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The use of functional feed additives is an important approach to both, prevent and fight, viral diseases in aquaculture. In this regard, microalgae-derived products, and, more specifically, microalgal exopolysaccharides (EPSs), have attracted attention, since multiple biotechnological applications are being described for these molecules. Furthermore, depending on culture conditions, the composition and, therefore, properties of EPSs can vary. In the present study, the antiviral activity of EPSs from Tetraselmis suecica and Porphyridium cruentum cultured under autotrophic and heterotrophic conditions has been evaluated in vitro against Viral Haemorrhagic Septicaemia Virus (VHSV), an important pathogen in fish farming. Results showed that EPSs from both species have anti-VHSV activity. T. suecica EPSs from autotrophic cultures showed the strongest effect, since both, adsorption and post-adsorption phases of the VHSV multiplication cycle were affected. In contrast, both, autotrophic and heterotrophic P. cruentum EPSs showed anti-VHSV activity only after the adsorption phase. These results pave the way to use these EPSs to fight VHSV infections, and animate to evaluate the EPS antiviral activity against other viral pathogens relevant to the aquaculture industry. [ABSTRACT FROM AUTHOR]

Soil respiration (Rs) is the second largest carbon (C) flux to the atmosphere and our understanding of how Rs and its components shift with plant-community composition remains an important question. We used high-frequency soil respiration measurements and root exclusion to evaluate how Rs, autotrophic respiration (Ra) and heterotrophic respiration (Rh) vary between a semi-arid perennial shrub community and annual invasive community. Over two growing seasons, total Rs was 40% higher under annual vegetation compared to shrubs. Partitioning revealed consistently higher Ra under annual vegetation which accounted for most of the difference in Rs. Under annual vegetation, Ra increased soon after the first rain events and remained high despite cooling temperatures while shrub Ra increased only when soil temperature began to warm up. The Rh rates were similar between vegetation types when daily soil temperatures were lower than 20 °C. As soil temperatures increased and soil moisture dropped below 10%, Rh was consistently higher under annual vegetation than shrubs. Seasonal dynamics of Rs and Rh were best modeled with an interaction term between soil moisture and temperature with significantly different model parameters for each vegetation type. Differences in the timing and magnitude of Rs and Ra between vegetation types are consistent with phenological differences between shrubs and annuals. Under annuals, larger Rh at high temperatures suggests that expansion of annual vegetation and future hotter and drier conditions could lead to greater C losses from this semi-arid shrub system. [ABSTRACT FROM AUTHOR]

Recent advances in the partitioning of autotrophic from heterotrophic respiration processes in soils in conjunction with new high temporal resolution soil respiration data sets offer insights into biotic and environmental controls of respiration. Besides temperature, many emerging controlling factors have not yet been incorporated into ecosystem-scale models. We synthesize recent research that has partitioned soil respiration into its process components to evaluate effects of nitrogen, temperature and photosynthesis on autotrophic flux from soils at the ecosystem level. Despite the widely used temperature dependence of root respiration, gross primary productivity (GPP) can explain most patterns of ecosystem root respiration (and to some extent heterotrophic respiration) at within-season time-scales. Specifically, heterotrophi crespiration is influenced by a seasonally variable supply of recent photosynthetic products in the rhizosphere. The contribution of stored root carbon (C) to root respiratory fluxes also varied seasonally, partially decoupling the proportion of photosynthetic C driving root respiration. In order to reflect recent insights, new hierarchical models, which incorporate root respiration as a primary function of GPP and which respond to environmental variables by modifying Callocation belowground, are needed for better prediction of future ecosystem C sequestration.

