13 results on '"Christopher S. Ward"'
Search Results
2. Development of a Closed Loop Feature Detection Platform for Automated Neonate Cardio‐Respiratory Measurements
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Christopher S. Ward, Eunice Aissi, and Russell S. Ray
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Computer science ,business.industry ,Genetics ,Pattern recognition ,Artificial intelligence ,business ,Molecular Biology ,Biochemistry ,Closed loop ,Biotechnology ,Feature detection (computer vision) - Published
- 2020
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3. Genetic rodent models of brain disorders: Perspectives on experimental approaches and therapeutic strategies
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Rodney C. Samaco, Christopher M. McGraw, and Christopher S. Ward
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0301 basic medicine ,medicine.medical_specialty ,Psychological intervention ,Behavioral neuroscience ,03 medical and health sciences ,Mice ,0302 clinical medicine ,CNS disorders ,Genetic model ,Genetics ,preclinical ,Medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,behavioral genetics ,Psychiatry ,Intensive care medicine ,Genetics (clinical) ,Behavioural genetics ,Brain Diseases ,business.industry ,Mechanism (biology) ,Mental Disorders ,Disease mechanisms ,rodent models ,3. Good health ,Clinical trial ,Disease Models, Animal ,030104 developmental biology ,Neurodevelopmental Disorders ,Commentary ,Heredodegenerative Disorders, Nervous System ,behavioral neuroscience ,business ,030217 neurology & neurosurgery - Abstract
Neurobehavioral disorders comprised of neurodegenerative, neurodevelopmental, and psychiatric disorders together represent leading causes of morbidity and mortality. Despite significant academic research and industry efforts to elucidate the disease mechanisms operative in these disorders and to develop mechanism-based therapies, our understanding remains incomplete and our access to tractable therapeutic interventions severely limited. The magnitude of these short-comings can be measured by the growing list of disappointing clinical trials based on initially promising compounds identified in genetic animal models. This review and commentary will explore why this may be so, focusing on the central role that genetic models of neurobehavioral disorders have come to occupy in current efforts to identify disease mechanisms and therapies. In particular, we will highlight the unique pitfalls and challenges that have hampered success in these models as compared to genetic models of non-neurological diseases as well as to symptom-based models of the early 20th century that led to the discovery of all major classes of psychoactive pharmaceutical compounds still used today. Using examples from specific genetic rodent models of human neurobehavioral disorders, we will highlight issues of reproducibility, construct validity, and translational relevance in the hopes that these examples will be instructive toward greater success in future endeavors. Lastly, we will champion a two-pronged approach toward identifying novel therapies for neurobehavioral disorders that makes greater use of the historically more successful symptom-based approaches in addition to more mechanism-based approaches.
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- 2017
4. Loss of MeCP2 Causes Urological Dysfunction and Contributes to Death by Kidney Failure in Mouse Models of Rett Syndrome
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Walter E. Kaufmann, Jeffrey L. Neul, Meagan R. Pitcher, Rodney C. Samaco, Daniel G. Glaze, Christopher S. Ward, José A. Herrera, Teng-Wei Huang, Alan K. Percy, Steven A. Skinner, Alan Herron, and Landsberger, Nicoletta
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0301 basic medicine ,Gerontology ,Male ,Kidney Disease ,Heredity ,Databases, Factual ,Physiology ,Genetic Linkage ,Methyl-CpG-Binding Protein 2 ,lcsh:Medicine ,Social Sciences ,Gene Expression ,Penetrance ,Neurodegenerative ,Urine ,Congenital ,Mice ,0302 clinical medicine ,Neurodevelopmental disorder ,Medicine and Health Sciences ,2.1 Biological and endogenous factors ,Psychology ,Renal Insufficiency ,Aetiology ,lcsh:Science ,media_common ,Pediatric ,Mammals ,Multidisciplinary ,Animal Models ,3. Good health ,Body Fluids ,X-Linked Traits ,Sex Linkage ,Vertebrates ,Female ,medicine.symptom ,Anatomy ,Research Article ,Urologic Diseases ,medicine.medical_specialty ,congenital, hereditary, and neonatal diseases and abnormalities ,Urethral Obstruction ,General Science & Technology ,media_common.quotation_subject ,Urology ,Bladder ,Renal and urogenital ,Urination ,Rett syndrome ,Mouse Models ,Research and Analysis Methods ,Rodents ,MECP2 ,Databases ,03 medical and health sciences ,Rare Diseases ,Model Organisms ,Species Specificity ,medicine ,Rett Syndrome ,Genetics ,Animals ,Humans ,Factual ,Clinical Genetics ,Animal ,business.industry ,Urinary retention ,lcsh:R ,Genetic strain ,Organisms ,Biology and Life Sciences ,Kidneys ,Renal System ,Urinary Retention ,medicine.disease ,Survival Analysis ,Brain Disorders ,Disease Models, Animal ,Good Health and Well Being ,030104 developmental biology ,Disease Models ,Amniotes ,Developmental Psychology ,Mutation ,lcsh:Q ,Kidney stones ,business ,Physiological Processes ,030217 neurology & neurosurgery - Abstract
Rett Syndrome (RTT) is a neurodevelopmental disorder characterized by loss of acquired skills during development, autonomic dysfunction, and an increased risk for premature lethality. Clinical experience identified a subset of individuals with RTT that present with urological dysfunction including individuals with frequent urinary tract infections, kidney stones, and urine retention requiring frequent catheterization for bladder voiding. To determine if urologic dysfunction is a feature of RTT, we queried the Rett Syndrome Natural History Study, a repository of clinical data from over 1000 individuals with RTT and found multiple instances of urological dysfunction. We then evaluated urological function in a mouse model of RTT and found an abnormal pattern of micturition. Both male and female mice possessing Mecp2 mutations show a decrease in urine output per micturition event. Furthermore, we identified signs of kidney failure secondary to urethral obstruction. Although genetic strain background significantly affects both survival and penetrance of the urethral obstruction phenotype, survival and penetrance of urethral obstruction do not directly correlate. We have identified an additional phenotype caused by loss of MeCP2, urological dysfunction. Furthermore, we urge caution in the interpretation of survival data as an endpoint in preclinical studies, especially where causes of mortality are poorly characterized.
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- 2016
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5. Methyl-CpG binding-protein 2 function in cholinergic neurons mediates cardiac arrhythmogenesis
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Xander H.T. Wehrens, José A. Herrera, Jeffrey L. Neul, and Christopher S. Ward
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0301 basic medicine ,Atropine ,Male ,Methyl-CpG-Binding Protein 2 ,Neurodegenerative ,Arrhythmias ,Cardiovascular ,Inbred C57BL ,Medical and Health Sciences ,Parasympathetic nervous system ,Mice ,0302 clinical medicine ,Genetics (clinical) ,Mice, Knockout ,Pediatric ,Genetics & Heredity ,Heart ,General Medicine ,Articles ,Biological Sciences ,Cholinergic Neurons ,Death ,medicine.anatomical_structure ,Heart Disease ,Phenotype ,cardiovascular system ,Female ,medicine.symptom ,Cardiac ,medicine.medical_specialty ,congenital, hereditary, and neonatal diseases and abnormalities ,Knockout ,Biology ,Sudden death ,MECP2 ,03 medical and health sciences ,Rare Diseases ,Parasympathetic Nervous System ,Internal medicine ,Heart rate ,mental disorders ,Genetics ,medicine ,Rett Syndrome ,Animals ,Cholinergic neuron ,Molecular Biology ,Animal ,Neurosciences ,Cardiac arrhythmia ,Arrhythmias, Cardiac ,Hypothermia ,Sudden ,Brain Disorders ,Mice, Inbred C57BL ,Autonomic nervous system ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,Death, Sudden, Cardiac ,Disease Models ,030217 neurology & neurosurgery - Abstract
