Sophie Carron, Sophie Laurent, Maarten Bloemen, Luce Vander Elst, Tatjana N. Parac-Vogt, and Thierry Verbiest
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Lanthanide ,Luminescence ,Analytical chemistry ,Contrast Media ,Nanoparticle ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,Ferric Compounds ,01 natural sciences ,Catalysis ,Ion ,chemistry.chemical_compound ,Europium ,Particle Size ,Fourier transform infrared spectroscopy ,Magnetite Nanoparticles ,Ultrasmall superparamagnetic iron oxide ,Chemistry ,Organic Chemistry ,Dextrans ,General Chemistry ,021001 nanoscience & nanotechnology ,Magnetic Resonance Imaging ,0104 chemical sciences ,Luminophore ,Nanoparticles ,0210 nano-technology ,Nuclear chemistry - Abstract
A new prototype consisting of ultrasmall superparamagnetic iron oxide (USPIO) nanoparticles decorated with europium(III) ions encapsulated in a DO3A organic scaffold was designed as a platform for further development of bimodal contrast agents for MRI and optical imaging. The USPIO nanoparticles act as negative MRI contrast agents, whereas the europium(III) ion is a luminophore that is suitable for use in optical imaging detection. The functionalized USPIO nanoparticles were characterized by TEM, DLS, XRD, FTIR, and TXRF analysis, and a full investigation of the relaxometric and optical properties was conducted. The typical luminescence emission of europium(III) was observed and the main red emission wavelength was found at 614 nm. The relaxometric study of these ultrasmall nanoparticles showed r2 values of 114.8 mM(-1) Fes(-1) at 60 MHz, which is nearly double the r2 relaxivity of Sinerem(®).
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- 2016
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35. Interaction Study and Reactivity of ZrIV-Substituted Wells-Dawson Polyoxometalate towards Hydrolysis of Peptide Bonds in Surfactant Solutions
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Pavletta Shestakova, Tatjana N. Parac-Vogt, Christine E. A. Kirschhock, Dries Van Den Bulck, and Thomas Quanten
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Ammonium bromide ,Magnetic Resonance Spectroscopy ,Octoxynol ,Inorganic chemistry ,Nuclear Overhauser effect ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Catalysis ,Surface-Active Agents ,chemistry.chemical_compound ,Pulmonary surfactant ,Organometallic Compounds ,Peptide bond ,Sodium dodecyl sulfate ,Dipeptide ,010405 organic chemistry ,Hydrolysis ,Organic Chemistry ,Hydrogen Bonding ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Tungsten Compounds ,0104 chemical sciences ,Solutions ,chemistry ,Zirconium ,Peptides ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
The interaction between the 1:2 Zr(IV) :Wells-Dawson complex, K15 H[Zr(α2 -P2 W17 O61 )2] (1), and a range of surfactants was studied in detail with the aim of developing metal-substituted POMs as potential artificial proteases for membrane proteins. The surfactants include the positively charged cetyl(trimethyl)ammonium bromide (CTAB), the negatively charged sodium dodecyl sulfate (SDS), the neutral Triton X-100 (TX-100), and zwitterionic 3-[dodecyl(dimethyl)ammonio]-1-propanesulfonate (Zw3-13) and 3-[dimethyl(3-{[(3α,5β,7α,12α)-3,7,12-trihydroxy-24-oxocholan-24-yl]amino}propyl)ammonio]-1-propanesulfonate (CHAPS). A combination of multinuclear (1)H, (13)C, and (31) P NMR spectroscopy, (1)H diffusion-ordered NMR spectroscopy ((1)H DOSY), and nuclear Overhauser effect spectroscopy (NOESY) was used to examine the interaction between 1 and each surfactant on the molecular level. Cationic surfactant CTAB caused precipitation of 1 due to strong electrostatic interactions, while the anionic SDS and neutral TX-100 surfactants did not exhibit any interaction at neutral pD. (1)H DOSY NMR spectroscopy indicated an interaction between 1 and zwitterionic surfactants Zw3-12 and CHAPS, which occurs via the positively charged ammonium group in the surfactant molecule. In the presence of anionic, neutral, and zwitterionic surfactants, 1 preserves its catalytic activity towards the hydrolysis of the peptide bond in the dipeptide glycyl-l-histidine (GH). The fastest hydrolysis was observed at pD 7.0 and could be rationalized by taking into account pD-dependent speciation of 1 and coordination properties of GH.
