Search

The in trust sweetpotato collection housed by the International Center of Potato (CIP) is one of the largest assemblages of plant material representing the genetic resources of this important staple crop. The collection currently contains almost 6,000 accessions of Ipomoea batatas (cultivated sweetpotato) and over 1,000 accessions of sweetpotato crop wild relatives (CWRs). In this study, the entire cultivated collection (5,979 accessions) was genotyped with a panel of 20 simple sequence repeat (SSR) markers to assess genetic identity, diversity, and population structure. Genotyping and phenotyping of in vitro plantlets and mother plants were conducted simultaneously on 2,711 accessions (45% of the total collection) to identify and correct possible genetic identity errors which could have occurred at any time over the thirty plus years of maintenance in the in vitro collection. Within this group, 533 accessions (19.6%) had errors in identity. Field evaluations of morphological descriptors were carried out to confirm the marker data. A phylogenetic tree was constructed to reveal the intraspecific relationships in the population which uncovered high levels of redundancy in material from Peru and Latin America. These genotypic data were supported by morphological data. Population structure analysis demonstrated support for four ancestral populations with many of the accessions having lower levels of gene flow from the other populations. This was especially true of germplasm derived from Peru, Ecuador, and Africa. The set of 20 SSR markers was subsequently utilized to examine a subset of 189 accessions from the USDA sweetpotato germplasm collection and to identify and reconcile potential errors in the identification of clones shared between these collections. Marker analysis demonstrated that the USDA subset of material had 65 unique accessions that were not found in the larger CIP collection. As far as the authors are aware, this is the first report of genotyping an entire sweetpotato germplasm collection in its entirety. [ABSTRACT FROM AUTHOR]

Sweetpotato (Ipomoea batatas) plays a critical role in food security and is the most important root crop worldwide following potatoes and cassava. In the United States (US), it is valued at over $700 million USD. There are two sweetpotato germplasm collections (Plant Genetic Resources Conservation Unit and US Vegetable Laboratory) maintained by the USDA, ARS for sweetpotato crop improvement. To date, no genome-wide assessment of genetic diversity within these collections has been reported in the published literature. In our study, population structure and genetic diversity of 417 USDA sweetpotato accessions originating from 8 broad geographical regions (Africa, Australia, Caribbean, Central America, Far East, North America, Pacific Islands, and South America) were determined using single nucleotide polymorphisms (SNPs) identified with a genotyping-by-sequencing (GBS) protocol, GBSpoly, optimized for highly heterozygous and polyploid species. Population structure using Bayesian clustering analyses (STRUCTURE) with 32,784 segregating SNPs grouped the accessions into four genetic groups and indicated a high degree of mixed ancestry. A neighbor-joining cladogram and principal components analysis based on a pairwise genetic distance matrix of the accessions supported the population structure analysis. Pairwise F ST values between broad geographical regions based on the origin of accessions ranged from 0.017 (Far East – Pacific Islands) to 0.110 (Australia – South America) and supported the clustering of accessions based on genetic distance. The markers developed for use with this collection of accessions provide an important genomic resource for the sweetpotato community, and contribute to our understanding of the genetic diversity present within the US sweetpotato collection and the species. [ABSTRACT FROM AUTHOR]

Crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here, we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme Southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding. [ABSTRACT FROM AUTHOR]

Highlights: [•] Seed oil content among nine Capsicum species ranged from 10.8% to 35.9%. [•] Linoleic acid was the predominant fatty acid in all samples. [•] Seed composition of the wild taxa was similar to that of the cultivated species. [Copyright &y& Elsevier]

Two loofah (Luffa) species, the ridge gourd (Luffa acutangula (L.) Roxb.) and the sponge gourd (L. cylindrica (L.) M. Roem.; syn. L. aegyptiaca), are cultivated widely in Asia by smallholder famers. Both species have significant economic and nutritional importance. However, Tomato leaf curl New Delhi virus (ToLCNDV) and downy mildew (DM) caused by Pseudoperonospora cubensis are important biotic constraints to loofah production throughout Asia. Loofah landrace-derived breeding lines, developed at the World Vegetable Center (WorldVeg), were evaluated at the WorldVeg East and Southeast Asia Research and Training Station, Kasetsart University, Kamphaeng Saen, Thailand—where natural epidemics of ToLCNDV and DM regularly occur. The lines were also evaluated for other commercially important horticultural traits such as days to 50% staminate and pistillate flowering, fruit color, fruit bitterness, and market segment classification. Thirteen and 59 lines of ridge gourd and sponge gourd, respectively, were determined to be resistant to both ToLCNDV and DM. These lines covered all market segments of loofah and exhibited variability for all of the evaluated horticultural traits. The results of these evaluations and their implications on loofah breeding are discussed. [ABSTRACT FROM AUTHOR]

During 2012-14, 737 sweetpotato, Ipomoea batatas (L.) Lam. (Convolvulaceae), plant introduction (PI) accessions from the U.S. Department of Agriculture, Agricultural Research Service (USDA, ARS) sweetpotato germplasm collection were evaluated for several phenotypic leaf and plant characteristics, and a photographic record of each accession was made. Data were prepared for placement in the USDA, ARS Germplasm Resources Information Network (GRIN) database and the sweetpotato ontology. The parameters recorded for each genotype were canopy coverage, vine length, general leaf outline, leaf lobing, shape of the central leaf lobe, number of leaf points, leaf petiole length, leaf width, leaf length, leaf width 3 length, and leaf width/length (aspect ratio). The data indicate that there is wide genetic diversity for vegetative phenotypic characteristics within the USDA, ARS sweetpotato germplasm collection. This study provides important phenotype information for the USDA, ARS sweetpotato collection that has been lacking and can be used for curation of the collection and by researchers and breeders working with this important global food crop. [ABSTRACT FROM AUTHOR]

Root traits are an important component for productive plant performance. Roots offer immediate absorptive surfaces for water and nutrient acquisition and are thus critical to crop growth and response to biotic and abiotic stresses. In addition, roots can provide the first line of defense against soilborne pathogens. Watermelon crop performance is often challenged by inclement weather and environmental factors. A resilient root system can support the watermelon crop's performance across a diverse range of production conditions. In this study, 335 four-day-old watermelon (Citrullus spp.) seedlings were evaluated for total root length, average root diameter, total root surface area, and total root volume. Total root length varied from 8.78 to 181 cm (20.6- fold variation), total surface area varied from 2 to 35.5 cm2, and average root diameter and total root volume had an 8- and 29.5-fold variation, respectively. Genotypes PI 195927 (Citrullus colocynthis) and PI 674448 (Citrullus amarus) had the largest total root length values. Accessions PI 674448 and PI 494817 (C. amarus) had the largest total root surface area means. Watermelon cultivars (Citrullus lanatus) had a relatively smaller root system and significantly fewer fibrous roots when compared with the roots of the other Citrullus spp. Positive genetic correlations were identified among total root length, total root surface area, and total root volume. This genetic information will be useful in future breeding efforts to select for multiple root architecture traits in watermelon. Germplasm identified in this study that exhibit superior root traits can be used as parental choices to improve watermelon for root traits. [ABSTRACT FROM AUTHOR]