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Molecular characterisation (using tufA and rbcL DNA sequences) of newly collected specimens of the genus Caulerpa in southern Australia identified 24 species and one variety, which, with the addition of four species and one variety recorded previously but not found during the present study, brings the total number of Caulerpa taxa in the region to 28 species and two varieties. Three new species are described based on molecular and morphological data: Caulerpa crispata comb. & stat. nov. (for C. longifolia f. crispata), Caulerpa coppejansii sp. nov., and Caulerpa perplexa sp. nov. Caulerpa coppejansii is a tropical West Pacific species and is included here due to its similarity to the southern Australian Caulerpa sedoides. Caulerpa perplexa is found in Western Australia and is a cryptic sister species of C. parvifolia Harvey from eastern Australia. The name Caulerpa muelleri is reinstated for C. flexilis var. muelleri. A new name, Caulerpa lucasii nom. nov., is proposed for Caulerpa annulata Lucas nom. illeg., a taxon shown to be distinct from Caulerpa hodgkinsoniae. Caulerpa corynephora and Caulerpa fergusonii are newly reported from the region, and a population of the potentially invasive Caulerpa cylindracea is reported from Portland, Victoria. An updated nomenclature is provided and reference tufA sequences are proposed, as well as an updated identification key for southern Australian Caulerpa species. [ABSTRACT FROM AUTHOR]

The siphonous green algal family Caulerpaceae includes the monotypic genus Caulerpella and the species-rich genus Caulerpa. A molecular phylogeny was inferred from chloroplast tufA and rbcL DNA sequences analyzed together with a five marker dataset of non-caulerpacean siphonous green algae. Six Caulerpaceae lineages were revealed, but relationships between them remained largely unresolved. A Caulerpella clade representing multiple cryptic species was nested within the genus Caulerpa. Therefore, that genus is subsumed and Caulerpa ambigua Okamura is reinstated. Caulerpa subgenus status is proposed for the six lineages substantiated by morphological characters, viz., three monotypic subgenera Cliftonii, Hedleyi, and Caulerpella, subgenus Araucarioideae exhibiting stolons covered with scale-like appendages, subgenus Charoideae characterized by a verticillate branching mode, and subgenus Caulerpa for a clade regarded as the Caulerpa core clade. The latter subgenus is subdivided in two sections, i.e., Sedoideae for species with pyrenoids and a species-rich section Caulerpa. A single section with the same name is proposed for each of the other five subgenera. In addition, species status is proposed for Caulerpa filicoides var. andamanensis (W.R. Taylor). All Caulerpa species without sequence data were examined (or data were taken from species descriptions) and classified in the new classification scheme. A temporal framework of Caulerpa diversification is provided by calibrating the phylogeny in geological time. The chronogram suggests that Caulerpa diversified into subgenera and sections after the Triassic- Jurassic mass extinction and that infra-section species radiation happened after the Cretaceous- Tertiary mass extinction. [ABSTRACT FROM AUTHOR]