Sudden unexpected death occurs in one quarter of deaths in Rett Syndrome (RTT), a neurodevelopmental disorder caused by mutations in Methyl-CpG-binding protein 2 (MECP2). People with RTT show a variety of autonomic nervous system (ANS) abnormalities and mouse models show similar problems including QTc interval prolongation and hypothermia. To explore the role of cardiac problems in sudden death in RTT, we characterized cardiac rhythm in mice lacking Mecp2 function. Male and female mutant mice exhibited spontaneous cardiac rhythm abnormalities including bradycardic events, sinus pauses, atrioventricular block, premature ventricular contractions, non-sustained ventricular arrhythmias, and increased heart rate variability. Death was associated with spontaneous cardiac arrhythmias and complete conduction block. Atropine treatment reduced cardiac arrhythmias in mutant mice, implicating overactive parasympathetic tone. To explore the role of MeCP2 within the parasympathetic neurons, we selectively removed MeCP2 function from cholinergic neurons (MeCP2 ChAT KO), which recapitulated the cardiac rhythm abnormalities, hypothermia, and early death seen in RTT male mice. Conversely, restoring MeCP2 only in cholinergic neurons rescued these phenotypes. Thus, MeCP2 in cholinergic neurons is necessary and sufficient for autonomic cardiac control, thermoregulation, and survival, and targeting the overactive parasympathetic system may be a useful therapeutic strategy to prevent sudden unexpected death in RTT.
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- 2016
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6. THE POLYCYSTIC KIDNEY-DISEASE-1 GENE ENCODES A 14-KB TRANSCRIPT AND LIES WITHIN A DUPLICATED REGION ON CHROMOSOME-16
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Isabel Cordeiro, Phillip T. Brook-Carter, Douglas R. Higgs, Jim R. Hughes, Lia Spruit, Heloisa Santos, Arjenne L. W. Hesseling-Janssen, C. Ratcliffe, Martijn H. Breuning, Peter C. Harris, Dick Lindhout, S. Verhoef, Dorien J.M. Peters, Jeroen H. Roelfsema, Peter Buckle, Ans M.W. van den Ouweland, Hans G. Dauwerse, Mark Nellist, Magitha M. Maheshwar, Bert Eussen, Belén Peral, Peter Kearney, Bart Janssen, Julian R. Sampson, Jackie Sloane-Stanley, Dicky J. J. Halley, Pedro Cabral, A MacCarthy, Christopher S. Ward, Jasper J. Saris, Vicki Gamble, and Siep Thomas
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Genetics ,0303 health sciences ,education.field_of_study ,PKD1 ,urogenital system ,030232 urology & nephrology ,Locus (genetics) ,Chromosomal translocation ,Biology ,urologic and male genital diseases ,medicine.disease ,Molecular biology ,female genital diseases and pregnancy complications ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Chromosome 16 ,Polycystin 2 ,embryonic structures ,RNA splicing ,Polycystic kidney disease ,medicine ,education ,Gene ,030304 developmental biology - Abstract
textabstractAutosomal dominant polycystic kidney disease (ADPKD) is a common genetic disorder that frequently results in renal fallure due to progressive cyst development. The major locus, PKD1, maps to 16p13.3. We identified a chromosome translocation associated with ADPKD that disrupts a gene (PBP) encoding a 14 kb transcript in the PKD1 candidate region. Further mutations of the PBP gene were found in PKD1 patients, two deletions (one a de novo event) and a splicing defect, confirming that PBP is the PKD1 gene. This gene is located adjacent to the TSC2 locus in a genomic region that is reiterated more proximally on 16p. The duplicate area encodes three transcripts substantially homologous to the PKD1 transcript. Partial sequence analysis of the PKD1 transcript shows that it encodes a novel protein whose function is at present unknown.