In streams, gross primary production (GPP) and ecosystem respiration (ER) (i.e., stream metabolism) control the transport and fate of nutrients and organic carbon and vice versa. The importance of short-term and local factors in driving these processes is well known in the literature. However, little information exists regarding the extent of temporal variability of stream metabolism and how both local physicochemical and broad-scale climatic drivers affect this variability. We used 7 years of field data from an open-canopy headwater stream ecosystem in the southwestern United States to quantify the extent of seasonal and inter-annual variability in stream metabolism (GPP, ER, and net ecosystem production [NEP]) and to assess if temporal variation in these processes was related to the magnitude of snowmelt runoff. In spring, seasonal mean ER (p = 0.025, r 2 = 0.67) and NEP (p = 0.004, r 2 = 0.83) were more strongly related to discharge (Q) than GPP (p = 0.19, r 2 = 0.32), potentially because of an increased influx of nutrients and organic carbon during years with higher snowmelt runoff. There were no strong relationships between seasonal mean GPP and Q , light, temperature, turbidity, and specific conductance (p ≥ 0.27, r 2 ≤ 0.18). Our long-term data revealed unanticipated shifts from autotrophic to heterotrophic status within and across years. However, this variability was not strongly associated with environmental factors at either local (i.e., Q or photosynthetically-active radiation) or global (i.e., El Niño-Southern Oscillation) scales. Previous paradigms hold that local attributes dictated by geographic and landscape positioning (e.g., light and temperature regimes) control the trophic status of streams, but our findings suggest that complex combinations of spatiotemporally-variable factors, such as snow accumulation and melting, and their role in connecting terrestrial and aquatic ecosystems can lead to substantial within-stream variation in autotrophic or heterotrophic status. [ABSTRACT FROM AUTHOR]

The effects of autotrophic, heterotrophic, and mixotrophic conditions were examined on micro green alga Dunaliella salina (UTEX 200) in terms of cell growth, total chlorophyll concentration, and lipid production. Results revealed a minimum growth rate of microalgae in the heterotrophic condition which is not recommended for D. salina. When the cells were cultured in mixotrophic conditions containing different concentrations of acetate or glucose, in 100 mM acetate or 60 mM glucose, the highest levels of growth rate and lipid production were obtained compared with autotrophic culture; however, the chlorophyll concentration decreased. Moreover, a significant correlation between ROS production and lipid synthesis was observed. When the combined acetate and glucose was added to the culture, no increase in growth rate and lipid synthesis was observed. This might be due to substrate inhibition. In the presence of glucose, the acidification of culture and bleaching occurred. Results indicated that lipid production is not affected by acidified conditions. In general, our results confirmed that mixotrophic culture with 100 mM acetate or 60 mM glucose is the most appropriate culture for D. salina concerning high lipid production as well as high growth rate in the shortest period of time. [ABSTRACT FROM AUTHOR]

Separating ecosystem and soil respiration into autotrophic and heterotrophic component sources is necessary for understanding how the net ecosystem exchange of carbon (C) will respond to current and future changes in climate and vegetation. Here, we use an isotope mass balance method based on radiocarbon to partition respiration sources in three mature black spruce forest stands in Alaska. Radiocarbon (Δ14C) signatures of respired C reflect the age of substrate C and can be used to differentiate source pools within ecosystems. Recently-fixed C that fuels plant or microbial metabolism has Δ14C values close to that of current atmospheric CO2, while C respired from litter and soil organic matter decomposition will reflect the longer residence time of C in plant and soil C pools. Contrary to our expectations, the Δ14C of C respired by recently excised black spruce roots averaged 14% greater than expected for recently fixed photosynthetic products, indicating that some portion of the C fueling root metabolism was derived from C storage pools with turnover times of at least several years. The Δ14C values of C respired by heterotrophs in laboratory incubations of soil organic matter averaged 60% higher than the contemporary atmosphere Δ14CO2, indicating that the major contributors to decomposition are derived from a combination of sources consistent with a mean residence time of up to a decade. Comparing autotrophic and heterotrophic Δ14C end members with measurements of the Δ14C of total soil respiration, we calculated that 47-63% of soil CO2 emissions were derived from heterotrophic respiration across all three sites. Our limited temporal sampling also observed no significant differences in the partitioning of soil respiration in the early season compared with the late season. Future work is needed to address the reasons for high Δ14C values in root respiration and issues of whether this method fully captures the contribution of rhizosphere respiration. © 2005 Blackwell Publishing Ltd.

