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Nanoparticles (NPs) promote the horizontal gene transfer (HGT) of plasmid-borne antibiotic resistance genes (ARGs) in pure bacterial culture, but the impact of NPs on ARG dissemination in the natural environment remains unknown. This study focused on the impact of ZnO NPs on the variation in ARGs and the association among ARGs, mobile genetic elements (MGEs) and microbial communities in an estuarine aquatic environment by taking the Yangtze Estuary as a representative area. The present study showed that the abundances of total ARGs increased after exposure to ZnO NPs, particularly at low doses (0.2 and 1 mg L−1). Relatively low and environmentally relevant concentrations of ZnO NPs likely induced the selection of sul1, tetA, ermB and qnrS, whereas a high concentration (10 mg L−1) of ZnO NPs was more selective for sul2 and tetW. After normalization of the abundances of ARGs exposed to NPs to those of the corresponding blanks, the ARGs in the DH samples with relatively high salinity and relatively low NP doses showed the highest normalized values by the end of the exposure period, which indicated the high dissemination potential of ARGs in relatively brackish water. A significant positive correlation was found between ARGs and MGEs (Tn916/1545 and intI1), which indicated the high potential of ARG dissemination via HGT in estuarine waters after exposure to ZnO NPs. The response of the microbial community to ZnO exposure was dose- and time-dependent at both the phylum and genus levels. Although the absolute abundance of microbes showed a decreasing trend after exposure to ZnO NPs, the absolute abundance values normalized to the corresponding blanks generally showed a trend consisting of an initial inhibition followed by a rebound. A redundancy analysis showed that the microbial community contributed more to the variation in ARGs in estuarine waters after exposure to ZnO NPs than MGEs and dissolved Zn2+. A network analysis evaluated the possible host bacteria for the detected ARGs, and the results revealed that some of these bacteria were associated with multiple ARGs and might pose a high risk for the dissemination of ARGs in estuarine environments.

The occurrence of antibiotic resistance genes (ARGs) and their associated environmental factors in estuaries are poorly understood. In this study, we comprehensively analyzed ARGs in both water and sediments from inlet to outlet of the Yangtze Estuary, China. The relative abundances of ARGs were higher in the turbidity maximum zone (TMZ) than other sites, implying that suspended particulate matter (SPM) was the major reservoir for ARGs in water. ARGs showed an increasing trend from inlet to outlet in sediments. Positively correlation between intI1 and sul1 in both water and sediments indicated that sul1 may be regulated by intI1. Correlation analysis and redundancy analysis showed that the spatial variations of estuarine ARGs were positively correlated with sample properties (e.g., temperature, SPM, pH) and chemical pollutants (e.g., heavy metals and antibiotic residues), among which chemical pollutants were the major drivers for the ARG distribution in both water and sediments.

This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42 − and total organic carbon, while bacterial diversity was significantly correlated with SO42 − and total nitrogen. At different taxonomic levels, both the dominant taxa and their abundances varied among the eight samples, with Proteobacteria being the most dominant phylum in general. Cluster analysis revealed that the bacterial community structure was influenced by river runoff and sewerage discharge. Moreover, SO42 −, salinity and total phosphorus were the vital environmental factors that influenced the bacterial community structure. Quantitative PCR and sequencing of sulphate-reducing bacteria indicated that the sulphate reduction process occurs frequently in intertidal sediments. These findings are important to understand the microbial ecology and biogeochemical cycles in estuarine environments.

Understanding the behavior and risk of nanoparticles (NPs) in the aquatic environment is currently limited by the lack of quantitative characterization of NPs in the environmental matrices, such as sediments. In this study, based on the single particle (SP)-ICP-MS technique, metal-containing NPs, including Ti- and Zn-containing NPs, were analyzed in sediments taken along the Yangtze Estuary. Combined with the traditional sequential extraction method that has been widely used for metal risk assessment, different single extraction methods were used to understand the association of NPs with different chemical fractions in sediments and their potential environmental implications. Ti-containing NPs, with an average size of 81 nm, ranged from 3.02 × 107 parts/mg to 9.61 × 107 parts/mg, and Zn-containing NPs, with an average size of 41 nm, ranged from 2.47 × 106 parts/mg to 1.21 × 107 parts/mg. Both correlation and redundancy analyses showed that particle concentrations of Ti-containing NPs in sediment were significantly correlated to the Ti-containing NPs in the residual fraction and salinity, indicating that Ti-containing NPs in sediments may be dominated by Ti-containing NPs in the residue fractions of sediments. Large amounts of these NPs may be released from the residual fraction that has been considered to be not bioavailable and “environmentally safe” in the traditional environmental risk assessment of metals in sediments. Zn-containing NPs, mostly associated with carbonates, were positively correlated to all the bioavailable fractions of Zn in sediments, suggesting that these NPs may be largely presented in the bioavailable fraction. This study showed that, vast numbers of NPs with minute sizes were present in estuarine sediments, and that they were associated with different chemical fractions with different potential environmental risks. The study findings call for further research to update the traditional risk assessment method.

In the contaminated coastal sediments, variations of microbial community can reflect the impact of anthropogenic activities. The identification, evaluation and monitoring of the potential bio-indicator species and biomarker communities are vital for the ecological studies in sedimentary environments. Based on the high-throughput sequencing, the microbial communities were characterized in the sediments along the Yangtze Estuary and its coastal area. The results showed that the structure and composition of microbial communities varied greatly among different sampling sites at the phyla level, especially for Euryarchaeota. Metabolic pathway and quantitative PCR analyses suggested that the methane metabolism-related microbes were mainly included in the phylum of Euryarchaeota. Elevated abundances of methane metabolism-related microbes were found at Shidongkou (SDK) and Wusongkou (WSK), where microbes were seriously impacted by the wastewater treatment plant (WWTP) effluent and urban runoff. By comparing with the Euryarchaeota in WWTP sludge, the relatively high abundance of Euryarchaeota in sediment at SDK may be mainly related to the massive growth of indigenous species, promoted by anthropogenic nutrients. Moreover, redundancy discriminant analysis and correlation analysis revealed that methanogens and methanotrophs mainly respond to the nutrients and metals, such as total organic carbon, total phosphorus, total nitrogen, SO42-, NO2-, NH4+, Cr, and Zn, which were often related to human activities. Network analyses showed that the species related to the metabolism of methane may play a vital role in the interassociation among different microbial communities. Therefore, methanogens, methanotrophs and their community compositions could be considered as potential bio-indicator species and biomarker communities, indicating anthropogenic activities in the sediments along the Yangtze Estuary and its coastal area.

Antibiotics resistance genes (ARGs) are considered as an emerging pollutant among various environments. As a sink of ARGs, a comprehensive study on the spatial and temporal distribution of ARGs in the estuarine sediments is needed. In the present study, six ARGs were determined in sediments taken along the Yangtze Estuary temporally and spatially. The sulfonamides, tetracyclines and fluoroquinolones resistance genes including sul1, sul2, tetA, tetW, aac(6')-Ib, and qnrS, were ubiquitous, and the average abundances of most ARGs showed significant seasonal differences, with relative low abundances in winter and high abundances in summer. Moreover, the relative high abundances of ARGs were found at Shidongkou (SDK) and Wusongkou (WSK), which indicated that the effluents from the wastewater treatment plant upstream and inland river discharge could influence the abundance of ARGs in sediments. The positive correlation between intI1 and sul1 implied intI1 may be related to the occurrence and propagation of sulfonamides resistance genes. Correlation analysis and redundancy discriminant analysis showed that antibiotic concentrations had no significant correlation to their corresponding ARGs, while the total extractable metal, especially the bioavailable metals, as well as other environmental factors including temperature, clay, total organic carbon and total nitrogen, could regulate the occurrence and distribution of ARGs temporally and spatially. Our findings suggested the comprehensive effects of multiple pressures on the distribution of ARGs in the sediments, providing new insight into the distribution and dissemination of ARGs in estuarine sediments, spatially and temporally.

Ubiquitous in the aquatic environment, sulphate-reducing bacteria (SRB) are considered one of the dominant microorganisms involved in the degradation of sulphate. This study focused on the spatial and temporal distributions of SRB in the Scirpus triquter rhizosphere sediments with a comparison to non-rhizosphere sediments and evaluated the implication of SRB to the bioavailability of metals in the Yangtze Estuary. The results showed that taking dsrB as the target gene, SRB abundances in rhizosphere sediments were significantly higher than those in non-rhizosphere sediments (P

Biofilms are ubiquitous throughout aquatic environments and they are thought to promote the acquisition and dissemination of antibiotic resistant genes (ARGs). This study focused on the occurrence and distribution of five types of ARG in naturally-occurring biofilms, in comparison to associated sediment and water samples, from the Yangtze Estuary, which borders the meta-city of Shanghai, China. The detection frequency and abundances of most ARGs showed the following order: biofilm > sediment > water, which can be attributed to a high level of antibiotics and metals that can accelerate the generation and propagation of ARGs in biofilms. Most of ARG abundances were contributed by extracellular DNA (eDNA) in biofilm and sediment samples. ARGs (sul1, sul2, tetA and tetW) in eDNA were significantly correlated with TOC in both biofilm and sediment samples. Furthermore, both intracellular DNA-associated ARGs per gram of microbial biomass carbon (MBC) and eDNA-associated ARGs per gram of non-MBC and were higher in biofilms than sediments, and the partitioning coefficients of ARGs in eDNA between biofilm and water were higher than those between sediment and water. Our results provide new insight for evaluating the occurrence and abundance of ARGs in aquatic environments, confirming that biofilms are a significant sink for ARGs in the estuarine environment.

Many studies have examined the acute toxicity of nanoparticles (NPs) towards model bacteria. In this study, we report the time-dependent effects of ZnO NPs on native, selected Zn-resistant and dominant bacteria in estuarine waters. An initial inhibition of bacterial growth followed by a recovery at 24 h was observed, and this rebound phenomenon was particularly notable when the raw water samples were treated with relatively high ZnO NP concentrations (1 and 10 mg/L).By comparing the groups treated with Zn2+, Zn2+ was shown to largely explain the acute cytotoxic effect of ZnO NPs on bacteria in raw waters. Furthermore, similar to the native bacteria, especially the dominant bacteria, the viability of Escherichia coli (E. coli) decreased with the increasing treatments time and the concentrations of ZnO NPs in water with different salinities. Moreover, the expression of Zn-resistance genes including zntA and zntR in E. coli suggested that the Zn-resistance system in E. coli can be activated to defend against the stress of Zn2+ released from ZnO NPs, and salinity may promote this process in estuarine aquatic systems. Thus, the effect of ZnO NPs on bacteria in estuarine water bodies is likely determined by the synergistic effect of environmental salinity and dissolved Zn ions. As such, our findings are of high relevance and importance for understanding the ecological disturbances caused by anthropogenic NPs in estuarine environments.