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- 2016
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36. Influence of the amino acid side chain on peptide bond hydrolysis catalyzed by a dimeric Zr(<scp>iv</scp>)-substituted Keggin type polyoxometalate
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Hong Giang T. Ly, Tatjana N. Parac-Vogt, and Gregory Absillis
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chemistry.chemical_classification ,animal structures ,010405 organic chemistry ,Chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Catalysis ,0104 chemical sciences ,Amino acid ,chemistry.chemical_compound ,Hydrolysis ,Nucleophile ,Amide ,Polyoxometalate ,Materials Chemistry ,Side chain ,Peptide bond ,Organic chemistry ,Deamidation - Abstract
Peptide bond hydrolysis of 18 different dipeptides, divided into four groups depending on the nature of the amino acid side chain, by the dimeric Zr(IV)-substituted Keggin type polyoxometalate (POM) (Et2NH2)8[{α-PW11O39Zr-(μ-OH)(H2O)}2]·7H2O (1) was studied by means of kinetic experiments and 1H/13C NMR spectroscopy. The observed rate constants highly depend on the bulkiness and chemical nature of the X amino acid side chain. X-Ser and X-Thr dipeptides showed increased reactivity due to intramolecular nucleophilic attack of the hydroxyl group in the side chain on the amide carbon, resulting in a reactive ester intermediate. A similar effect in which the amino acid side chain acted as an internal nucleophile was observed for the hydrolysis of Gly-Asp. Interestingly, in the presence of 1 deamidation of Gly-Asn and Gly-Gln into Gly-Asp and Gly-Glu was observed. Dipeptides containing positively charged amino acid side chains were hydrolyzed at higher rates due to electrostatic interactions between the negatively charged POM surface and positive amino acid side chains.
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- 2016
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37. Selectivity and Reactivity of ZrIV and CeIV Substituted Keggin Type Polyoxometalates Toward Cytochrome c in Surfactant Solutions
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Pavletta Shestakova, Thomas Quanten, Tatjana N. Parac-Vogt, and Tessa De Mayaer
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Circular dichroism ,Stereochemistry ,010402 general chemistry ,environment and public health ,01 natural sciences ,surfactants ,lcsh:Chemistry ,Hydrolysis ,chemistry.chemical_compound ,Pulmonary surfactant ,Chaps ,polyoxometalates ,Reactivity (chemistry) ,Keggin ,Heme ,biology ,010405 organic chemistry ,Chemistry ,Cytochrome c ,General Chemistry ,0104 chemical sciences ,enzymes and coenzymes (carbohydrates) ,cytochrome c ,hydrolysis ,lcsh:QD1-999 ,biology.protein ,sense organs ,protein ,Selectivity - Abstract
In this paper we investigate the effect of three different types of surfactants, on the hydrolysis of Cytochrome c (Cyt c), a predominantly α helical protein containing a heme group, promoted by [Ce(α PW11O39)2]10- (CeK) and [Zr(α PW11O39)2]10- (ZrK) polyoxometalates. In the presence of SDS, Zw3 12, or CHAPS surfactants, which are commonly used for solubilizing hydrophobic proteins, the specificity of CeK or ZrK toward hydrolysis of Cyt c does not change. However, the hydrolysis rate of Cyt c by CeK was increased in the presence of SDS, but decreased in the presence of CHAPS, and was nearly inhibited in the presence of Zw3 12. The Circular dichroism and Tryptophan fluorescence spectroscopy have shown that the structural changes in Cyt c caused by surfactants are similar to those caused by POMs, hence the same specificity in the absence or presence of surfactants was observed. The results also indicate that for Cyt c hydrolysis to occur, large unfolding of the protein is needed in order to accommodate the POMs. While SDS readily unfolds Cyt c, the protein remains largely folded in the presence of CHAPS and Zw3 12. Addition of POMs to Cyt c solutions in CHAPS results in unfolding of the structure allowing the interaction with POMs to occur and results in protein hydrolysis. Zw3 12, however, locks Cyt c in a conformation that resists unfolding upon addition of POM, and therefore results in nearly complete inhibition of protein hydrolysis. ispartof: FRONTIERS IN CHEMISTRY vol:6 issue:AUG ispartof: location:Switzerland status: published
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- 2018
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38. Keggin Structure, Quō Vādis?
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Aleksandar Kondinski and Tatjana N. Parac-Vogt
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clathrates ,Polymer science ,010405 organic chemistry ,kegginoid ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Structural chemistry ,structural chemistry ,0104 chemical sciences ,lcsh:Chemistry ,Chemistry ,chemistry.chemical_compound ,Keggin structure ,lcsh:QD1-999 ,chemistry ,Perspective ,metal oxides ,Polyoxometalate ,polyoxometalates ,Phosphotungstic acid - Abstract
Working under the supervisor of William Lawrence Bragg at the University of Manchester and being under the direct personal and scientific influence by Linus Pauling, Dr. James Fargher Keggin some 85 years ago published a highly unique discovery-the structure of phosphotungstic acid (Nature 1933, 131, 908-909). This structure sparked the reports of other related polyanions from Keggin's contemporaries, marking the true beginnings of structural polyoxometalate chemistry. In this perspective article, we unveil some aspects and applications of Keggin's structure and discuss how it has shaped the course of our understanding of polyoxometalate chemistry and nanomolecular metal oxides/hydroxides in general. ispartof: FRONTIERS IN CHEMISTRY vol:6 issue:AUG ispartof: location:Switzerland status: published
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- 2018
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39. Highly Amino Acid Selective Hydrolysis of Myoglobin at Aspartate Residues as Promoted by Zirconium(IV)-Substituted Polyoxometalates
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Gregory Absillis, Paul Proost, Tatjana N. Parac-Vogt, Rik Janssens, and Hong Giang T. Ly
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Models, Molecular ,animal structures ,Stereochemistry ,Catalysis ,Hydrolysis ,chemistry.chemical_compound ,Aspartic acid ,medicine ,Animals ,Organic chemistry ,Peptide bond ,Amino Acid Sequence ,Horses ,Peptide sequence ,chemistry.chemical_classification ,Aspartic Acid ,Edman degradation ,Myoglobin ,General Medicine ,General Chemistry ,Tungsten Compounds ,Human serum albumin ,Amino acid ,chemistry ,Zirconium ,sense organs ,medicine.drug - Abstract
SDS-PAGE/Edman degradation and HPLC MS/MS showed that zirconium(IV)-substituted Lindqvist-, Keggin-, and Wells-Dawson-type polyoxometalates (POMs) selectively hydrolyze the protein myoglobin at Asp-X peptide bonds under mildly acidic and neutral conditions. This transformation is the first example of highly sequence selective protein hydrolysis by POMs, a novel class of protein-hydrolyzing agents. The selectivity is directed by Asp residues located on the surface of the protein and is further assisted by electrostatic interactions between the negatively charged POMs and positively charged surface patches in the vicinity of the cleavage site.
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- 2015
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40. Potential theranostic and multimodal iron oxide nanoparticles decorated with rhenium–bipyridine and –phenanthroline complexes
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Sophie Carron, Maarten Bloemen, Sophie Laurent, Luce Vander Elst, Thierry Verbiest, and Tatjana N. Parac-Vogt
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Materials science ,Phenanthroline ,Inorganic chemistry ,Biomedical Engineering ,chemistry.chemical_element ,Nanoparticle ,General Chemistry ,General Medicine ,Rhenium ,Silane ,chemistry.chemical_compound ,Bipyridine ,chemistry ,General Materials Science ,Irradiation ,Luminescence ,Iron oxide nanoparticles - Abstract