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Biofloc systems are microbial mature environments that are potentially less conducive disease outbreaks. We hypothesized that the way in which biofloc microbial communities are managed determines the level of disease protection. To investigate such hypothesis, Litopenaeus vannamei post-larvae were cultured for 21 days in biofloc environments created by different water management procedures. Five different types of bioflocs were created: autotrophic bioflocs without probiotics, autotrophic bioflocs with probiotics, heterotrophic bioflocs without probiotics, heterotrophic bioflocs with probiotics, and a flow-through system as a control. Heterotrophic bioflocs were obtained by daily addition of carbon (glucose) at an estimated C/N ratio of 18 throughout the experiment. For autotrophic bioflocs this input of carbon was applied only to start up the system and upon appearance of bioflocs (TSS > 100 mg L−1) and a drop in total ammonium nitrogen concentration below 0.05 mg L−1, carbon dosing was stopped. Bioflocs cultured with addition of probiotics received a 0.5 ppm dose every 48 hours. After 21-d culture period, a 96 h challenge test was performed with a Vibrio parahaemolyticus strain known to cause AHPND. For each biofloc type, this challenge was performed in three different approaches: 1- Shrimp were taken out of their biofloc tanks and challenged by applying new seawater; 2-Shrimp from biofloc tanks were challenged in their respective biofloc suspensions; and 3- Non-experimental shrimp, randomly selected from a recirculation (RAS) system were challenged in the types of biofloc suspensions. Mortality was high when shrimp were challenged in new seawater, independent of treatment. When challenged in their respective biofloc suspensions shrimp survival was the highest in heterotrophic bioflocs with and without probiotic supplementation and the autotrophic bioflocs with probiotics, whereas shrimp survival in autotrophic bioflocs without probiotics was 50%. These results were similar when non-experimental shrimp originating from a RAS system were challenged in these biofloc suspensions. Taken together, results suggest that bioflocs as such can decrease the impact of a Vibrio parahaemolyticus challenge and that this protection depends on the operational parameters of the biofloc system. Moreover, probiotics can be used to complement the protective effect of bioflocs. This information reinforces the importance of microbial community management as a tool to reduce the risk of disease and establish highly biosecure systems. • Two operational parameters of biofloc system were evaluated based on carbon input and probiotic application. • Litopenaeus vannamei post-larvae previously cultured in the two types of bioflocs were challenged with Vibrio parahaemolyticus. • Heterotrophic bioflocs showed high survival with and without probiotic supplementation. • The use of probiotics increased the survival in bioflocs operated in an autotrophic way. [ABSTRACT FROM AUTHOR]

Aims: Long-duration drought can alter ecosystem plant species composition with subsequent effects on carbon cycling. We conducted a rainfall manipulation field experiment to address the question: how does drought-induced vegetation change, specifically shrub encroachment into grasslands, regulate impacts of subsequent drought on soil CO2 efflux (Rs) and its components (autotrophic and heterotrophic, Ra and Rh)? Methods: We conducted a two-year experiment in Inner Mongolia plateau, China, using constructed steppe communities including graminoids, shrubs and their mixture (graminoid + shrub) to test the effects of extreme-duration drought (60-yr return time) on Rs, Rh and Ra. Results: Our results indicated that extreme-duration drought reduced net primary production, with subsequent effects on Rs, Rh and Ra in all three vegetation communities. There was a larger relative decline in Ra (35–54%) than Rs (30–37%) and Rh (28–35%). Interestingly, we found Rs in graminoids is higher than in shrubs under extreme drought. Meanwhile, Rh declines were largest in the shrub community. Although Ra and Rh both decreased rapidly during drought treatment, Rh recovered quickly after the drought, while Ra did not, limiting the Rs recovery. Conclusions: This study suggests that plant species composition regulates several aspects of soil CO2 efflux response to climate extremes. This regulation may be limited by above- and below-ground net primary production depending on soil water availability. The results of this experiment address a critical knowledge gap in the relationship between soil respiration and plant species composition. With shrub encroachment into grasslands, total soil respiration is reduced and can partly offset the effect of reduction in productivity under drought stress. [ABSTRACT FROM AUTHOR]

The objective of this study was to demonstrate the pH effects on growth, survival, water quality, proximal composition of bioflocs and oxidative stress of Nile tilapia in biofloc technology (BFT) system. Twenty‐five fish (3.68 ± 0.93 g) were distributed in each tank (useful vol. 37.5 L), utilizing treatments with pH 8.3, 7.5 and 6.5 at 60 days. During the experiment, the oxidation of total ammonia was similar among the treatments. However, the NO2−‐N oxidation was slower at pH 6.5 (10.1 ± 1.0 mg/L) compared to pH 7.5 (7.0 ± 0.6 mg/L) and 8.3 (7.1 ± 1.5 mg/L). The final weight was higher for pH 7.5 treatment (44.1 ± 0.9 g) compared to pH 8.3 (37.1 ± 3.9 g), while the pH 6.5 (40.4 ± 4.1 g) was like to the other treatments. Moreover, the survival, daily growth rate and the food conversion rate were not affected by treatments. When evaluating physiological and biochemical parameters, no alterations were detected, therefore, indicating that fish have a good health status. Thus, the present study demonstrates that BFT for a Nile tilapia nursery, utilizing pH 6.5–7.5, promotes the best results in terms of growth, net yield and efficiency. [ABSTRACT FROM AUTHOR]