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- 2016
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7. Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome
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Surabi Veeraragavan, Agnes J. Liang, Sirena Soriano, Janine M. LaSalle, Christopher S. Ward, Rodney C. Samaco, Jennie R. Green, Zhandong Liu, Shannon M. Hamilton, Ying Wooi Wan, Lisa Yuva, Daniel R. Connolly, Dag H. Yasui, Meagan R. Pitcher, Jeffrey L. Neul, Richard Paylor, Sharon G. Huang, and Christopher M. McGraw
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0301 basic medicine ,Predictive validity ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,Methyl-CpG-Binding Protein 2 ,Rett syndrome ,Biology ,medicine.disease_cause ,MECP2 ,Rats, Sprague-Dawley ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Neurodevelopmental disorder ,Genetics ,medicine ,Rett Syndrome ,Animals ,Humans ,Molecular Biology ,Genetics (clinical) ,Face validity ,Mutation ,Behavior, Animal ,Laboratory mouse ,General Medicine ,Articles ,medicine.disease ,Regression ,Rats ,Disease Models, Animal ,030104 developmental biology ,Female ,Rats, Transgenic ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Mouse models of the transcriptional modulator Methyl-CpG-Binding Protein 2 (MeCP2) have advanced our understanding of Rett syndrome (RTT). RTT is a 'prototypical' neurodevelopmental disorder with many clinical features overlapping with other intellectual and developmental disabilities (IDD). Therapeutic interventions for RTT may therefore have broader applications. However, the reliance on the laboratory mouse to identify viable therapies for the human condition may present challenges in translating findings from the bench to the clinic. In addition, the need to identify outcome measures in well-chosen animal models is critical for preclinical trials. Here, we report that a novel Mecp2 rat model displays high face validity for modelling psychomotor regression of a learned skill, a deficit that has not been shown in Mecp2 mice. Juvenile play, a behavioural feature that is uniquely present in rats and not mice, is also impaired in female Mecp2 rats. Finally, we demonstrate that evaluating the molecular consequences of the loss of MeCP2 in both mouse and rat may result in higher predictive validity with respect to transcriptional changes in the human RTT brain. These data underscore the similarities and differences caused by the loss of MeCP2 among divergent rodent species which may have important implications for the treatment of individuals with disease-causing MECP2 mutations. Taken together, these findings demonstrate that the Mecp2 rat model is a complementary tool with unique features for the study of RTT and highlight the potential benefit of cross-species analyses in identifying potential disease-relevant preclinical outcome measures.
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- 2016
8. 155. Contactin-Associated Protein-Like 2 Deficiency in Juvenile Rats Recapitulates the Broad Phenotypic Spectrum in CNTNAP2-Related Disorders
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Pedro Albelda de la Haza, Lisa Yuva, Sirena Soriano, Rodney C. Samaco, Agnes J. Liang, Surabi Veeraragavan, Christopher S. Ward, Richard Paylor, and Daniel R. Connolly
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Genetics ,CNTNAP2 ,Juvenile ,Biology ,Phenotype ,Biological Psychiatry ,CONTACTIN-ASSOCIATED PROTEIN - Published
- 2017
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9. Insulinotropic treatments exacerbate metabolic syndrome in mice lacking MeCP2 function
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Christopher A. Chapleau, Andreas Hoeflich, Friedrich Metzger, Christopher S. Ward, Meagan R. Pitcher, Manaswini Sivaramakrishnan, Lucas Pozzo-Miller, E. Melissa Arvide, Jeffrey L. Neul, and Stefanie Saenger