Two structurally similar nanoparticles were designed for multimodal imaging and possible radiotherapy. The assembly consists of ultrasmall superparamagnetic iron oxide nanoparticles that act as contrast agents for MRI with a luminescent rhenium complex, for optical imaging, attached to the surface. Rhenium has the advantage of being luminescent and carries two radio-isotopes 186Re and 188Re making it possible to act as a contrast agent for SPECT (γ) and to be used for radiotherapy (β). The iron oxide nanoparticles were treated with a silane and further functionalized with picolyl. This picolyl was used to capture rhenium(I)(CO)3-1,10-phenanthroline (ReL1) or rhenium(I)(CO)3-2,2′-bipyridine (ReL2) and forms the final product Fe3O4-picolyl-rhenium(I)(CO)3-1,10-phenanthroline (IO-ReL1) or Fe3O4-silica-picolyl-rhenium(I)(CO)3-2,2′-bipyridine (IO-ReL2), respectively. All products were characterized properly (TEM, XRD, NMR, IR and TXRF) and a full investigation of the relaxometric and optical properties was conducted. Although iron oxide nanoparticles suffer from strong Rayleigh scattering, an efficient sensitized luminescence was observed and the orange emission wavelength was found to be 585 nm for IO-ReL1 and 592 nm for IO-ReL2 after irradiation at 395 nm. The relaxometric study of these ultrasmall nanoparticles showed very promising results. The r2 values measured at a magnetic field strength of 60 MHz of the nanoparticles being 92.9 mM−1 s−1 and 97.5 mM−1 s−1 for IO-ReL1 and IO-ReL2, respectively, were at least 1.5 times larger than Sinerem®. crosscheck: This document is CrossCheck deposited related_data: Supplementary Information identifier: Maarten Bloemen (ResearcherID) copyright_licence: The Royal Society of Chemistry has an exclusive publication licence for this journal copyright_licence: This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) history: Received 12 March 2015; Accepted 17 April 2015; Advance Article published 5 May 2015; Version of Record published 20 May 2015 ispartof: Journal of Materials Chemistry B: Materials for Biology and Medicine vol:3 issue:21 pages:4370-4376 ispartof: location:England status: published
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- 2015
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41. Selective protein purification by PEG–IDA-functionalized iron oxide nanoparticles
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Thierry Verbiest, Koen Clays, Nick Geukens, Maarten Bloemen, Louis Vanpraet, Matthias Ceulemans, Tatjana N. Parac-Vogt, and Ann Gils
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Chemistry ,Ligand ,General Chemical Engineering ,Metal ions in aqueous solution ,Inorganic chemistry ,General Chemistry ,Polyethylene glycol ,equipment and supplies ,chemistry.chemical_compound ,Covalent bond ,Protein purification ,PEG ratio ,Chelation ,human activities ,Iron oxide nanoparticles ,Nuclear chemistry - Abstract
We developed a new heterobifunctional polyethylene glycol ligand for iron oxide nanoparticles with a group for covalent surface attachment and for chelating metal ions. After introduction of nickel ions, His-tagged fluorescent proteins were magnetically purified from a cell lysate. A high purity product and efficient magnetic separation were observed.
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- 2015
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42. Polyoxometalates as sialidase mimics: selective and non-destructive removal of sialic acid from a glycoprotein promoted by phosphotungstic acid
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Laura S. Van Rompuy and Tatjana N. Parac-Vogt
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0301 basic medicine ,Stereochemistry ,010402 general chemistry ,Sialidase ,01 natural sciences ,Catalysis ,03 medical and health sciences ,Hydrolysis ,chemistry.chemical_compound ,Materials Chemistry ,Organic chemistry ,Peptide bond ,Phosphotungstic acid ,chemistry.chemical_classification ,Metals and Alloys ,Glycosidic bond ,General Chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Sialic acid ,030104 developmental biology ,chemistry ,Polyoxometalate ,Ceramics and Composites ,Liberation - Abstract
The selective hydrolysis of the glycosidic bond between the terminal sialic acid and the penultimate sugar has been achieved in the alpha-2-HS-glycoprotein (Fetuin-A) in the presence of H3PW12O40, a Keggin type polyoxometalate. A controlled liberation of sialic acid from the glycoprotein could be achieved at pH 3.0 and 37 °C without the destruction of the protein backbone.