Abstract Mediterranean coastal aquatic ecosystems are heterogeneous systems covering a wide range of hydrological characteristics. Differences in the hydrological pattern determine the nutrient dynamics and microbial community composition of these habitats. We analysed the composition of the microbial community composition and the factors affecting the predominance of autotrophic (A) or heterotrophic (H) microorganisms in 17 coastal water bodies of the Empordà and Baix Ter wetlands (NE Iberian Peninsula) during mid-summer under severe drought conditions. We sampled three types of water bodies with differences in their water residence time: 6 isolated euhaline basins, 8 oligohaline basins and the estuaries of the three rivers that flood into the area. Our aim was to determine if differences exist in the microbial community structure in Mediterranean coastal water bodies with different residence time under conditions of severe drought or, on the other hand, if the lack of flooding during the summer makes isolated, choked and leaky ecosystems more similar. Isolated basins showed higher values than estuaries for temperature, conductivity and the proportion of nutrients in organic forms. Regarding microbial community composition, microphytoplankton (mainly dinoflagellates) dominated in isolated lagoons, while picoplankton dominated in estuaries. We found no significant differences between oligohaline basins and both estuaries and isolated basins for either physical and chemical variables or microbial community composition. Only the proportion between autotrophic and heterotrophic organisms was lower in oligohaline basins than in isolated ones. We conclude that the estuaries of rivers with measurable flow during the summer differ from lagoons long isolated from any surface water input; similarities that we expected to find between leaky and isolated ecosystems under drought conditions arise in only oligohaline waters with intermediate residence times. [ABSTRACT FROM AUTHOR]

In this study we describe a [15N] stable isotopic labeling study of amino acids in Spirodela polyrhiza (common duckweed) grown under three different light and carbon input conditions which represent unique potential metabolic modes. Plants were grown with a light cycle, either with supplemental sucrose (mixotrophic) or without supplemental sucrose (photoautotrophic) and in the dark with supplemental sucrose (heterotrophic). Labeling patterns, pool sizes (both metabolically active and inactive), and kinetics/turnover rates were estimated for 17 of the proteinogenic amino acids. Estimation of these parameters followed several overall trends. First, most amino acids showed plateaus in labeling patterns of

In this work, a kinetic model was proposed to evaluate the simultaneous removal of arsenite (As (III)), chlorate (ClO 3 − ) and nitrate (NO 3 − ) in a granule-based mixotrophic As (III) oxidizing bioreactor for the first time. The autotrophic kinetics related to growth-linked As (III) oxidation and ClO 3 − reduction by As (III) oxidizing bacteria (AsOB) were calibrated and validated based on experimental data from batch test and long-term reactor operation under autotrophic conditions. The heterotrophic kinetics related to non-growth linked As (III) oxidation and ClO 3 − reduction by heterotrophic bacteria (HB) were evaluated based on the batch experimental data under heterotrophic conditions. The existing kinetics related to As (III) oxidation with NO 3 − as the electron acceptor together with heterotrophic denitrification were incorporated into the model framework to assess the bioreactor performance in treatment of the three co-occurring contaminants. The results revealed that under autotrophic conditions As (III) was completely oxidized by AsOB (over 99%), while ClO 3 − and NO 3 − were poorly removed. Under mixotrophic conditions, the simultaneous removal of the three contaminants was achieved with As (III) oxidized mostly by AsOB and ClO 3 − and NO 3 − removed mostly by HB. Both hydraulic retention time (HRT) and influent organic matter (COD) concentration significantly affected the removal efficiency. Above 90% of As (III), ClO 3 − and NO 3 − were removed in the mixotrophic bioreactor under optimal operational conditions of HRT and influent COD. [ABSTRACT FROM AUTHOR]