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Male ,congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Methyl-CpG-Binding Protein 2 ,medicine.medical_treatment ,Longevity ,Rett syndrome ,Biology ,MECP2 ,Mice ,Heart Rate ,Hyperinsulinism ,Internal medicine ,Heart rate ,Genetics ,medicine ,Animals ,Insulin-Like Growth Factor I ,Molecular Biology ,Genetics (clinical) ,Metabolic Syndrome ,Mice, Knockout ,Behavior, Animal ,Growth factor ,Insulin ,life spansymptom aggravating factors ,heart rate ,insulin-like growth factor i ,insulin ,metabolic syndrome x ,inspiration ,phenotype ,Body Weight ,Null (mathematics) ,Articles ,General Medicine ,medicine.disease ,Phenotype ,Disease Models, Animal ,Endocrinology ,Female ,Metabolic syndrome - Abstract
Rett syndrome (RTT), an X-linked postnatal disorder, results from mutations in Methyl CpG-binding protein 2 (MECP2). Survival and breathing in Mecp2(NULL/Y) animals are improved by an N-terminal tripeptide of insulin-like growth factor I (IGF-I) treatment. We determined that Mecp2(NULL/Y) animals also have a metabolic syndrome and investigated whether IGF-I treatment might improve this phenotype. Mecp2(NULL/Y) mice were treated with a full-length IGF-I modified with the addition of polyethylene glycol (PEG-IGF-I), which improves pharmacological properties. Low-dose PEG-IGF-I treatment slightly improved lifespan and heart rate in Mecp2(NULL/Y) mice; however, high-dose PEG-IGF-I decreased lifespan. To determine whether insulinotropic off-target effects of PEG-IGF-I caused the detrimental effect, we treated Mecp2(NULL/Y) mice with insulin, which also decreased lifespan. Thus, the clinical benefit of IGF-I treatment in RTT may critically depend on the dose used, and caution should be taken when initiating clinical trials with these compounds because the beneficial therapeutic window is narrow.
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- 2013
10. Female Mecp2(+/-) mice display robust behavioral deficits on two different genetic backgrounds providing a framework for pre-clinical studies
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Jeffrey L. Neul, Christopher M. McGraw, Christopher S. Ward, Huda Y. Zoghbi, Yaling Sun, and Rodney C. Samaco
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Male ,congenital, hereditary, and neonatal diseases and abnormalities ,Reflex, Startle ,Methyl-CpG-Binding Protein 2 ,Period (gene) ,Rett syndrome ,Neurological disorder ,Biology ,Motor Activity ,Weight Gain ,X-inactivation ,MECP2 ,Pathogenesis ,Mice ,X Chromosome Inactivation ,mental disorders ,Genetics ,medicine ,Avoidance Learning ,Animals ,Social Behavior ,Molecular Biology ,Gene ,Genetics (clinical) ,Behavior, Animal ,Respiration ,General Medicine ,Fear ,Articles ,medicine.disease ,Phenotype ,nervous system diseases ,Female - Abstract
Rett syndrome (RTT) is an X-linked neurological disorder caused by mutations in the gene encoding the transcriptional modulator methyl-CpG-binding protein 2 (MeCP2). Typical RTT primarily affects girls and is characterized by a brief period of apparently normal development followed by the loss of purposeful hand skills and language, the onset of anxiety, hand stereotypies, autistic features, seizures and autonomic dysfunction. Mecp2 mouse models have extensively been studied to demonstrate the functional link between MeCP2 dysfunction and RTT pathogenesis. However, the majority of studies have focused primarily on the molecular and behavioral consequences of the complete absence of MeCP2 in male mice. Studies of female Mecp2(+/-) mice have been limited because of potential phenotypic variability due to X chromosome inactivation effects. To determine whether reproducible and reliable phenotypes can be detected Mecp2(+/-) mice, we analyzed Mecp2(+/-) mice of two different F1 hybrid isogenic backgrounds and at young and old ages using several neurobehavioral and physiological assays. Here, we report a multitude of phenotypes in female Mecp2(+/-) mice, some presenting as early as 5 weeks of life. We demonstrate that Mecp2(+/-) mice recapitulate several aspects of typical RTT and show that mosaic expression of MeCP2 does not preclude the use of female mice in behavioral and molecular studies. Importantly, we uncover several behavioral abnormalities that are present in two genetic backgrounds and report on phenotypes that are unique to one background. These findings provide a framework for pre-clinical studies aimed at improving the constellation of phenotypes in a mouse model of RTT.
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- 2012
11. Regional rescue of spinocerebellar ataxia type 1 phenotypes by 14-3-3epsilon haploinsufficiency in mice underscores complex pathogenicity in neurodegeneration
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Ronald Richman, Paymaan Jafar-Nejad, Huda Y. Zoghbi, Harry T. Orr, and Christopher S. Ward
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Spinocerebellar Ataxia Type 1 ,Cerebellum ,Ataxin 1 ,Nerve Tissue Proteins ,Haploinsufficiency ,Cell Line ,Mice ,medicine ,Animals ,Humans ,Spinocerebellar Ataxias ,Allele ,Alleles ,Ataxin-1 ,Genetics ,Multidisciplinary ,biology ,Neurodegeneration ,Brain ,Nuclear Proteins ,Polyglutamine tract ,Biological Sciences ,medicine.disease ,medicine.anatomical_structure ,Phenotype ,14-3-3 Proteins ,Ataxins ,biology.protein ,Spinocerebellar ataxia - Abstract
Spinocerebellar ataxia type 1 (SCA1) is a neurodegenerative disease caused by the expansion of a CAG repeat encoding a polyglutamine tract in Ataxin-1 (ATXN1). Both WT and mutant ATXN1 interact with 14-3-3 proteins, and 14-3-3 overexpression stabilizes ATXN1 levels in cells and increases ATXN1 toxicity in flies. To determine whether reducing 14-3-3 levels might mitigate SCA1 pathogenesis, we bred Sca1 154Q/+ mice to mice lacking one allele of 14-3-3 ε. 14-3-3 ε haploinsufficiency rescued cerebellar pathology and motor phenotypes but, surprisingly, not weight loss, respiratory dysfunction, or premature lethality. Biochemical studies revealed that reducing 14-3-3 ε levels exerted different effects in two brain regions especially vulnerable in SCA1: Although diminishing levels of both WT and mutant ATXN1 in the cerebellum, 14-3-3 ε haploinsufficiency did not alter ATXN1 levels in the brainstem. Furthermore, 14-3-3 ε haploinsufficiency decreased the incorporation of expanded ATXN1 into its large toxic complexes in the cerebellum but not in the brainstem, and the distribution of ATXN1’s small and large native complexes differed significantly between the two regions. These data suggest that distinct pathogenic mechanisms operate in different vulnerable brain regions, adding another level of complexity to SCA1 pathogenesis.
- Published
- 2011
12. A Multi-Step Pathway for the Establishment of Sister Chromatid Cohesion
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Robert V. Skibbens, Elçin Ünal, Christopher S. Ward, Douglas Koshland, and Mark Milutinovich
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Yeast and Fungi ,Cancer Research ,Saccharomyces cerevisiae Proteins ,lcsh:QH426-470 ,Chromosomal Proteins, Non-Histone ,Molecular Sequence Data ,Cell Cycle Proteins ,Saccharomyces cerevisiae ,Biology ,Chromatids ,Regulatory Sequences, Nucleic Acid ,S Phase ,Saccharomyces ,03 medical and health sciences ,0302 clinical medicine ,Acetyltransferases ,Centromere ,Genetics ,Sister chromatids ,Amino Acid Sequence ,Molecular Biology ,Alleles ,Genetics (clinical) ,Ecology, Evolution, Behavior and Systematics ,Genes, Dominant ,030304 developmental biology ,0303 health sciences ,Cohesin ,Kinetochore ,Chromatin binding ,030302 biochemistry & molecular biology ,Nuclear Proteins ,Genetics and Genomics ,Spindle apparatus ,Protein Structure, Tertiary ,Establishment of sister chromatid cohesion ,Chromosome Pairing ,Mutagenesis, Insertional ,lcsh:Genetics ,Mutant Proteins ,Separase ,Chromosomes, Fungal ,biological phenomena, cell phenomena, and immunity ,030217 neurology & neurosurgery ,Research Article ,Protein Binding - Abstract
The cohesion of sister chromatids is mediated by cohesin, a protein complex containing members of the structural maintenance of chromosome (Smc) family. How cohesins tether sister chromatids is not yet understood. Here, we mutate SMC1, the gene encoding a cohesin subunit of budding yeast, by random insertion dominant negative mutagenesis to generate alleles that are highly informative for cohesin assembly and function. Cohesins mutated in the Hinge or Loop1 regions of Smc1 bind chromatin by a mechanism similar to wild-type cohesin, but fail to enrich at cohesin-associated regions (CARs) and pericentric regions. Hence, the Hinge and Loop1 regions of Smc1 are essential for the specific chromatin binding of cohesin. This specific binding and a subsequent Ctf7/Eco1-dependent step are both required for the establishment of cohesion. We propose that a cohesin or cohesin oligomer tethers the sister chromatids through two chromatin-binding events that are regulated spatially by CAR binding and temporally by Ctf7 activation, to ensure cohesins crosslink only sister chromatids., Author Summary Complexes containing members of the structural maintenance of chromosomes (Smc) family regulate higher order chromosome architecture in diverse aspects of DNA metabolism including chromosome condensation, sister chromatid cohesion, DNA repair, and global control of transcription. Smc complexes are thought to regulate higher order chromosome folding by tethering together two strands of chromatin. However, the mechanism of tethering is poorly understood in part because of a poor understanding of the function of the core Smc subunits. To gain insight into the structure and function of Smc subunits, we developed a novel strategy of mutagenesis called random insertion dominant negative (RID), which generates informative alleles with high efficiency and should provide an effective tool to study any multi-subunit complex. Using RID we generated novel alleles of a Smc subunit from the cohesin complex. The cohesin complex tethers together newly replicated chromosomes (sister chromatids). The analyses of these RID mutants suggest that the tethering activity of cohesin (and possibly other Smc complexes) is generated by two sequential chromatin-binding events (first the capture of one piece of chromatin followed by the capture of the second piece of chromatin), which are regulated both spatially and temporally. We speculate that the spatial and temporal regulation of cohesin ensures that it tethers together only sister chromatids rather than randomly crosslinking the entire genome.
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- 2005
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13. rRNA Promoter Regulation by Nonoptimal Binding of σ Region 1.2: An Additional Recognition Element for RNA Polymerase
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Shanil P. Haugen, Wilma Ross, Christopher S. Ward, Richard L. Gourse, Melanie B. Berkmen, and Tamas Gaal
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Models, Molecular ,Transcription, Genetic ,DNA Footprinting ,Repressor ,DNA footprinting ,Sigma Factor ,Sulfuric Acid Esters ,Biology ,Ribosome ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,RNA polymerase ,Escherichia coli ,rRNA Operon ,Promoter Regions, Genetic ,030304 developmental biology ,Genetics ,0303 health sciences ,Base Sequence ,Biochemistry, Genetics and Molecular Biology(all) ,030306 microbiology ,Escherichia coli Proteins ,Promoter ,DNA-Directed RNA Polymerases ,Templates, Genetic ,Ribosomal RNA ,Footprinting ,Cell biology ,chemistry ,Mutation ,bacteria ,Indicators and Reagents ,RRNA Operon ,Protein Binding - Abstract
Regulation of transcription initiation is generally attributable to activator/repressor proteins that bind to specific DNA sequences. However, regulators can also achieve specificity by binding directly to RNA polymerase (RNAP) and exploiting the kinetic variation intrinsic to different RNAP-promoter complexes. We report here a previously unknown interaction with Escherichia coli RNAP that defines an additional recognition element in bacterial promoters. The strength of this sequence-specific interaction varies at different promoters and affects the lifetime of the complex with RNAP. Selection of rRNA promoter mutants forming long-lived complexes, kinetic analyses of duplex and bubble templates, dimethylsulfate footprinting, and zero-Angstrom crosslinking demonstrated that sigma subunit region 1.2 directly contacts the nontemplate strand base two positions downstream of the -10 element (within the "discriminator" region). By making a nonoptimal sigma1.2-discriminator interaction, rRNA promoters create the short-lived complex required for specific responses to the RNAP binding factors ppGpp and DksA, ultimately accounting for regulation of ribosome synthesis.
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