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- 2017
43. Enantioselective Assembly of a Ruthenium(II) Polypyridyl Complex into a Double Helix
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Rik Van Deun, Peter Nockemann, Louis Vanpraet, Thomas Cardinaels, Tatjana N. Parac-Vogt, Koen Binnemans, Luc Van Meervelt, Kristof Van Hecke, and Jeroen Jacobs
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Models, Molecular ,Pyridines ,Stereochemistry ,double helix ,Stacking ,chemistry.chemical_element ,Crystal structure ,Catalysis ,supramolecular chemistry ,chemistry.chemical_compound ,enantiomer ,polypyridyl ,ruthenium ,Enantioselective synthesis ,Stereoisomerism ,General Chemistry ,DNA ,self-assembly ,General Medicine ,Ruthenium ,X-ray diffraction ,Crystallography ,chemistry ,Covalent bond ,Helix ,Ruthenium Compounds ,Racemic mixture ,Crystallization - Abstract
Evolution can increase the complexity of matter by self-organization into helical architectures, the best example being the DNA double helix. One common aspect, apparently shared by most of these architectures, is the presence of covalent bonds within the helix backbone. Here, we report the unprecedented crystal structures of a metal complex that self-organizes into a continuous double helical structure, assembled by non-covalent building blocks. Built up solely by weak stacking interactions, this alternating tread stairs-like double helical assembly mimics the DNA double helix structure. Starting from a racemic mixture in aqueous solution, the ruthenium(II) polypyridyl complex forms two polymorphic structures of a left-handed double helical assembly of only the Λ-enantiomer. The stacking of the helices is different in both polymorphs: a crossed woodpile structure versus a parallel columnar stacking. ispartof: Angewandte Chemie - International Edition vol:53 issue:34 pages:8959-8962 ispartof: location:Germany status: published
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- 2014
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44. Molecular Origin of the Hydrolytic Activity and Fixed Regioselectivity of a ZrIV-Substituted Polyoxotungstate as Artificial Protease
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Vincent Goovaerts, Gilles Bruylants, Paul Proost, Gregory Absillis, Eva Moelants, Tatjana N. Parac-Vogt, and Karen Stroobants
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regioselective protease ,Coordination sphere ,Stereochemistry ,zirconium ,Stereoisomerism ,Chimie organométallique ,Calorimetry ,Catalysis ,Hydrolysis ,Humans ,Chimie ,Peptide bond ,polyoxometalates ,Thermodynamique chimique ,Chimie macromoléculaire ,Serum Albumin ,Quenching (fluorescence) ,Edman degradation ,Chemistry ,Organic Chemistry ,Isothermal titration calorimetry ,General Chemistry ,Tungsten Compounds ,Kinetics ,Crystallography ,hydrolysis ,human serum albumin ,Polyoxometalate ,Thermodynamics ,Zirconium ,Peptide Hydrolases - Abstract
A multitechnique approach has been applied in order to identify the thermodynamic and kinetic parameters related to the regioselective hydrolysis of human serum albumin (HSA) promoted by the Wells-Dawson polyoxometalate (POM), K15H[Zr(α2-P2W17O 61)2]. Isothermal titration calorimetry (ITC) studies indicate that up to four POM molecules interact with HSA. While the first interaction site is characterized by a 1:1 binding and an affinity constant of 2×108M-1, the three remaining sites are characterized by a lower global affinity constant of 7×10 5M-1. The higher affinity constant at the first site is in accordance with a high quenching constant of 2.2×108M -1 obtained for fluorescence quenching of the Trp214 residue located in the only positively charged cleft of HSA, in the presence of K 15H[Zr(α2-P2W17O 61)2]. In addition, EuIII luminescence experiments with an EuIII-substituted POM analogue have shown the replacement of water molecules in the first coordination sphere of Eu III due to binding of the metal ion to amino acid side chain residues of HSA. All three interaction studies are in accordance with a stronger POM dominated binding at the positive cleft on the one hand, and interaction mainly governed by metal anchoring at the three remaining positions, on the other hand. Hydrolysis experiments in the presence of K15H[Zr(α 2-P2W17O61)2] have demonstrated regioselective cleavage of HSA at the Arg114-Leu115, Ala257-Asp258, Lys313-Asp314 or Cys392-Glu393 peptide bonds. This is in agreement with the interaction studies as the Arg114-Leu115 peptide bond is located in the positive cleft of HSA and the three remaining peptide bonds are each located near an upstream acidic residue, which can be expected to coordinate to the metal ion. A detailed kinetic study has evidenced the formation of additional fragments upon prolonged reaction times. Edman degradation of the additional reaction products has shown that these fragments result from further hydrolysis at the initially observed cleavage positions, indicating a fixed selectivity for K 15H[Zr(α2-P2W17O 61)2]. Making the cut: A multitechnique approach has been applied to the identification of the thermodynamic and kinetic parameters related to the regioselective hydrolysis of human serum albumin promoted by the Wells-Dawson polyoxometalate (POM), K15H[Zr(α2- P2W17O61)2] (see figure). All interaction studies are in accordance with the observed hydrolysis fragments which are the result of combined POM-dominated binding and interactions governed by metal anchoring. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim., SCOPUS: ar.j, FLWIN, info:eu-repo/semantics/published
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- 2014
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45. Regioselective Hydrolysis of Human Serum Albumin by ZrIV-Substituted Polyoxotungstates at the Interface of Positively Charged Protein Surface Patches and Negatively Charged Amino Acid Residues
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Gregory Absillis, Karen Stroobants, Paul Proost, Eva Moelants, and Tatjana N. Parac-Vogt
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Models, Molecular ,Stereochemistry ,Inorganic chemistry ,Plasma protein binding ,Cleavage (embryo) ,Catalysis ,Metal ,Hydrolysis ,medicine ,Humans ,Reactivity (chemistry) ,Amino Acids ,Serum Albumin ,Chemistry ,Organic Chemistry ,Regioselectivity ,Stereoisomerism ,General Chemistry ,Tungsten Compounds ,Human serum albumin ,humanities ,visual_art ,Polyoxometalate ,visual_art.visual_art_medium ,medicine.drug - Abstract
Complexes comprising the Lewis acidic Zr(IV) metal and protein binding polyoxotungstate ligands of Lindqvist-, Keggin- and Wells-Dawson-type were found to region selectively hydrolyze human serum albumin at four distinct positions. Higher reactivities were found for structures with higher polyoxometalate charges and the cleavage positions were found in protein regions of mixed charge. Both findings suggest an electrostatic nature of the observed reactivity.
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- 2014
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46. A Mechanistic Study of the Spontaneous Hydrolysis of Glycylserine as the Simplest Model for Protein Self-Cleavage
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Kristine Pierloot, Tzvetan Mihaylov, and Tatjana N. Parac-Vogt
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Models, Molecular ,Reaction mechanism ,Dipeptide ,Stereochemistry ,Hydrolysis ,Organic Chemistry ,Proteins ,Water ,Dipeptides ,General Chemistry ,Catalysis ,Serine ,chemistry.chemical_compound ,Residue (chemistry) ,Models, Chemical ,chemistry ,Amide ,Zwitterion ,Thermodynamics ,Peptide bond ,Cysteine - Abstract
A common feature of several classes of intrinsically reactive proteins with diverse biological functions is that they undergo self-catalyzed reactions initiated by an N→O or N→S acyl shift of a peptide bond adjacent to a serine, threonine, or cysteine residue. In this study, we examine the N→O acyl shift initiated peptide-bond hydrolysis at the serine residue on a model compound, glycylserine (GlySer), by means of DFT and ab initio methods. In the most favorable rate-determining transition state, the serine COO(-) group acts as a general base to accept a proton from the attacking OH function, which results in oxyoxazolidine ring closure. The calculated activation energy (29.4 kcal mol(-1) ) is in excellent agreement with the experimental value, 29.4 kcal mol(-1) , determined by (1) H NMR measurements. A reaction mechanism for the entire process of GlySer dipeptide hydrolysis is also proposed. In the case of proteins, we found that when no other groups that may act as a general base are available, the N→O acyl shift mechanism might instead involve a water-assisted proton transfer from the attacking serine OH group to the amide oxygen. However, the calculated energy barrier for this process is relatively high (33.6 kcal mol(-1) ), thus indicating that in absence of catalytic factors the peptide bond adjacent to serine is no longer a weak point in the protein backbone. An analogous rearrangement involving the amide N-protonated form, rather than the principle zwitterion form of GlySer, was also considered as a model for the previously proposed mechanism of sea-urchin sperm protein, enterokinase, and agrin (SEA) domain autoproteolysis. The calculated activation energy (14.3 kcal mol(-1) ) is significantly lower than the experimental value reported for SEA (≈21 kcal mol(-1) ), but is still in better agreement as compared to earlier theoretical attempts. ispartof: Chemistry - a European Journal vol:20 issue:2 pages:456-466 ispartof: location:Germany status: published
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- 2013
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47. Hydrolysis of Tetraglycine by a Zr(IV)-Substituted Wells–Dawson Polyoxotungstate Studied by Diffusion Ordered NMR Spectroscopy
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Pavletta Shestakova, Gregory Absillis, Tatjana N. Parac-Vogt, Rudolph Willem, and Karen Stroobants
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chemistry.chemical_classification ,Glycylglycine ,Diffusion ,Analytical chemistry ,Nanochemistry ,Peptide ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Condensed Matter Physics ,Biochemistry ,Catalysis ,Crystallography ,chemistry.chemical_compound ,Hydrolysis ,chemistry ,Proton NMR ,General Materials Science - Abstract
The use of diffusion ordered NMR spectroscopy (DOSY) for the analysis of complex reaction mixtures involving polyoxometalates (POMs) was demonstrated for the hydrolysis of the peptide tetraglycine by the K15H[Zr(α2-P2W17O61)2]·25H2O Wells–Dawson type cluster. 1H DOSY NMR studies have shown that severe signal overlap observed in the one-dimensional 1H NMR spectrum of reaction mixtures containing a POM and peptides could be overcome by the two-dimensional character of a DOSY NMR measurement. A clear distinction between the 1H NMR signals of the products formed during the hydrolysis of 5.0 mM of tetraglycine catalyzed by 1.0 mM of K15H[Zr(α2-P2W17O61)2]·25H2O was observed based on the extra dimension containing information about diffusion coefficients that distinguishes a typical DOSY measurement from conventionally used 1D 1H NMR. The spectrum clearly shows the presence of 5 species with diffusion coefficients of 3.71 × 10−10 m2/s (3.91; 3.84; 3.82 and 3.62 ppm), 4.39 × 10−10 m2/s (3.87; 3.76 and 3.61 ppm), 5.26 × 10−10 m2/s (3.67 and 3.63 ppm), and 7.46 × 10−10 m2/s (3.37 ppm) that are assigned to the non-hydrolyzed tetraglycine, the hydrolysis intermediate products triglycine and glycylglycine, and the end product of hydrolysis glycine, respectively. In addition, a signal assigned to cyclic glycylglycine, with a diffusion coefficient practically identical to the diffusion coefficient of glycylglycine was observed at 3.86 ppm. In addition, 1H and 31P NMR spectroscopy were further used to study the binding of tetraglycine to K15H[Zr(α2-P2W17O61)2]·25H2O and the solution speciation of K15H[Zr(α2-P2W17O61)2]·25H2O.
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- 2013
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48. Probing polyoxometalate-protein interactions using molecular dynamics simulations
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Josep M. Poblet, Jorge J. Carbó, Karen Stroobants, Gregory Absillis, Tatjana N. Parac-Vogt, Pablo Jiménez-Lozano, Jonathan D. Hirst, Albert Solé-Daura, Vincent Goovaerts, Química Quàntica, Química Física i Inorgànica, and Universitat Rovira i Virgili
- Subjects
Polioxometal·lats ,Dimer ,Inorganic chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,Protein–protein interaction ,Metal ,chemistry.chemical_compound ,Molecular dynamics ,Side chain ,polyoxometalates ,Dinàmica molecular ,010405 organic chemistry ,Hydrogen bond ,Chemistry ,Organic Chemistry ,General Chemistry ,Química ,proteins ,molecular dynamics ,0104 chemical sciences ,Crystallography ,visual_art ,Polyoxometalate ,1521-3765 ,visual_art.visual_art_medium ,Selectivity ,Proteïnes - Abstract
DOI: 10.1002/chem.201602263 URL: http://onlinelibrary.wiley.com/doi/10.1002/chem.201602263/abstract;jsessionid=A78A0F5D7DA73B8D67E1019C41603BD2.f02t02?systemMessage=Due+to+essential+maintenance+the+subscribe%2Frenew+pages+will+be+unavailable+on+Wednesday+26+October+between+02%3A00+-+08%3A00+BST%2F+09%3A00+%E2%80%93+15%3A00++SGT%2F+21%3A00-+03%3A00+EDT.+Apologies+for+the+inconvenience. Filiació URV: SI Inclòs a la memòria: SI The molecular interactions between the CeIV-substituted Keggin anion [PW11O39Ce(OH2)4]3− (CeK) and hen egg-white lysozyme (HEWL) were investigated by molecular dynamics simulations. The analysis of CeK was compared with the CeIV-substituted Keggin dimer [(PW11O39)2Ce]10− (CeK2) and the ZrIV-substituted Lindqvist anion [W5O18Zr(OH2)(OH)]3− (ZrL) to understand how POM features such as shape, size, charge, or type of incorporated metal ion influence the POM⋅⋅⋅protein interactions. Simulations revealed two regions of the protein in which the CeK anion interacts strongly: cationic sites formed by Arg21 and by Arg45 and Arg68. The POMs chiefly interact with the side chains of the positively charged (arginines, lysines) and the polar uncharged residues (tyrosines, serines, aspargines) via electrostatic attraction and hydrogen bonding with the oxygen atoms of the POM framework. The CeK anion shows higher protein affinity than the CeK2 and ZrL anions, because it is less hydrophilic and it has the right size and shape for establishing interactions with several residues simultaneously. The larger, more negatively charged CeK2 anion has a high solvent-accessible surface, which is sub-optimal for the interaction, while the smaller ZrL anion is highly hydrophilic and cannot efficiently interact with several residues simultaneously.
