1. Resolving Heart Regeneration by Replacement Histone Profiling.
- Author
-
Goldman JA, Kuzu G, Lee N, Karasik J, Gemberling M, Foglia MJ, Karra R, Dickson AL, Sun F, Tolstorukov MY, and Poss KD
- Subjects
- Animals, Animals, Genetically Modified, Base Sequence, Binding Sites, Enhancer Elements, Genetic genetics, Gene Expression Regulation, Developmental, Histones genetics, Myocytes, Cardiac cytology, Myocytes, Cardiac metabolism, Nucleotide Motifs genetics, Regeneration genetics, Transcription Factors metabolism, Zebrafish genetics, Zebrafish metabolism, Heart physiology, Histones metabolism, Regeneration physiology, Zebrafish physiology
- Abstract
Chromatin regulation is a principal mechanism governing animal development, yet it is unclear to what extent structural changes in chromatin underlie tissue regeneration. Non-mammalian vertebrates such as zebrafish activate cardiomyocyte (CM) division after tissue damage to regenerate lost heart muscle. Here, we generated transgenic zebrafish expressing a biotinylatable H3.3 histone variant in CMs and derived cell-type-specific profiles of histone replacement. We identified an emerging program of putative enhancers that revise H3.3 occupancy during regeneration, overlaid upon a genome-wide reduction of H3.3 from promoters. In transgenic reporter lines, H3.3-enriched elements directed gene expression in subpopulations of CMs. Other elements increased H3.3 enrichment and displayed enhancer activity in settings of injury- and/or Neuregulin1-elicited CM proliferation. Dozens of consensus sequence motifs containing predicted transcription factor binding sites were enriched in genomic regions with regeneration-responsive H3.3 occupancy. Thus, cell-type-specific regulatory programs of tissue regeneration can be revealed by genome-wide H3.3 profiling., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF