23 results on '"Marie-José H. van den Boogaard"'
Search Results
2. De novo variants in FBXO11 cause a syndromic form of intellectual disability with behavioral problems and dysmorphisms
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Paulien A Terhal, Rosa Pettinato, Jessica Jackson, Maria J. Guillen Sacoto, R. Frank Kooy, Rolph Pfundt, Grace E. VanNoy, Asbjørg Stray-Pedersen, Elizabeth Judd, Tuula Rinne, Rhonda E. Schnur, Marie José H. Van Den Boogaard, Jolien S. Klein Wassink-Ruiter, Paldeep S. Atwal, David A. Sweetser, Ilse J. Anderson, Jessica L. Waxler, Ilse M. van der Werf, Kristian Tveten, Alexander P.A. Stegmann, Petra de Vries, Alexandra Afenjar, Lisenka E.L.M. Vissers, Anke Van Dijck, Sonja A. de Munnik, Anthonie J. van Essen, Ivan Iossifov, Marcia C. Willing, Charu Kaiwar, Charlotte W. Ockeloen, Joris A. Veltman, Mieke M. van Haelst, Diane Doummar, Sandra Jansen, Marije Meuwissen, Eric W. Klee, Pankaj B. Agrawal, Ellen van Binsbergen, Bert B.A. de Vries, Victoria R. Sanders, A. Micheil Innes, Kristin G. Monaghan, Hilary Racher, Corrado Romano, Zeynep Coban-Akdemir, Albertien M. van Eerde, Eric J. Smeets, Caroline Nava, Lucia Castiglia, Boris Keren, Koen L.I. van Gassen, Human genetics, Amsterdam Neuroscience - Complex Trait Genetics, Amsterdam Reproduction & Development (AR&D), MUMC+: DA KG Polikliniek (9), MUMC+: DA KG Lab Centraal Lab (9), and RS: FHML non-thematic output
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Protein-Arginine N-Methyltransferases ,media_common.quotation_subject ,Nonsense ,Biology ,PHENOTYPE ,Article ,DNA sequencing ,Frameshift mutation ,GENEMATCHER ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,E3 ,Intellectual Disability ,Intellectual disability ,Genetics ,medicine ,Journal Article ,UBIQUITIN LIGASES ,Missense mutation ,Humans ,Abnormalities, Multiple ,Gene ,Genetics (clinical) ,media_common ,0303 health sciences ,Behavior ,SPECTRUM ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,IDENTIFICATION ,MUTATIONS ,F-Box Proteins ,030305 genetics & heredity ,Genetic Variation ,Syndrome ,medicine.disease ,GENE ,CANCER ,Hypotonia ,FAMILY ,Chemistry ,Autism spectrum disorder ,Human medicine ,medicine.symptom ,Abnormalities ,Multiple ,Gene Deletion ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] - Abstract
Determining pathogenicity of genomic variation identified by next-generation sequencing techniques can be supported by recurrent disruptive variants in the same gene in phenotypically similar individuals. However, interpretation of novel variants in a specific gene in individuals with mild-moderate intellectual disability (ID) without recognizable syndromic features can be challenging and reverse phenotyping is often required. We describe 24 individuals with a de novo disease-causing variant in, or partial deletion of, the F-box only protein 11 gene (FBXO11, also known as VIT1 and PRMT9). FBXO11 is part of the SCF (SKP1-cullin-F-box) complex, a multi-protein E3 ubiquitin-ligase complex catalyzing the ubiquitination of proteins destined for proteasomal degradation. Twenty-two variants were identified by next-generation sequencing, comprising 2 in-frame deletions, 11 missense variants, 1 canonical splice site variant, and 8 nonsense or frameshift variants leading to a truncated protein or degraded transcript. The remaining two variants were identified by array-comparative genomic hybridization and consisted of a partial deletion of FBXO11. All individuals had borderline to severe ID and behavioral problems (autism spectrum disorder, attention-deficit/hyperactivity disorder, anxiety, aggression) were observed in most of them. The most relevant common facial features included a thin upper lip and a broad prominent space between the paramedian peaks of the upper lip. Other features were hypotonia and hyperlaxity of the joints. We show that de novo variants in FBXO11 cause a syndromic form of ID. The current series show the power of reverse phenotyping in the interpretation of novel genetic variances in individuals who initially did not appear to have a clear recognizable phenotype.
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- 2019
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3. Deletions and loss-of-function variants in TP63 associated with orofacial clefting
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Kaare Christensen, Marie José H. Van Den Boogaard, Volker Dötsch, Ozan Topaloglu, Alexander Hoischen, Kriti D. Khandelwal, Jakob Gebel, Ellen van Beusekom, Nel Roeleveld, Elisabeth Mangold, Sarah L. Mehrem, Christian Gilissen, Joseph Schoenaers, Koen Devriendt, Greet Hens, Stefaan J. Bergé, Iris A.L.M. van Rooij, Jeffrey C. Murray, Hans van Bokhoven, Marloes Steehouwer, Carine Carels, Kerstin U. Ludwig, Ellen van Binsbergen, Nina Ishorst, Christina Fagerberg, and Huiqing Zhou
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Adult ,Male ,Cleft Lip ,Population ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Mutation, Missense ,Biology ,Article ,Healthcare improvement science Radboud Institute for Health Sciences [Radboudumc 18] ,Frameshift mutation ,Cohort Studies ,03 medical and health sciences ,Loss of Function Mutation ,TP63 ,Genetics ,Humans ,Missense mutation ,Genetics(clinical) ,Copy-number variation ,Allele ,education ,Alleles ,Genetics (clinical) ,Loss function ,Sequence Deletion ,0303 health sciences ,education.field_of_study ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Base Sequence ,Tumor Suppressor Proteins ,030305 genetics & heredity ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Middle Aged ,Penetrance ,Reconstructive and regenerative medicine Radboud Institute for Health Sciences [Radboudumc 10] ,Cleft Palate ,Reconstructive and regenerative medicine Radboud Institute for Molecular Life Sciences [Radboudumc 10] ,Amino Acid Substitution ,Female ,Molecular Developmental Biology ,Transcription Factors - Abstract
Contains fulltext : 204872.pdf (Publisher’s version ) (Open Access) We aimed to identify novel deletions and variants of TP63 associated with orofacial clefting (OFC). Copy number variants were assessed in three OFC families using microarray analysis. Subsequently, we analyzed TP63 in a cohort of 1072 individuals affected with OFC and 706 population-based controls using molecular inversion probes (MIPs). We identified partial deletions of TP63 in individuals from three families affected with OFC. In the OFC cohort, we identified several TP63 variants predicting to cause loss-of-function alleles, including a frameshift variant c.569_576del (p.(Ala190Aspfs*5)) and a nonsense variant c.997C>T (p.(Gln333*)) that introduces a premature stop codon in the DNA-binding domain. In addition, we identified the first missense variants in the oligomerization domain c.1213G>A (p.(Val405Met)), which occurred in individuals with OFC. This variant was shown to abrogate oligomerization of mutant p63 protein into oligomeric complexes, and therefore likely represents a loss-of-function allele rather than a dominant-negative. All of these variants were inherited from an unaffected parent, suggesting reduced penetrance of such loss-of-function alleles. Our data indicate that loss-of-function alleles in TP63 can also give rise to OFC as the main phenotype. We have uncovered the dosage-dependent functions of p63, which were previously rejected.
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- 2019
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4. Distinct effects on mRNA export factor GANP underlie neurological disease phenotypes and alter gene expression depending on intron content
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Monique M. Ryan, Roberto T. Zori, Diana Bharucha-Goebel, Matthew White, Carsten G. Bönnemann, Henry Houlden, Reza Maroofian, Jemeen Sreedharan, Karit Reinson, Noora Andersson, Mariëtte J.V. Hoffer, Monica H. Wojcik, Maie Walsh, Olli Carpén, Emilia K. Bijlsma, Marie-José H. van den Boogaard, Rosa Woldegebriel, Fang Zhao, Sara Winchester, Emil Ylikallio, Inge Cuppen, Zornitza Stark, Murray Stewart, Jouni Kvist, Henna Tyynismaa, Emer O'Connor, Sandra Donkervoort, Katrin Õunap, Centre of Excellence in Stem Cell Metabolism, STEMM - Stem Cells and Metabolism Research Program, Research Programs Unit, University of Helsinki, HUS Children and Adolescents, Department of Pathology, Helsinki University Hospital Area, Research Program in Systems Oncology, HUSLAB, Precision Cancer Pathology, Olli Mikael Carpen / Principal Investigator, Clinicum, HUS Neurocenter, Department of Neurosciences, Neurologian yksikkö, Department of Medical and Clinical Genetics, Staff Services, Henna Tyynismaa / Principal Investigator, Neuroscience Center, and Helsinki Institute of Life Science HiLIFE
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AcademicSubjects/SCI01140 ,Male ,PROMOTES ,Protein Conformation ,SAGA ,RNA Transport ,Transcriptome ,INITIATION ,0302 clinical medicine ,Transcription (biology) ,Gene expression ,TRANSCRIPTION ,Age of Onset ,Child ,Genetics (clinical) ,SAC3 ,Regulation of gene expression ,Genetics ,0303 health sciences ,TREX-2 COMPLEX ,1184 Genetics, developmental biology, physiology ,Intracellular Signaling Peptides and Proteins ,Nuclear Proteins ,Peripheral Nervous System Diseases ,General Medicine ,Phenotype ,Child, Preschool ,Antigens, Surface ,Female ,General Article ,MCM3AP ,Biology ,REGION ,03 medical and health sciences ,Acetyltransferases ,Intellectual Disability ,Humans ,RNA, Messenger ,Molecular Biology ,Transcription factor ,Gene ,030304 developmental biology ,Glycoproteins ,Cell Nucleus ,Flavoproteins ,Intron ,PATHWAYS ,Phosphoproteins ,Introns ,Phosphoric Monoester Hydrolases ,Exodeoxyribonucleases ,Gene Expression Regulation ,REPLICATION ,1182 Biochemistry, cell and molecular biology ,3111 Biomedicine ,Nervous System Diseases ,030217 neurology & neurosurgery ,Transcription Factors - Abstract
Defects in the mRNA export scaffold protein GANP, encoded by the MCM3AP gene, cause autosomal recessive early-onset peripheral neuropathy with or without intellectual disability. We extend here the phenotypic range associated with MCM3AP variants, by describing a severely hypotonic child and a sibling pair with a progressive encephalopathic syndrome. In addition, our analysis of skin fibroblasts from affected individuals from seven unrelated families indicates that disease variants result in depletion of GANP except when they alter critical residues in the Sac3 mRNA binding domain. GANP depletion was associated with more severe phenotypes compared with the Sac3 variants. Patient fibroblasts showed transcriptome alterations that suggested intron content-dependent regulation of gene expression. For example, all differentially expressed intronless genes were downregulated, including ATXN7L3B, which couples mRNA export to transcription activation by association with the TREX-2 and SAGA complexes. Our results provide insight into the molecular basis behind genotype-phenotype correlations in MCM3AP-associated disease and suggest mechanisms by which GANP defects might alter RNA metabolism.
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- 2020
5. HNRNPH1 ‐related syndromic intellectual disability: Seven additional cases suggestive of a distinct syndromic neurodevelopmental syndrome
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Julie Frank, Maria Iascone, Aurora Pujol, Richard H. van Jaarsveld, Laura Planas-Serra, Rachel Li, Marie-José H. van den Boogaard, Stéphane Fourcade, Raymond C. Lewandowski, Helen Stewart, Sylvia Maitz, Lucy Loong, Agustí Rodríguez-Palmero, Mireia del Toro, Agatha Schlüter, Sian Ellard, Elisa De Franco, Scott Turner, Sara Chadwick Reichert, and Maarten P.G. Massink
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0301 basic medicine ,Adult ,Male ,Pediatrics ,medicine.medical_specialty ,Microcephaly ,Adolescent ,People with mental disabilities ,030105 genetics & heredity ,Heterogeneous-Nuclear Ribonucleoproteins ,03 medical and health sciences ,Epilepsy ,Young Adult ,Genes, X-Linked ,Intellectual Disability ,Intellectual disability ,Genetics ,medicine ,Humans ,Dysmorphic facial features ,Child ,Genetics (clinical) ,Exome sequencing ,business.industry ,Genitourinary system ,Incidence (epidemiology) ,Infant, Newborn ,Infant ,Syndrome ,medicine.disease ,030104 developmental biology ,Phenotype ,Neurodevelopmental Disorders ,Child, Preschool ,Discapacitats mentals ,Cardiac defects ,Female ,Malformacions ,business ,Human abnormalities - Abstract
Pathogenic variants in HNRNPH1 were first reported in 2018. The reported individual, a 13 year old boy with a c.616C>T (p.R206W) variant in the HNRNPH1 gene, was noted to have overlapping symptoms with those observed in HNRNPH2-related X-linked intellectual disability, Bain type (MRXSB), specifically intellectual disability and dysmorphic features. While HNRNPH1 variants were initially proposed to represent an autosomal cause of MRXSB, we report an additional seven cases which identify phenotypic differences from MRXSB. Patients with HNRNPH1 pathogenic variants diagnosed via WES were identified using clinical networks and GeneMatcher. Features unique to individuals with HNRNPH1 variants include distinctive dysmorphic facial features; an increased incidence of congenital anomalies including cranial and brain abnormalities, genitourinary malformations, and palate abnormalities; increased incidence of ophthalmologic abnormalities; and a decreased incidence of epilepsy and cardiac defects compared to those with MRXSB. This suggests that pathogenic variants in HNRNPH1 result in a related, but distinct syndromic cause of intellectual disability from MRXSB, which we refer to as HNRNPH1-related syndromic intellectual disability.
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- 2020
6. De novo variants in SNAP25 cause an early-onset developmental and epileptic encephalopathy
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Marwan Shinawi, Jessica Van Ziffle, Carsten G. Bönnemann, Mohamad A. Mikati, Vandana Shashi, Konrad Platzer, Manju A. Kurian, Katy Barwick, Kathleen A. Leppig, Patrick Devine, F. Lucy Raymond, Tomi L. Toler, Johan Lundgren, Koen L.I. van Gassen, Anne Slavotinek, Saskia N. van der Crabben, Wendy K. Chung, Richard H. van Jaarsveld, Matias Wagner, Rikke S. Møller, Marie T. McDonald, Pia Zacher, Kristen Wigby, Heather C Mefford, Dewi P. Bakker, Jennifer Friedman, Angus John Clarke, Joseph T. Shieh, Holly E. Babcock, Julian R. Sampson, Amy McTague, Jamal Ghoumid, Bernt Popp, Saskia B. Wortmann, Emma Hobson, Michaela Bonfert, Gabriella Horvath, Chiara Klöckner, Virgina Lee, Cyril Mignot, Yuri A. Zarate, Jennifer A. Sullivan, Marie-José H. van den Boogaard, Johannes R. Lemke, Alba Sanchis-Juan, Tommy Stödberg, Heinrich Sticht, Eva H. Brilstra, Alyssa Gates, Caroline Nava, Nicholas Stong, Sandra Donkervoort, Alexandrea Wadley, Boris Keren, Jamie L. Fraser, Ashley C. Taylor, Jennifer Keller-Ramey, Human Genetics, Pediatric surgery, Amsterdam Neuroscience - Neuroinfection & -inflammation, and Human genetics
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medicine.medical_specialty ,Movement disorders ,Synaptosomal-Associated Protein 25 ,Bioinformatics ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Atrophy ,Intellectual Disability ,Intellectual disability ,Medicine ,STXBP1 ,Missense mutation ,Humans ,Genetics (clinical) ,030304 developmental biology ,0303 health sciences ,Brain Diseases ,business.industry ,STX1B ,medicine.disease ,Phenotype ,Neurodevelopmental Disorders ,Child, Preschool ,Medical genetics ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
Purpose\ud This study aims to provide a comprehensive description of the phenotypic and genotypic spectrum of SNAP25 developmental and epileptic encephalopathy (SNAP25-DEE) by reviewing newly identified and previously reported individuals.\ud \ud Methods\ud Individuals harboring heterozygous missense or loss-of-function variants in SNAP25 were assembled through collaboration with international colleagues, matchmaking platforms, and literature review. For each individual, detailed phenotyping, classification, and structural modeling of the identified variant were performed.\ud \ud Results\ud The cohort comprises 23 individuals with pathogenic or likely pathogenic de novo variants in SNAP25. Intellectual disability and early-onset epilepsy were identified as the core symptoms of SNAP25-DEE, with recurrent findings of movement disorders, cerebral visual impairment, and brain atrophy. Structural modeling for all variants predicted possible functional defects concerning SNAP25 or impaired interaction with other components of the SNARE complex.\ud \ud Conclusion\ud We provide a comprehensive description of SNAP25-DEE with intellectual disability and early-onset epilepsy mostly occurring before the age of two years. These core symptoms and additional recurrent phenotypes show an overlap to genes encoding other components or associated proteins of the SNARE complex such as STX1B, STXBP1, or VAMP2. Thus, these findings advance the concept of a group of neurodevelopmental disorders that may be termed “SNAREopathies.”
