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Data in the form of graphs are prevalent, ranging from biological and social networks to citation graphs and the Web. In particular, most real-world graphs are heterogeneous, containing objects of multiple types, which present new opportunities for many problems on graphs. Consider a typical proximity search problem on graphs, which boils down to measuring the proximity between two given nodes. Most earlier studies on homogeneous or bipartite graphs only measure a generic form of proximity, without accounting for different “semantic classes”—for instance, on a social network two users can be close for different reasons, such as being classmates or family members, which represent two distinct semantic classes. Learning these semantic classes are made possible on heterogeneous graphs through the concept of metagraphs. In this study, we identify metagraphs as a novel and effective means to characterize the common structures for a desired class of proximity. Subsequently, we propose a family of metagraph-based proximity, and employ a learning-to-rank technique that automatically learns the right parameters to suit the desired semantic class. In terms of efficiency, we develop a symmetry-based matching algorithm to speed up the computation of metagraph instances. Empirically, extensive experiments reveal that our metagraph-based proximity substantially outperforms the best competitor by more than 10 percent, and our matching algorithm can reduce matching time by more than half. As a further generalization, we aim to derive a general node and edge representation for heterogeneous graphs, in order to support arbitrary machine learning tasks beyond proximity search. In particular, we propose the finer-grained anchored metagraph, which is capable of discriminating the roles of nodes within the same metagraph. Finally, further experiments on the general representation show that we can outperform the state of the art significantly and consistently across various machine learning tasks. [ABSTRACT FROM AUTHOR]

The identification of network motifs has important applications in numerous domains, such as pattern detection in biological networks and graph analysis in digital circuits. However, mining network motifs is computationally challenging, as it requires enumerating subgraphs from a real-life graph, and computing the frequency of each subgraph in a large number of random graphs. In particular, existing solutions often require days to derive network motifs from biological networks with only a few thousand vertices. To address this problem, this paper presents a novel study on network motif discovery using Graphical Processing Units (GPUs). The basic idea is to employ GPUs to parallelize a large number of subgraph matching tasks in computing subgraph frequencies from random graphs, so as to reduce the overall computation time of network motif discovery. We explore the design space of GPU-based subgraph matching algorithms, with careful analysis of several crucial factors (such as branch divergences and memory coalescing) that affect the performance of GPU programs. Based on our analysis, we develop a GPU-based solution that (i) considerably differs from existing CPU-based methods in how it enumerates subgraphs, and (ii) exploits the strengths of GPUs in terms of parallelism while mitigating their limitations in terms of the computation power per GPU core. With extensive experiments on a variety of biological networks, we show that our solution is up to two orders of magnitude faster than the best CPU-based approach, and is around $20$ times more cost-effective than the latter, when taking into account the monetary costs of the CPU and GPUs used. [ABSTRACT FROM PUBLISHER]