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- 2016
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49. Following the stability of amphiphilic nanoaggregates by using intermolecular energy transfer
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L. Vander Elst, Hideaki Mizuno, Michael Harris, Tatjana N. Parac-Vogt, Elke Debroye, Yasuhiko Fujita, and H. De Keersmaecker
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Stereochemistry ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Micelle ,Catalysis ,HeLa ,Amphiphile ,Materials Chemistry ,Fluorescence microscope ,Rotational correlation time ,biology ,Chemistry ,Metals and Alloys ,General Chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Targeted drug delivery ,Drug delivery ,Ceramics and Composites ,Biophysics ,0210 nano-technology ,Fetal bovine serum - Abstract
An intermolecular energy transfer system is developed for studying the stability of nanoaggregate(s) (NAs) in complex solution and cell culture by one- and two-photon fluorescence microscopy and optical imaging. The system allows facile addition of one or more tumor targeting molecules, one of which is exemplified here. NAs functionalized with an MRI and optical probe, with and without folic acid, remain stable in fetal bovine serum for at least 4 hours. HeLa cell cultures showed a clear difference between NAs non-targeted and targeted to folate receptors, with both NAs appearing to be taken up by the cells through different mechanisms. An MRI relaxivity, r1, of 9 mM-1 s-1 at 310 K and 1.4 T was measured associated with the increased rotational correlation time of the NAs. These NAs may have application in the targeted drug delivery of hydrophobic drugs such as doxorubicin (DOX). crosscheck: This document is CrossCheck deposited related_data: Supplementary Information copyright_licence: The Royal Society of Chemistry has an exclusive publication licence for this journal copyright_licence: This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) history: Received 22 September 2016; Accepted 18 October 2016; Accepted Manuscript published 18 October 2016; Advance Article published 27 October 2016; Version of Record published 8 November 2016 ispartof: CHEMICAL COMMUNICATIONS vol:52 issue:91 pages:13385-13388 ispartof: location:England status: published
- Published
- 2016
50. A Self-Assembled Complex with a Titanium(IV) Catecholate Core as a Potential Bimodal Contrast Agent
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Sophie Laurent, Kristof Kimpe, Geert Dehaen, Wim Dehaen, Robert N. Muller, Luce Vander Elst, Svetlana V. Eliseeva, Koen Binnemans, and Tatjana N. Parac-Vogt
- Subjects
Lanthanide ,Magnetic Resonance Spectroscopy ,Gadolinium ,Catechols ,Supramolecular chemistry ,Contrast Media ,chemistry.chemical_element ,Lanthanoid Series Elements ,Catalysis ,Organometallic Compounds ,medicine ,Molecule ,Chelation ,Titanium ,Organic Chemistry ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Pentetic Acid ,Human serum albumin ,Crystallography ,Models, Chemical ,chemistry ,Luminescence ,Nuclear chemistry ,medicine.drug - Abstract
A ditopic chelating ligand (H(6)4) that bears catechol and diethylenetriamine-N,N,N',N'',N''-pentaacetate (DTPA) has been designed and shown to specifically bind lanthanide(III) ions at the DTPA core ([Ln(H(2)4)(H(2)O)](-)) and further self-assemble with titanium(IV), thereby giving rise to the formation of a supramolecular metallostar complex with a lanthanide(III)-to-titanium(IV) ratio of 3:1, [(Ln4)(3)Ti(H(2)O)(3)](5-) (Ln=La, Eu, Gd). The efficacy of the metallostar complex as a potential bimodal optical/magnetic resonance imaging (MRI) agent has been evaluated. Nuclear magnetic relaxation dispersion (NMRD) measurements for the [(Gd4)(3)Ti(H(2)O)(3)](5-) complex have demonstrated an enhanced r(1) relaxivity that corresponds to 36.9 s(-1) mM(-1) per metallostar molecule at 20 MHz and 310 K, which is a result of a decreased tumbling rate. The ability of the complex to bind to human serum albumin (HSA) was also examined by relaxometric measurements. In addition, upon UV irradiation the [(Gd4)(3)Ti(H(2)O)(3)](5-) complex exhibits broad-band green emission in the range 400-750 nm with a maximum at 490 nm. Taking into account the high relaxivity and luminescence properties, the [(Gd4)(3)Ti(H(2)O)(3)](5-) complex is a good lead compound for the development of efficient bimodal contrast agents.
- Published
- 2011
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