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Feed management decisions are crucial in mitigating greenhouse gas (GHG) and nitrogen (N) emissions from ruminant farming systems. However, assessing the downstream impact of diet on emissions in dairy production systems is complex, due to the multifunctional relationships between a variety of distinct but interconnected sources such as animals, housing, manure storage, and soil. Therefore, there is a need for an integral assessment of the direct and indirect GHG and N emissions that considers the underlying processes of carbon (C), N and their drivers within the system. Here we show the relevance of using a cascade of process-based (PB) models, such as Dutch Tier 3 and (Manure)-DNDC (Denitrification-Decomposition) models, for capturing the downstream influence of diet on whole-farm emissions in two contrasting case study dairy farms: a confinement system in Germany and a pasture-based system in New Zealand. Considerable variation was found in emissions on a per hectare and per head basis, and across different farm components and categories of animals. Moreover, the confinement system had a farm C emission of 1.01 kg CO 2 -eq kg -1 fat and protein corrected milk (FPCM), and a farm N emission of 0.0300 kg N kg -1 FPCM. In contrast, the pasture-based system had a lower farm C and N emission averaging 0.82 kg CO 2 -eq kg -1 FPCM and 0.006 kg N kg -1 FPCM, respectively over the 4-year period. The results demonstrate how inputs and outputs could be made compatible and exchangeable across the PB models for quantifying dietary effects on whole-farm GHG and N emissions., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)

Nitrous oxide (N 2 O) is a strong greenhouse gas produced by biotic/abiotic processes directly linked to both fungal and prokaryotic communities that produce, consume or create conditions leading to its emission. In soils exposed to nitrogen (N) in the form of urea, an ecological succession is triggered resulting in a dynamic turnover of microbial populations. However, knowledge of the mechanisms controlling this succession and the repercussions for N 2 O emissions remain incomplete. Here, we monitored N 2 O production and fungal/prokaryotic community changes (via 16S and 18S amplicon sequencing) in soil microcosms exposed to urea. Contributions of microbes to emissions were determined using biological inhibitors. Results confirmed that urea leads to shifts in microbial community assemblages by selecting for certain microbial groups (fast growers) as dictated through life history strategies. Urea reduced overall community diversity by conferring dominance to specific groups at different stages in the succession. The diversity lost under urea was recovered with inhibitor addition through the removal of groups that were actively growing under urea indicating that species replacement is mediated in part by competition. Results also identified fungi as significant contributors to N 2 O emissions, and demonstrate that dominant fungal populations are consistently replaced at different stages of the succession. These successions were affected by addition of inhibitors which resulted in strong decreases in N 2 O emissions, suggesting that fungal contributions to N 2 O emissions are larger than that of prokaryotes., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier B.V. All rights reserved.)

The nitrogen (N) cycle represents one of the most well-studied systems, yet the taxonomic diversity of the organisms that contribute to it is mostly unknown, or linked to poorly characterized microbial groups. While new information has allowed functional groups to be refined, they still rely on a priori knowledge of enzymes involved and the assumption of functional conservation, with little connection to the role the transformations, plays for specific organisms. Here, we use soil microcosms to test the impact of N deposition on prokaryotic communities. By combining chemical, genomic and transcriptomic analysis, we are able to identify and link changes in community structure to specific organisms catalysing given chemical reactions. Urea deposition led to a decrease in prokaryotic richness, and a shift in community composition. This was driven by replacement of stable native populations, which utilize energy from N-linked redox reactions for physiological maintenance, with fast responding populations that use this energy for growth. This model can be used to predict response to N disturbances and allows us to identify putative life strategies of different functional and taxonomic groups, thus providing insights into how they persist in ecosystems by niche differentiation. [ABSTRACT FROM AUTHOR]