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- 2020
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7. De Novo Variants in SPOP Cause Two Clinically Distinct Neurodevelopmental Disorders
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Hanka Venselaar, Jennifer Keller-Ramey, Arjan P.M. de Brouwer, Tiziano Bernasocchi, Amber Begtrup, Michael Parker, Margot I. Van Allen, Koen L.I. van Gassen, Christian Gilissen, Maria J. Nabais Sá, Lisenka E.L.M. Vissers, Ellen R. Elias, Daniela del Gaudio, Sarah L. Sawyer, Bert B.A. de Vries, Farah Kanani, Jean-Philippe Theurillat, Klaas J. Wierenga, Marie-José H. van den Boogaard, Gabriela Purcarin, Rolph Pfundt, Laurens Wiel, and Geniver El Tekle
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Male ,Microcephaly ,Adolescent ,Mutation, Missense ,SPOP ,Biology ,03 medical and health sciences ,Young Adult ,All institutes and research themes of the Radboud University Medical Center ,0302 clinical medicine ,Germline mutation ,Neurodevelopmental disorder ,Report ,Intellectual Disability ,Genetics ,medicine ,Missense mutation ,Humans ,Hypertelorism ,Child ,Genetics (clinical) ,Exome sequencing ,030304 developmental biology ,0303 health sciences ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Skull ,Macrocephaly ,Facies ,Infant ,Nuclear Proteins ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,medicine.disease ,Repressor Proteins ,Neurodevelopmental Disorders ,Child, Preschool ,Female ,medicine.symptom ,Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19] ,030217 neurology & neurosurgery - Abstract
Recurrent somatic variants in SPOP are cancer specific; endometrial and prostate cancers result from gain-of-function and dominant-negative effects toward BET proteins, respectively. By using clinical exome sequencing, we identified six de novo pathogenic missense variants in SPOP in seven individuals with developmental delay and/or intellectual disability, facial dysmorphisms, and congenital anomalies. Two individuals shared craniofacial dysmorphisms, including congenital microcephaly, that were strikingly different from those of the other five individuals, who had (relative) macrocephaly and hypertelorism. We measured the effect of SPOP variants on BET protein amounts in human Ishikawa endometrial cancer cells and patient-derived cell lines because we hypothesized that variants would lead to functional divergent effects on BET proteins. The de novo variants c.362G>A (p.Arg121Gln) and c. 430G>A (p.Asp144Asn), identified in the first two individuals, resulted in a gain of function, and conversely, the c.73A>G (p.Thr25Ala), c.248A>G (p.Tyr83Cys), c.395G>T (p.Gly132Val), and c.412C>T (p.Arg138Cys) variants resulted in a dominant-negative effect. Our findings suggest that these opposite functional effects caused by the variants in SPOP result in two distinct and clinically recognizable syndromic forms of intellectual disability with contrasting craniofacial dysmorphisms.
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- 2020
8. The diagnostic yield of whole-exome sequencing targeting a gene panel for hearing impairment in The Netherlands
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Ilse Feenstra, Marieke F. van Dooren, Marie José H. Van Den Boogaard, Rolph Pfundt, Stefan H. Lelieveld, Celia Zazo Seco, Henricus P. M. Kunst, Ilse J. de Wijs, Christian Gilissen, Saskia M. Maas, Arjan C. Houweling, Saskia Tamminga, Astrid S Plomp, Steven Castelein, Helger G. Yntema, Margit Schraders, Els K. Vanhoutte, Ronald J.C. Admiraal, Sarina G. Kant, Suzanna G.M. Frints, Hans Scheffer, Christa M. De Geus, Pia A. M. de Koning Gans, Jiddeke M. van de Kamp, Jayne Y. Hehir-Kwa, Ronald J.E. Pennings, Mieke Wesdorp, Hannie Kremer, Marcel R. Nelen, Lies H. Hoefsloot, Human genetics, AGEM - Endocrinology, metabolism and nutrition, AGEM - Inborn errors of metabolism, Amsterdam Neuroscience - Complex Trait Genetics, APH - Quality of Care, ACS - Atherosclerosis & ischemic syndromes, Clinical Genetics, MUMC+: DA KG Bedrijfsbureau (9), RS: GROW - R4 - Reproductive and Perinatal Medicine, Klinische Genetica, MUMC+: DA KG Polikliniek (9), Human Genetics, and Paediatric Genetics
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0301 basic medicine ,MYO15A ,030105 genetics & heredity ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Connexins ,Exome ,Copy-number variation ,MUTATION ,Genetics (clinical) ,Exome sequencing ,Netherlands ,Genetics ,COPY NUMBER VARIANTS ,Extracellular Matrix Proteins ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,EAR ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Connexin 26 ,Intercellular Signaling Peptides and Proteins ,Neurodevelopmental disorders Radboud Institute for Molecular Life Sciences [Radboudumc 7] ,DEAFNESS ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] ,STRC ,medicine.medical_specialty ,DNA Copy Number Variations ,OTOGELIN ,Genetic counseling ,Biology ,Myosins ,GPI-Linked Proteins ,FREQUENCY ,Article ,03 medical and health sciences ,Molecular genetics ,Journal Article ,medicine ,Humans ,Genetic Testing ,Sensory disorders Radboud Institute for Molecular Life Sciences [Radboudumc 12] ,Hearing Loss ,SPECTRUM ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Myosin Heavy Chains ,IDENTIFICATION ,Genetic heterogeneity ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,Membrane Proteins ,Sequence Analysis, DNA ,030104 developmental biology - Abstract
Contains fulltext : 169850.pdf (Publisher’s version ) (Closed access) Hearing impairment (HI) is genetically heterogeneous which hampers genetic counseling and molecular diagnosis. Testing of several single HI-related genes is laborious and expensive. In this study, we evaluate the diagnostic utility of whole-exome sequencing (WES) targeting a panel of HI-related genes. Two hundred index patients, mostly of Dutch origin, with presumed hereditary HI underwent WES followed by targeted analysis of an HI gene panel of 120 genes. We found causative variants underlying the HI in 67 of 200 patients (33.5%). Eight of these patients have a large homozygous deletion involving STRC, OTOA or USH2A, which could only be identified by copy number variation detection. Variants of uncertain significance were found in 10 patients (5.0%). In the remaining 123 cases, no potentially causative variants were detected (61.5%). In our patient cohort, causative variants in GJB2, USH2A, MYO15A and STRC, and in MYO6 were the leading causes for autosomal recessive and dominant HI, respectively. Segregation analysis and functional analyses of variants of uncertain significance will probably further increase the diagnostic yield of WES.
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- 2017
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9. Polyhydramnios in isolated oral cleft pregnancies: incidence and outcome in a retrospective study
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Saskia M. Maas, Chantal M.A.M. van der Horst, Roel de Heus, Mireille N. Bekker, Marie-José H. van den Boogaard, Anne L. Depla, Eva Pajkrt, and Corstiaan C. Breugem
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Gynecology ,Pregnancy ,medicine.medical_specialty ,Polyhydramnios ,030219 obstetrics & reproductive medicine ,Amniotic fluid ,business.industry ,Obstetrics ,Incidence (epidemiology) ,Obstetrics and Gynecology ,Retrospective cohort study ,Subgroup analysis ,030206 dentistry ,Odds ratio ,medicine.disease ,Confidence interval ,03 medical and health sciences ,0302 clinical medicine ,medicine ,business ,Genetics (clinical) - Abstract
Objectives Polyhydramnios is suggested to be associated with oral clefts (OCs) due to swallowing problems. This study assessed incidence and outcome of idiopathic polyhydramnios in isolated OC pregnancies. Methods This was a retrospective cohort study of prenatally diagnosed OC. The incidence of idiopathic polyhydramnios in isolated OC pregnancies was determined. Pregnancy outcome, neonatal and paediatric follow-up were compared between cases with polyhydramnios and those with normal amniotic fluid. Subgroup analysis was conducted to evaluate whether an association exists between polyhydramnios and presence of associated anomalies diagnosed after birth. Results In 230 cases of isolated OC, 15 developed polyhydramnios (6.5%). Involvement of the palate was significantly more common in the presence than in the absence of polyhydramnios (13/15 or 87% vs 125/215 or 58%, p = 0.03, odds ratio 4.7, 95% confidence interval 1.0-30.8). No significant differences were seen in pregnancy outcome or neonatal and paediatric follow-up between the two groups. In subgroup analysis, rate of polyhydramnios was not significantly different in associated cases that appeared isolated prenatally (1/27; 3.7%) compared with that in the isolated cases (15/230; 6.5%). Conclusions The incidence of idiopathic polyhydramnios in isolated OC pregnancies is 6.5%. Polyhydramnios in isolated OC increases the risk of palate involvement. The presence of polyhydramnios is not associated with adverse perinatal or long-term outcome. If isolated at prenatal assessment, polyhydramnios does not increase the risk of associated anomalies postpartum. © 2016 John Wiley & Sons, Ltd.
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- 2017
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10. Concurrent manifestation of oligodontia and thrombocytopenia caused by a contiguous gene deletion in 12p13.2 : A three-generation clinical report
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Marijn Créton, Jamila Ross, Nicole de Leeuw, Marie José H. Van Den Boogaard, Hans Kristian Ploos van Amstel, Annemieke Willemze, Antoine J.W.P. Rosenberg, Marco S. Cune, Willem M.M. Fennis, and Personalized Healthcare Technology (PHT)
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Adult ,Male ,0301 basic medicine ,LRP6 ,lcsh:QH426-470 ,Cell Cycle Proteins ,thrombocytopenia ,Oligodontia ,030105 genetics & heredity ,Biology ,Genome ,Angiopoietin-2 ,03 medical and health sciences ,Genetics ,Journal Article ,Humans ,Medical history ,Genetics(clinical) ,oligodontia ,Child ,Gene ,Molecular Biology ,Genetics (clinical) ,Chromosome 12 ,Anodontia ,Chromosomes, Human, Pair 12 ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Proto-Oncogene Proteins c-ets ,Wnt signaling pathway ,Original Articles ,Syndrome ,ETV6 ,Pedigree ,Repressor Proteins ,lcsh:Genetics ,Cytoskeletal Proteins ,Phenotype ,030104 developmental biology ,Proto-Oncogene Proteins c-bcl-2 ,Low Density Lipoprotein Receptor-Related Protein-6 ,Original Article ,Female ,contiguous gene deletion ,Gene Deletion ,Chromosomes, Human, Pair 8 - Abstract
Contains fulltext : 206417.pdf (Publisher’s version ) (Open Access) BACKGROUND: Wnt and Wnt-associated pathways play an important role in the genetic etiology of oligodontia, a severe form of tooth agenesis. Loss-of-function mutations in LRP6 , encoding a transmembrane cell-surface protein that functions as a coreceptor in the canonical Wnt/b-catenin signaling cascade, also contribute to genetic oligodontia. METHODS AND RESULTS: We describe a three-generation family with hereditary thrombocytopenia and oligodontia. Genome wide array analysis was performed. The array results from the index patient revealed an interstitial loss of 150 kb in 8p23.1 (chr8:6,270,299-6,422,558; hg19) encompassing MCPH1 and ANGPT2 and an interstitial loss of 290 kb in 12p13.2 (chr12:12,005,720-12,295,290; hg19) encompassing ETV6, BCL2L14 and LRP6. CONCLUSION: This case report shows a three-generation family with hereditary thrombocytopenia and oligodontia with a heterozygous 290 kb novel contiguous gene deletion in band p13.2 of chromosome 12, encompassing LRP6 and ETV6. In this report we discuss the clinical relevance of the deletion of both genes and illustrate the importance of thorough examination of oligodontia patients. Comprising not only the oral status but also the medical history of the patients and their relatives.
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- 2019
11. Correction to: De novo variants in SNAP25 cause an early-onset developmental and epileptic encephalopathy
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Marwan Shinawi, Johan Lundgren, Jennifer A. Sullivan, Katy Barwick, Jessica Van Ziffle, Eva H. Brilstra, Tomi L. Toler, Alyssa Gates, Carsten G. Bönnemann, Amy McTague, Dewi P. Bakker, Manju A. Kurian, Saskia N. van der Crabben, Jamal Ghoumid, Ashley C. Taylor, F. Lucy Raymond, Yuri A. Zarate, Patrick Devine, Pia Zacher, Heather C Mefford, Marie T. McDonald, Konrad Platzer, Emma Hobson, Holly E. Babcock, Jennifer Keller-Ramey, Gabriella Horvath, Anne Slavotinek, Caroline Nava, Koen L.I. van Gassen, Richard H. van Jaarsveld, Chiara Klöckner, Virgina Lee, Cyril Mignot, Jamie L. Fraser, Angus John Clarke, Nicholas Stong, Bernt Popp, Wendy K. Chung, Jennifer Friedman, Johannes R. Lemke, Alexandrea Wadley, Julian R. Sampson, Rikke S. Møller, Tommy Stödberg, Michaela Bonfert, Mohamad A. Mikati, Kathleen A. Leppig, Sandra Donkervoort, Vandana Shashi, Boris Keren, Heather M. McLaughlin, Matias Wagner, Kristen Wigby, Marie-José H. van den Boogaard, Alba Sanchis-Juan, Heinrich Sticht, Joseph T. Shieh, and Saskia B. Wortmann
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Text mining ,business.industry ,Epileptic encephalopathy ,MEDLINE ,SNAP25 ,Medicine ,business ,Bioinformatics ,Genetics (clinical) ,Early onset - Published
- 2021
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12. The association between WNT10A variants and dental development in patients with isolated oligodontia
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W.M.M. Fennis, Marijn Créton, Eppo B. Wolvius, Edwin M. Ongkosuwito, Marie-José H. van den Boogaard, Brunilda Dhamo, Hans Kristian Ploos van Amstel, Strahinja Vucic, Marco S. Cune, Erasmus MC other, Oral and Maxillofacial Surgery, and Personalized Healthcare Technology (PHT)
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ECTODERMAL DYSPLASIA ,ANOMALIES ,Male ,0301 basic medicine ,Ectodermal dysplasia ,GENES ,Adolescent ,ISOLATED HYPODONTIA ,medicine.medical_treatment ,Maxillary second molar ,Population ,ONYCHO-DERMAL DYSPLASIA ,Dentistry ,Oligodontia ,MATURATION ,Article ,Crown (dentistry) ,Mandibular second molar ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,HUMAN TOOTH AGENESIS ,Journal Article ,Genetics ,medicine ,Humans ,Child ,education ,POPULATION ,Genetics (clinical) ,Anodontia ,education.field_of_study ,MUTATIONS ,business.industry ,Maxillary canine ,030206 dentistry ,medicine.disease ,Confidence interval ,Reconstructive and regenerative medicine Radboud Institute for Health Sciences [Radboudumc 10] ,Wnt Proteins ,stomatognathic diseases ,Phenotype ,030104 developmental biology ,Codon, Nonsense ,Mutation ,Female ,business ,Tooth ,MISSING TEETH - Abstract
In this study we aimed to determine the effect of WNT10A variants on dental development in patients with oligodontia. Forty-three (25 boys and 18 girls) individuals were eligible for this study. Stage of development for each present tooth was assessed using the Demirjian method. In case no corresponding tooth was present, regression equations were applied for dental age to be calculated. The ratio between length of root and length of crown was ascertained for each present tooth in all quadrants. All patients were physically examined by a clinical geneticist and DNA analysis of the WNT10A gene was performed. Linear regression models were applied to analyze the association between WNT10A variants and dental age. The same analysis was applied to study the association between WNT10A variants and root elongation for each present tooth. One ordinal regression model was applied to analyze the association between WNT10A variants and development of present maxillary and mandibular teeth. Thirty-six (84%) patients were detected with WNT10A variants of which six patients displayed evident ectodermal features. Dental age was 1.50 (95% confidence interval (CI): -2.59, -0.42) to 1.96 (95% CI: -3.76, -0.17) years lower in patients with WNT10A variants compared with patients without variants. The development of maxillary canine, maxillary second molar and mandibular second molar was statistically significantly delayed in patients with WNT10A variants compared with patients without variants. The impact of WNT10A variants on dental development increases with presence of the nonsense c.(321C>A p.(C107*)) variant and the number of missing teeth.European Journal of Human Genetics advance online publication, 21 September 2016; doi:10.1038/ejhg.2016.117.
