1. Computational Design and Study of Artificial Selenoenzyme with Controllable Activity Based on an Allosteric Protein Scaffold.
- Author
-
Li S, Xu W, Chu S, Ma N, Liu S, Li X, Wang T, Jiang X, Li F, Li Y, Zhang D, Luo Q, and Liu J
- Subjects
- Allosteric Site, Catalysis, Catalytic Domain, Crystallization, Hydrogen Bonding, Mutation, Protein Conformation, Recoverin genetics, Thermodynamics, Glutathione Peroxidase chemistry, Molecular Docking Simulation, Molecular Dynamics Simulation, Organoselenium Compounds chemistry, Recoverin chemistry
- Abstract
The establishment of new enzymatic function in an existing scaffold is a great challenge for protein engineers. In previous work, a highly efficient artificial selenoenzyme with controllable activity was constructed, based on a Ca
2+ -responsive recoverin (Rn) protein. In this study, a design strategy combining docking, molecular dynamics, and MM-PBSA is presented, to predict the catalytically active site of glutathione peroxidase (GPx) on the allosteric domain of Rn. The energy contributions of the binding hot spot residues are evaluated further by energy decomposition analysis to determine the detailed substrate recognition mechanism of Rn, which provides clear guidance for artificial enzyme design for improved substrate binding (Michaelis-Menten constant, Km )., (© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)- Published
- 2019
- Full Text
- View/download PDF