Bioenergy from crops is expected to make a considerable contribution to climate change mitigation. However, bioenergy is not necessarily carbon neutral because emissions of CO2, N2O and CH4 during crop production may reduce or completely counterbalance CO2 savings of the substituted fossil fuels. These greenhouse gases ( GHGs) need to be included into the carbon footprint calculation of different bioenergy crops under a range of soil conditions and management practices. This review compiles existing knowledge on agronomic and environmental constraints and GHG balances of the major European bioenergy crops, although it focuses on dedicated perennial crops such as M iscanthus and short rotation coppice species. Such second-generation crops account for only 3% of the current European bioenergy production, but field data suggest they emit 40% to >99% less N2O than conventional annual crops. This is a result of lower fertilizer requirements as well as a higher N-use efficiency, due to effective N-recycling. Perennial energy crops have the potential to sequester additional carbon in soil biomass if established on former cropland (0.44 Mg soil C ha−1 yr−1 for poplar and willow and 0.66 Mg soil C ha−1 yr−1 for M iscanthus). However, there was no positive or even negative effects on the C balance if energy crops are established on former grassland. Increased bioenergy production may also result in direct and indirect land-use changes with potential high C losses when native vegetation is converted to annual crops. Although dedicated perennial energy crops have a high potential to improve the GHG balance of bioenergy production, several agronomic and economic constraints still have to be overcome. [ABSTRACT FROM AUTHOR]

The effectiveness of chemical amendment of pig slurry to ameliorate phosphorus (P) losses in runoff is well studied, but research mainly has concentrated only on the runoff pathway. The aims of this study were to investigate changes to leachate nutrient losses, soil properties and greenhouse gas (GHG) emissions due to the chemical amendment of pig slurry spread at 19 kg total phosphorus (TP), 90 kg total nitrogen (TN), and 180 kg total carbon (TC) ha−1. The amendments examined were: (1) commercial grade liquid alum (8% Al2O3) applied at a rate of 0.88:1 [Al:TP], (2) commercial-grade liquid ferric chloride (38% FeCl3) applied at a rate of 0.89:1 [Fe:TP] and (3) commercial-grade liquid poly-aluminium chloride (PAC) (10% Al2O3) applied at a rate of 0.72:1 [Al:TP]. Columns filled with sieved soil were incubated for 8 mo at 10 °C and were leached with 160 mL (19 mm) distilled water wk−1. All amendments reduced the Morgan's phosphorus and water extractable P content of the soil to that of the soil-only treatment, indicating that they have the ability to reduce P loss in leachate following slurry application. There were no significant differences between treatments for nitrogen (N) or carbon (C) in leachate or soil, indicating no deleterious impact on reactive N emissions or soil C cycling. Chemical amendment posed no significant change to GHG emissions from pig slurry, and in the cases of alum and PAC, reduced cumulative N2O and CO2 losses. Chemical amendment of land applied pig slurry can reduce P in runoff without any negative impact on nutrient leaching and GHG emissions. Future work must be conducted to ascertain if more significant reductions in GHG emissions are possible with chemical amendments. [Copyright &y& Elsevier]

Abstract: Laboratory denitrifying bioreactors, which use an organic carbon (C) rich media to enhance microbial reduction of nitrate (NO3 −) to nitrogen (N) gases, are used worldwide to protect surface and groundwater. To highlight potential adverse effects of denitrifying bioreactors, NO3 − removal rates (gNO3-Nm−3 d−1 removed), NO3 − removal efficiencies (% removed minus production of other N species) and release of greenhouse gases and solutes (ammonium (NH4 +), phosphorus (P) and organic carbon (C)) were compared in this study using different media: lodgepole pine woodchips (LPW), cardboard, lodgepole pine needles (LPN), barley straw (BBS) and a soil control. Results showed that NO3 − removals were consistently >99% for all media for initial leaching and steady-state periods. When pollution swapping was considered, this ranged from 67% for LPW to 95% for cardboard. Sustained P releases over the threshold for the occurrence of eutrophication were measured in all media. Greenhouse gas emissions were dominated by carbon dioxide (CO2) and methane (CH4) fluxes with little nitrous oxide (N2O) release due to the anaerobic conditions prevalent within the bioreactors. Comparisons of different media, under steady-state conditions, showed that C fluxes were highest for cardboard and BBS bioreactors. Carbon fluxes from cardboard bioreactors ranged from 11.6gCm−2 d−1 to 13.9gCm−2 d−1, whilst BBS emissions ranged from 3.9gCm−2 d−1 to 4.4gCm−2 d−1. These C emissions were correlated with the total surface area exposed within the media. Such investigations highlight the need to consider pollution swapping during the initial leaching period and should improve design criteria for field-scale bioreactors used to mitigate shallow groundwater NO3 −. [Copyright &y& Elsevier]