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- 2016
13. Variants in members of the cadherin–catenin complex, CDH1 and CTNND1, cause blepharocheilodontic syndrome
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Victor Martinez-Glez, Vera Lúcia Gil da Silva Lopes, Federico Tessadori, Sheela Nampoothiri, Connie S. Motter, Marie-José H. van den Boogaard, Patrick W. B. Derksen, Catherine Ward Melver, Madelon M. Maurice, Corstiaan C. Breugem, Hülya Kayserili, Max Krall, Leontine van Unen, Fernando Santos-Simarro, Annelies de Klein, Jeroen Bakkers, Pablo Lapunzina, Elaine Lustosa-Mendes, Anneke Kievit, Margo L. Whiteford, Anne Slavotinek, Hannie Douben, Michael L. Cunningham, Nancy Mizue Kokitsu-Nakata, Wilfred F. J. van IJcken, Koen L.I. van Gassen, Gijs van Haaften, Anne V. Hing, Annette F. Baas, Antonio Richieri-Costa, Maarten P.G. Massink, Raoul C.M. Hennekam, Karen Duran, Siulan Vendramini-Pittoli, Jeannette Hoogeboom, Marco Castori, Ingrid Jordens, Clinical Genetics, APH - Quality of Care, Paediatric Genetics, ARD - Amsterdam Reproduction and Development, and Hubrecht Institute for Developmental Biology and Stem Cell Research
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0301 basic medicine ,Male ,Delta Catenin ,Ectropion ,030105 genetics & heredity ,medicine.disease_cause ,CDH1 ,Ectropion/genetics ,Child ,Genetics (clinical) ,Zebrafish ,Mutation ,CTNND1 ,Cleft Lip/genetics ,Antigens, CD/genetics ,Catenins ,Cadherins ,Cleft Palate ,CD/genetics ,Child, Preschool ,MCF-7 Cells ,Female ,Catenin complex ,Hereditary diffuse gastric cancer ,Protein Binding ,Adult ,ANORMALIDADES CRANIOFACIAIS ,Adolescent ,Cleft Lip ,Catenins/genetics ,Biology ,Article ,03 medical and health sciences ,Antigens, CD ,Cleft Palate/genetics ,Tooth Abnormalities/genetics ,Genetics ,medicine ,Cell Adhesion ,Animals ,Humans ,Antigens ,Preschool ,Gene ,Cadherin ,Tooth Abnormalities ,Cadherins/genetics ,medicine.disease ,Blepharocheilodontic syndrome ,030104 developmental biology ,Cancer research ,biology.protein - Abstract
Blepharocheilodontic syndrome (BCDS) consists of lagophthalmia, ectropion of the lower eyelids, distichiasis, euryblepharon, cleft lip/palate and dental anomalies and has autosomal dominant inheritance with variable expression. We identified heterozygous variants in two genes of the cadherin-catenin complex, CDH1, encoding E-cadherin, and CTNND1, encoding p120 catenin delta1 in 15 of 17 BCDS index patients, as was recently described in a different publication. CDH1 plays an essential role in epithelial cell adherence; CTNND1 binds to CDH1 and controls the stability of the complex. Functional experiments in zebrafish and human cells showed that the CDH1 variants impair the cell adhesion function of the cadherin-catenin complex in a dominant-negative manner. Variants in CDH1 have been linked to familial hereditary diffuse gastric cancer and invasive lobular breast cancer; however, no cases of gastric or breast cancer have been reported in our BCDS cases. Functional experiments reported here indicated the BCDS variants comprise a distinct class of CDH1 variants. Altogether, we identified the genetic cause of BCDS enabling DNA diagnostics and counseling, in addition we describe a novel class of dominant negative CDH1 variants.
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- 2018
14. De novo mutations in beta-catenin (CTNNB1) appear to be a frequent cause of intellectual disability: expanding the mutational and clinical spectrum
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Hans van Bokhoven, Sonja A. de Munnik, Eric Smeets, Weimin He, André Reis, Marie José H. Van Den Boogaard, David A. Koolen, Willemijn Wissink, Marjolein H. Willemsen, Mieke M. van Haelst, Peter M. van Hasselt, Koen L.I. van Gassen, Joris A. Veltman, Glen R. Monroe, Elisabeth Graf, David Tegay, Hartmut Engels, Tim M. Strom, Jacob Hogue, Gepke Visser, Hermann-Josef Lüdecke, Marlies Kempers, Christian Büttner, Nuria C. Bramswig, Beate Albrecht, Kirsten Cremer, Helger G. Yntema, Dagmar Wieczorek, Miriam S. Reuter, Johanna Christina Czeschik, Thomas Wieland, Matthew Pastore, Carlos A. Bacino, Dennis Bartholomew, Alexander M. Zink, Alma Kuechler, Tjitske Kleefstra, Lisenka E.L.M. Vissers, Human genetics, Amsterdam Neuroscience - Complex Trait Genetics, Amsterdam Reproduction & Development (AR&D), Pulmonary medicine, Other departments, MUMC+: DA KG Polikliniek (9), Groei & Ontwikkeling, Genetica & Celbiologie, and RS: FHML non-thematic output
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Male ,Microcephaly ,SEQUENCING DATA ,Medizin ,Other Research Donders Center for Medical Neuroscience [Radboudumc 0] ,Haploinsufficiency ,Biology ,Research Support ,medicine.disease_cause ,Bioinformatics ,Germline ,Frameshift mutation ,Intellectual Disability ,Journal Article ,Genetics ,medicine ,Humans ,Missense mutation ,Genetics(clinical) ,Child ,Non-U.S. Gov't ,beta Catenin ,Genetics (clinical) ,Mutation ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Research Support, Non-U.S. Gov't ,Infant ,Syndrome ,medicine.disease ,Phenotype ,MICE ,Child, Preschool ,Hypertonia ,Female ,medicine.symptom ,Follow-Up Studies ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] - Abstract
Contains fulltext : 154935.pdf (Publisher’s version ) (Closed access) Recently, de novo heterozygous loss-of-function mutations in beta-catenin (CTNNB1) were described for the first time in four individuals with intellectual disability (ID), microcephaly, limited speech and (progressive) spasticity, and functional consequences of CTNNB1 deficiency were characterized in a mouse model. Beta-catenin is a key downstream component of the canonical Wnt signaling pathway. Somatic gain-of-function mutations have already been found in various tumor types, whereas germline loss-of-function mutations in animal models have been shown to influence neuronal development and maturation. We report on 16 additional individuals from 15 families in whom we newly identified de novo loss-of-function CTNNB1 mutations (six nonsense, five frameshift, one missense, two splice mutation, and one whole gene deletion). All patients have ID, motor delay and speech impairment (both mostly severe) and abnormal muscle tone (truncal hypotonia and distal hypertonia/spasticity). The craniofacial phenotype comprised microcephaly (typically -2 to -4 SD) in 12 of 16 and some overlapping facial features in all individuals (broad nasal tip, small alae nasi, long and/or flat philtrum, thin upper lip vermillion). With this detailed phenotypic characterization of 16 additional individuals, we expand and further establish the clinical and mutational spectrum of inactivating CTNNB1 mutations and thereby clinically delineate this new CTNNB1 haploinsufficiency syndrome. 9 p.
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- 2014
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15. Compound heterozygous NEK1 variants in two siblings with oral-facial-digital syndrome type II (Mohr syndrome)
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Glen R. Monroe, Gijs van Haaften, Robert J.J. van Es, Aebele B. Mink van der Molen, Nine V A M Knoers, Marijn Stokman, Rutger C.C. Hengeveld, Marie-José H. van den Boogaard, Rachel H. Giles, Sanne M C Savelberg, Nard G Janssen, Lars T. van der Veken, Michelle B. Ebbeling, Susanne M.A. Lens, Isabelle F. P. M. Kappen, Marijn Créton, and Paulien A Terhal
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0301 basic medicine ,Male ,Candidate gene ,medicine.medical_specialty ,NIMA-Related Kinase 1/genetics ,Heterozygote ,Cells ,Biology ,Compound heterozygosity ,Article ,03 medical and health sciences ,symbols.namesake ,medicine ,Genetics ,Journal Article ,Orofaciodigital Syndromes/genetics ,Humans ,Exome ,Genetics(clinical) ,Cilia ,Codon ,Child ,Cilia/pathology ,Genetics (clinical) ,Cells, Cultured ,Sanger sequencing ,Fibroblasts/metabolism ,Cultured ,Siblings ,Alternative splicing ,Cytogenetics ,Infant ,Fibroblasts ,Orofaciodigital Syndromes ,Molecular biology ,Alternative Splicing ,030104 developmental biology ,NIMA-Related Kinase 1 ,Nonsense ,Codon, Nonsense ,RNA splicing ,symbols ,Medical genetics - Abstract
The oral-facial-digital (OFD) syndromes comprise a group of related disorders with a combination of oral, facial and digital anomalies. Variants in several ciliary genes have been associated with subtypes of OFD syndrome, yet in most OFD patients the underlying cause remains unknown. We investigated the molecular basis of disease in two brothers with OFD type II, Mohr syndrome, by performing single-nucleotide polymorphism (SNP)-array analysis on the brothers and their healthy parents to identify homozygous regions and candidate genes. Subsequently, we performed whole-exome sequencing (WES) on the family. Using WES, we identified compound heterozygous variants c.[464G>C];[1226G>A] in NIMA (Never in Mitosis Gene A)-Related Kinase 1 (NEK1). The novel variant c.464G>C disturbs normal splicing in an essential region of the kinase domain. The nonsense variant c.1226G>A, p.(Trp409*), results in nonsense-associated alternative splicing, removing the first coiled-coil domain of NEK1. Candidate variants were confirmed with Sanger sequencing and alternative splicing assessed with cDNA analysis. Immunocytochemistry was used to assess cilia number and length. Patient-derived fibroblasts showed severely reduced ciliation compared with control fibroblasts (18.0 vs 48.9%, P
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- 2016
16. Mutations in WNT10A are present in more than half of isolated hypodontia cases
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Marie-José H. van den Boogaard, Hans Kristian Ploos van Amstel, Yvon Bronkhorst, Dick Lindhout, Marco S. Cune, Eric A. M. Hennekam, Annemieke van der Hout, Marijn Créton, and Personalized Healthcare Technology (PHT)
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Adult ,Male ,ECTODERMAL DYSPLASIA ,Ectodermal dysplasia ,Candidate gene ,SYMPTOMS ,Adolescent ,DNA Mutational Analysis ,GENETIC-BASIS ,ONYCHO-DERMAL DYSPLASIA ,FUNGIFORM PAPILLAE ,INHERITED ANOMALIES ,Biology ,TEETH ,Axin Protein ,stomatognathic system ,OLIGODONTIA ,Genetics ,medicine ,AXIN2 ,Humans ,Child ,Genetics (clinical) ,Anodontia ,MSX1 Transcription Factor ,EDARADD ,TOOTH AGENESIS ,Middle Aged ,medicine.disease ,Wnt Proteins ,Hypodontia ,stomatognathic diseases ,Phenotype ,Agenesis ,Mutation ,PATTERNS ,IRF6 ,Female ,PAX9 Transcription Factor ,PAX9 - Abstract
Background Dental agenesis is the most common, often heritable, developmental anomaly in humans. Mutations in MSX1, PAX9, AXIN2 and the ectodermal dysplasia genes EDA, EDAR and EDARADD have been detected in familial severe tooth agenesis. However, until recently, in the majority of cases (similar to 90%) the genetic factor could not be identified, implying that other genes must be involved. Recent insights into the role of Wnt10A in tooth development, and the finding of hypodontia in carriers of the autosomal recessive disorder, odontooncychodermal dysplasia, due to mutations in WNT10A (OMIM 257980; OODD), make WNT10A an interesting candidate gene for dental agenesis.Methods In a panel of 34 patients with isolated hypodontia, the candidate gene WNT10A and the genes MSX1, PAX9, IRF6 and AXIN2 have been sequenced. The probands all had isolated agenesis of between six and 28 teeth.Results WNT10A mutations were identified in 56% of the cases with non-syndromic hypodontia. MSX1, PAX9 and AXIN2 mutations were present in 3%, 9% and 3% of the cases, respectively.Conclusion The authors identified WNT10A as a major gene in the aetiology of isolated hypodontia. By including WNT10A in the DNA diagnostics of isolated tooth agenesis, the yield of molecular testing in this condition was significantly increased from 15% to 71%.
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- 2012
17. A systematic review of associated structural and chromosomal defects in oral clefts: when is prenatal genetic analysis indicated?
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Anna M. Rozendaal, Marie-José H. van den Boogaard, Eva Pajkrt, Aebele B. Mink van der Molen, Christl Vermeij-Keers, Wies Maarse, and Plastic and Reconstructive Surgery and Hand Surgery
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medicine.medical_specialty ,Chromosomes, Human, Pair 22 ,Cleft Lip ,Prevalence ,Genetic Counseling ,Genetic analysis ,Infant, Newborn, Diseases ,Ultrasonography, Prenatal ,Pregnancy ,Databases, Genetic ,Genetics ,Humans ,Medicine ,Genetic Predisposition to Disease ,Genetic Testing ,Genetic Association Studies ,Genetics (clinical) ,Genetic testing ,Oral cleft ,medicine.diagnostic_test ,business.industry ,Obstetrics ,Infant, Newborn ,medicine.disease ,Cleft Palate ,Prenatal screening ,Postnatal data ,Female ,Chromosome Deletion ,Ultrasonography ,business - Abstract
Background Oral clefts—comprising cleft lip (CL), cleft lip with cleft palate (CLP), and cleft palate (CP)—are being diagnosed prenatally more frequently. Consequently, the need for accurate information on the risk of associated anomalies and chromosomal defects to aid in prenatal counselling is rising. This systematic review was conducted to investigate the prenatal and postnatal prevalence of associated anomalies and chromosomal defects related to cleft category, thereby providing a basis for prenatal counselling and prenatal invasive diagnostics. Methods Online databases were searched for prenatal and postnatal studies on associated anomalies and chromosomal defects in clefts. Data from the literature were complemented with national validated data from the Dutch Oral Cleft Registry. Results Twenty studies were included: three providing prenatal data, 13 providing postnatal data, and four providing both. Data from prenatal and postnatal studies showed that the prevalence of associated anomalies was lowest in CL (0–20.0% and 7.6–41.4%, respectively). For CLP, higher frequencies were found both prenatally (39.1–66.0%) and postnatally (21.1–61.2%). Although CP was barely detectable by ultrasound, it was the category most frequently associated with accompanying defects in postnatal studies (22.2–78.3%). Chromosomal abnormalities were most frequently seen in association with additional anomalies. In the absence of associated anomalies, chromosomal defects were found prenatally in CLP (3.9%) and postnatally in CL (1.8%, 22q11.2 deletions only), CLP (1.0%) and CP (1.6%). Conclusions Prenatal counselling regarding prognosis and risk of chromosomal defects should be tailored to cleft category, and more importantly to the presence/absence of associated anomalies. Irrespective of cleft category, clinicians should advise invasive genetic testing if associated anomalies are seen prenatally. In the absence of associated anomalies, prenatal conventional karyotyping is not recommended in CL, although array comparative genomic hybridisation should be considered. In presumed isolated CLP or CP, prenatal invasive testing, preferably by array based methods, is recommended.
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- 2012
18. MLL2 Mutation Spectrum in 45 Patients with Kabuki Syndrome
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Marinus J. Blok, Joep P.M. Geraedts, Thomy de Ravel, Demis Tserpelis, Aimee D C Paulussen, Raoul C.M. Hennekam, Eric Smeets, Constance T.R.M. Schrander-Stumpel, Maaike Vreeburg, Hubert J T Smeets, Irene Stolte-Dijkstra, Wilhelmina S. Kerstjens-Frederikse, Marie José H. Van Den Boogaard, J. J. P. Schrander, Grazia M.S. Mancini, Jean-Pierre Fryns, Annemieke M. A. Wagemans, Marja W. Wessels, Y. Detisch, Koenraad Devriendt, Arie van Haeringen, Alexander P.A. Stegmann, Crool Posma-Velter, Jasper J. van der Smagt, Amsterdam Neuroscience, Amsterdam Public Health, Paediatrics, Family Medicine, Kindergeneeskunde, RS: GROW - School for Oncology and Reproduction, Klinische Genetica, Clinical Genetics, Maastricht University Medical Centre (MUMC), Maastricht University [Maastricht]-Maastricht University [Maastricht], School for Oncology & Developmental Biology (GROW), Department of Clinical Genetics, Department of Paediatrics, Department of Medical Genetics, University Medical Center [Utrecht], Center for Human and Clinical Genetics, Leiden University Medical Center (LUMC), Department of Genetics, University Medical Center Groningen [Groningen] (UMCG), Erasmus University Medical Center [Rotterdam] (Erasmus MC), Human Genetics, Erasmus University Rotterdam, Department of Pediatrics, Academic Medical Center, University of Amsterdam [Amsterdam] (UvA), Center for Human Genetics, Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Clinical sciences, Medical Genetics, and Pediatrics
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Male ,Hematologic Diseases/genetics ,Biology ,medicine.disease_cause ,PROTEIN LYSINE METHYLTRANSFERASES ,Frameshift mutation ,Exon ,Neoplasm Proteins/genetics ,EARS ,Abnormalities, Multiple/genetics ,Genetics ,medicine ,Missense mutation ,Humans ,Abnormalities, Multiple ,histone methyl transferase ,Epigenetics ,Gene ,Genetics (clinical) ,Mutation ,Kabuki syndrome ,Life Sciences ,MAKE-UP-SYNDROME ,Face/abnormalities ,medicine.disease ,Molecular biology ,Hematologic Diseases ,GENE ,Vestibular Diseases/genetics ,Neoplasm Proteins ,DNA-Binding Proteins ,Vestibular Diseases ,KS ,Histone methyltransferase ,Face ,MLL2 ,GROWTH ,Female ,DNA-Binding Proteins/genetics ,MENTAL-RETARDATION - Abstract
Kabuki Syndrome (KS) is a rare syndrome characterized by intellectual disability and multiple congenital abnormalities, in particular a distinct dysmorphic facial appearance. KS is caused by mutations in the MLL2 gene, encoding an H3K4 histone methyl transferase which acts as an epigenetic transcriptional activator during growth and development. Direct sequencing of all 54 exons of the MLL2 gene in 45 clinically well-defined KS patients identified 34 (75.6%) different mutations. One mutation has been described previously, all others are novel. Clinically, all KS patients were sporadic, and mutations were de novo for all 27 families for which both parents were available. We detected nonsense (n=11), frameshift (n=17), splice site (n=4) and missense (n=2) mutations, predicting a high frequency of absent or non-functional MLL2 protein. Interestingly, both missense mutations located in the C-terminal conserved functional domains of the protein. Phenotypically our study indicated a statistically significant difference in the presence of a distinct facial appearance (p=0.0143) and growth retardation (p=0.0040) when comparing KS patients with an MLL2 mutation compared to patients without a mutation. Our data double the number of MLL2 mutations in KS reported so far and widen the spectrum of MLL2 mutations and disease mechanisms in KS.© 2010 Wiley-Liss, Inc. PMID: 21280141 [PubMed - in process]
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- 2011
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19. The ontogeny of Robin sequence
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Geoffrey H. Sperber, Gijs van Haaften, Peter G. Farlie, Marie-José H. van den Boogaard, Emma C. Paes, Corstiaan C. Breugem, Robrecht J H Logjes, and ARD - Amsterdam Reproduction and Development
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0301 basic medicine ,micrognathia ,Mandible ,030105 genetics & heredity ,Biology ,Bioinformatics ,glossoptosis ,03 medical and health sciences ,Tongue ,Pregnancy ,medicine ,embryology ,Humans ,genetics ,Genetics (clinical) ,Sequence (medicine) ,cleft palate ,Fetus ,Pierre Robin sequence ,Pierre Robin Syndrome ,Robinsequence ,Palate ,Glossoptosis ,Gene Expression Regulation, Developmental ,Airway obstruction ,medicine.disease ,Phenotype ,030104 developmental biology ,medicine.anatomical_structure ,Embryology ,Etiology ,Female ,medicine.symptom - Abstract
The triad of micrognathia, glossoptosis, and concomitant airway obstruction defined as "Robin sequence" (RS) is caused by oropharyngeal developmental events constrained by a reduced stomadeal space. This sequence of abnormal embryonic development also results in an anatomical configuration that might predispose the fetus to a cleft palate. RS is heterogeneous and many different etiologies have been described including syndromic, RS-plus, and isolated forms. For an optimal diagnosis, subsequent treatment and prognosis, a thorough understanding of the embryology and pathogenesis is necessary. This manuscript provides an update about our current understanding of the development of the mandible, tongue, and palate and possible mechanisms involved in the development of RS. Additionally, we provide the reader with an up-to-date summary of the different etiologies of this phenotype and link this to the embryologic, developmental, and genetic mechanisms.
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- 2018
20. Mate pair sequencing for the detection of chromosomal aberrations in patients with intellectual disability and congenital malformations
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Markus J. van Roosmalen, Ellen van Binsbergen, Olivier Vanakker, Marie-José H. van den Boogaard, Mieke M. van Haelst, Sarah Vergult, Masoumeh Tavakoli-Yaraki, Marielle E M Swinkels, Silke Nowak, Kathleen Claes, Filip Roelens, Wigard P. Kloosterman, Karen Duran, Franki Speleman, Bruce Poppe, Björn Menten, Geert Mortier, Tom Sante, Edwin Cuppen, Nathalie Van der Aa, Other departments, Hubrecht Institute for Developmental Biology and Stem Cell Research, Human genetics, Amsterdam Neuroscience - Complex Trait Genetics, and Amsterdam Reproduction & Development (AR&D)
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Male ,Chromosomes, Human, Pair 21 ,Karyotype ,Biology ,Chromosomes ,Article ,Structural variation ,Genetic ,Intellectual Disability ,Gene duplication ,Chromosome Duplication ,Genetics ,Humans ,Abnormalities, Multiple ,Copy-number variation ,Genetics (clinical) ,Chromosome Aberrations ,Recombination, Genetic ,Comparative Genomic Hybridization ,Pair 18 ,Chromothripsis ,Breakpoint ,Computational Biology ,High-Throughput Nucleotide Sequencing ,Recombination ,Chromosome Banding ,Chemistry ,Human genome ,Female ,Pair 21 ,Human medicine ,Abnormalities ,DNA microarray ,Chromosomes, Human, Pair 18 ,Multiple ,Human ,Comparative genomic hybridization - Abstract
Recently, microarrays have replaced karyotyping as a first tier test in patients with idiopathic intellectual disability and/or multiple congenital abnormalities (ID/MCA) in many laboratories. Although in about 14-18% of such patients, DNA copy-number variants (CNVs) with clinical significance can be detected, microarrays have the disadvantage of missing balanced rearrangements, as well as providing no information about the genomic architecture of structural variants (SVs) like duplications and complex rearrangements. Such information could possibly lead to a better interpretation of the clinical significance of the SV. In this study, the clinical use of mate pair next-generation sequencing was evaluated for the detection and further characterization of structural variants within the genomes of 50 ID/MCA patients. Thirty of these patients carried a chromosomal aberration that was previously detected by array CGH or karyotyping and suspected to be pathogenic. In the remaining 20 patients no causal SVs were found and only benign aberrations were detected by conventional techniques. Combined cluster and coverage analysis of the mate pair data allowed precise breakpoint detection and further refinement of previously identified balanced and (complex) unbalanced aberrations, pinpointing the causal gene for some patients. We conclude that mate pair sequencing is a powerful technology that can provide rapid and unequivocal characterization of unbalanced and balanced SVs in patient genomes and can be essential for the clinical interpretation of some SVs. published online 9 October 2013
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- 2014
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21. X-exome sequencing identifies a HDAC8 variant in a large pedigree with X-linked intellectual disability, truncal obesity, gynaecomastia, hypogonadism and unusual face
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Ivo Renkens, Stef van Lieshout, Marc C van Tuil, Paulien A Terhal, Karen Duran, Raoul C.M. Hennekam, Hans Kristian Ploos van Amstel, Edwin Cuppen, Gijs van Haaften, Ies J Nijman, Nine V A M Knoers, Carolien G.F. de Kovel, Marie-José H. van den Boogaard, Magdalena Harakalova, Richard J. Sinke, Wigard P. Kloosterman, Mieke M. van Haelst, Hubrecht Institute for Developmental Biology and Stem Cell Research, Human genetics, Amsterdam Neuroscience - Complex Trait Genetics, Amsterdam Reproduction & Development (AR&D), APH - Quality of Care, Ethical, Legal, Social Issues in Genetics (ELSI), Amsterdam Neuroscience, Amsterdam Public Health, and Paediatrics
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Male ,Heterozygote ,X-linked intellectual disability ,DISORDERS ,DNA Mutational Analysis ,Biology ,Histone Deacetylases ,Craniofacial Abnormalities ,Exon ,X Chromosome Inactivation ,Intellectual disability ,Genetics ,medicine ,Humans ,Exome ,Genetic Testing ,Truncal obesity ,Genetics (clinical) ,Exome sequencing ,X chromosome ,Netherlands ,Chromosomes, Human, X ,CHROMOSOME INACTIVATION ,Hypogonadism ,Exons ,Syndrome ,medicine.disease ,HISTONE DEACETYLASE INHIBITORS ,Exon skipping ,Introns ,Pedigree ,Repressor Proteins ,Phenotype ,Genetic Loci ,Case-Control Studies ,Obesity, Abdominal ,Mutation ,Mental Retardation, X-Linked ,Gynecomastia ,Female ,MENTAL-RETARDATION - Abstract
BACKGROUND: We present a large Dutch family with seven males affected by a novel syndrome of X-linked intellectual disability, hypogonadism, gynaecomastia, truncal obesity, short stature and recognisable craniofacial manifestations resembling but not identical to Wilson-Turner syndrome. Seven female relatives show a much milder expression of the phenotype.METHODS AND RESULTS: We performed X chromosome exome (X-exome) sequencing in five individuals from this family and identified a novel intronic variant in the histone deacetylase 8 gene (HDAC8), c.164+5G>A, which disturbs the normal splicing of exon 2 resulting in exon skipping, and introduces a premature stop at the beginning of the histone deacetylase catalytic domain. The identified variant completely segregates in this family and was absent in 96 Dutch controls and available databases. Affected female carriers showed a notably skewed X-inactivation pattern in lymphocytes in which the mutated X-chromosome was completely inactivated.CONCLUSIONS: HDAC8 is a member of the protein family of histone deacetylases that play a major role in epigenetic gene silencing during development. HDAC8 specifically controls the patterning of the skull with the mouse HDAC8 knock-out showing craniofacial deformities of the skull. The present family provides the first evidence for involvement of HDAC8 in a syndromic form of intellectual disability.
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- 2012
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22. The MSX1 allele 4 homozygous child exposed to smoking at periconception is most sensitive in developing nonsyndromic orofacial clefts
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Dominique de Costa, Ingrid P.C. Krapels, Marie-José H. van den Boogaard, Régine P. M. Steegers-Theunissen, Dick Lindhout, Richard J. Sinke, Fan Liu, Cock M. van Duijn, Pulmonary Medicine, Genetic Identification, Epidemiology, Clinical Genetics, and Obstetrics & Gynecology
- Subjects
Adult ,Male ,medicine.medical_specialty ,Offspring ,Cleft Lip ,Biology ,Pregnancy ,Risk Factors ,medicine ,Genetics ,Humans ,Genetics(clinical) ,Genetic Predisposition to Disease ,Allele ,Genetics (clinical) ,Alleles ,Genetic association ,MSX1 Transcription Factor ,Obstetrics ,Homozygote ,Case-control study ,Infant ,Odds ratio ,medicine.disease ,Confidence interval ,Cleft Palate ,Risk Estimate ,Case-Control Studies ,Fertilization ,Female ,Tobacco Smoke Pollution - Abstract
Nonsyndromic orofacial clefts (OFC) are common birth defects caused by certain genes interacting with environmental factors. Mutations and association studies indicate that the homeobox gene MSX1 plays a role in human clefting. In a Dutch case-control triad study (mother, father, and child), we investigated interactions between MSX1 and the parents' periconceptional lifestyle in relation to the risk of OFC in their offspring. We studied 181 case- and 132 control mothers, 155 case- and 121 control fathers, and 176 case- and 146 control children, in which there were 107 case triads and 66 control triads. Univariable and multivariable logistic regression analyses were applied, and odds ratios (OR), 95% confidence intervals (CI) were calculated. Allele 4 of the CA marker in the MSX1 gene, consisting of nine CA repeats, was the most common allele found in both the case and control triads. Significant interactions were observed between allele 4 homozygosity of the child with maternal smoking (OR 2.7, 95% CI 1.1-6.6) and with smoking by both parents (OR 4.9, 95% CI 1.4-18.0). Allele 4 homozygosity in the mother and smoking showed a risk estimate of OR 3.2 (95% CI 1.1-9.0). If allele 4 homozygous mothers did not take daily folic acid supplements in the recommended periconceptional period, this also increased the risk of OFC for their offspring (OR 2.8, 95% CI 1.1-6.7). Our findings show that, in the Dutch population, periconceptional smoking by both parents interacts with a specific allelic variant of MSX1 to significantly increase OFC risk for their offspring. Possible underlying mechanisms are discussed.
- Published
- 2008
23. Birth prevalence of Robin sequence in the Netherlands from 2000-2010 : A retrospective population-based study in a large Dutch cohort and review of the literature
- Author
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Marie José H. Van Den Boogaard, Hanneke Basart, Chantal M.A.M. van der Horst, J. Peter W. Don Griot, Corstiaan C. Breugem, Emma C. Paes, Daan P. F. van Nunen, Johanna M. van Hagen, Plastic, Reconstructive and Hand Surgery, Human genetics, and Other Research
- Subjects
Male ,medicine.medical_specialty ,Epidemiology ,Cleft Lip ,Population ,(Pierre) Robin sequence ,medicine ,Prevalence ,Genetics ,Journal Article ,Humans ,Genetics(clinical) ,education ,Genetics (clinical) ,Netherlands ,Retrospective Studies ,Birth prevalence ,education.field_of_study ,Robin Sequence ,Pierre Robin Syndrome ,business.industry ,Medical record ,Population based study ,Cleft palate ,Cohort ,Female ,business ,Live Birth ,Demography ,Systematic search - Abstract
The birth prevalence of Robin sequence (RS) is frequently cited to be 1 in 8,500 to 14,000 live births (range: 7,1-11,8 per 100.000), which is based on just a few epidemiological studies. The objective of this study is to contribute to the limited knowledge of the epidemiology of RS by determining the frequency of RS in a cleft palate (CP) population and the estimated birth prevalence in live births in the Netherlands, using distinct diagnostic criteria. A retrospective population-based analysis of the National Cleft Registry was performed in order to obtain all CP patients registered in the Netherlands from 2000-2010, in addition to a thorough review of the medical records in three Dutch Academic Pediatric Hospitals for the same period. Furthermore, a systematic search of the literature was conducted to allow for comparison of our findings. The Dutch birth prevalence of RS was estimated to be 1:5,600 live births (or 17.7 per 100,000), with a slight female predominance. RS was estimated to occur in a third of the CP population and patients with RS had a more severe cleft grade than the general CP population. The literature search yielded 42 studies reporting the birth prevalence for RS, which varied between 1:3,900 and 1:122,400 (0.8-32.0 per 100,000), with a mean prevalence of 1:24,500 (8.0 per 100,000). The birth prevalence of RS in the Netherlands was higher than reported for most other countries when similar diagnostic criteria were used, with a slight female predominance. A third of the general CP could be classified as RS.
- Published
- 2015
- Full Text
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