Abstract: Nutrient limitation assessment is important to understand stream ecosystem functioning. Aquatic primary producers are often limited by nitrogen, phosphorus, or both, as assessed by nutrient diffusing substrata (NDS), a common method for assessing nutrient limitation in streams. But little is known regarding how this method relates to patterns of nutrient uptake at the whole‐stream scale. We combined two techniques to examine nutrient limitation in a tropical stream. First, we conducted two NDS experiments using ammonium, nitrate, and phosphate alone and combined, to determine nutrient limitation at substrata scale over several weeks. Second, we conducted whole‐stream nutrient addition experiments over the course of a year, using nutrients alone and in combination, to test theoretical predictions about uptake characteristics of limiting and nonlimiting nutrients. NDS results consistently indicated N limitation. Ambient uptake length (SW‐amb) suggested either P limitation (shorter SW‐amb for P than N) or colimitation (similar SW‐amb for both nutrients). The relationship between N uptake and concentration when added alone or with P suggested P limitation, colimitation, or neither, depending on the date. We speculate that the different conclusions arise from differences in the spatial and temporal scale assessed by these techniques and the microbial processes involved, and the potential for physical processes influencing whole‐stream uptake estimates. We conclude that nutrient limitation is not as categorical as NDS results often imply, rather habitat, resource, and biotic diversity result in nutrient uptake rates that do not necessarily conform to predictions drawn from fine scale, process‐specific bioassays such as chlorophyll‐a accrual on NDS. [ABSTRACT FROM AUTHOR]

Summary: Tight coupling between below‐ground autotrophic respiration and the availability of recently assimilated carbon (C) has become a paradigm in the ecophysiological literature. Here, we show that stored carbohydrates can decouple respiration from assimilation for prolonged periods by mobilizing reserves from transport roots to absorptive roots. We permanently disrupted the below‐ground transfer of recently assimilated C using stem girdling and root trenching and measured soil CO2 efflux for over 1 yr in longleaf pine (Pinus palustris), a species that has large reserves of stored carbohydrates in roots. Soil CO2 efflux was not influenced by girdling or trenching through the 14‐month observation period. Stored carbohydrate concentrations in absorptive roots were not affected by the disrupted supply of current photosynthate for over 1 yr; however, carbohydrate concentrations in transport roots decreased. Our results indicate that root respiration can be decoupled from recent canopy assimilation and that stored carbohydrates can be mobilized from transport roots to absorptive roots to maintain respiration for over 1 yr. This refines the current paradigm that canopy assimilation and below‐ground respiration are tightly coupled and provides evidence of the mechanism and dynamics responsible for decoupling the above‐ and below‐ground processes. [ABSTRACT FROM AUTHOR]

Effects of treated wastewater (TWW) and fresh water (FW) on autotrophic belowground respiration and respiratory coefficients (Q 10 ) in summer and winter were determined in a commercial citrus orchard. Efflux of CO 2 from soil and the often-ignored CO 2 transported in xylem sap were quantified; the latter derived from sap flux, CO 2 concentration ([CO 2 ]), pH, and temperature. Xylem [CO 2 ] scaled with xylem sap flux, pH and temperature. TWW and summer increased xylem sap pH (by 12% and 19%), soil CO 2 efflux (32% and 65%), and root respired CO 2 (10–15% and 55%) in comparison to FW and winter, respectively. About twice as much CO 2 from the below ground autotrophic portion of respiration moved in xylem sap as compared to that diffused from the roots into the soil, with seasonal variations of about ±10%. Maximum temperature-dependent respiratory coefficients (Q 10 ) were 4.7 for autotrophic root respiration and 3.8 for bulk soil CO 2 efflux, and values varied with water quality and season. Total below ground respiration exceeds that previously reported and is a large part of the tree's carbon balance. Increased respiratory losses caused by poor quality water may explain reduced orchard root growth and overall productivity. [ABSTRACT FROM AUTHOR]

The aim of this work is to evaluate the performance of a submerged membrane bioreactor that operated continuously for 200 days and to assess biomass activity and membrane fouling under various operating conditions. Furthermore, a method for the characterisation of biomass activity is developed based on its separation into various fractions. Respirometry and Activated Sludge Models are used as biological process to identify active biomass and species of activated sludge. However, the equations describing the active biomass are developed. The submerged membrane bioreactor system operated at the solids retention times of 40 and 60 days with organic loading rate of 0.5635 kg/COD/m/day and chemical oxygen demand/nitrogen ratio of 3.5. Activated sludge is generated in a system fed with soluble and easily biodegradable substrate [ethanol/sodium acetate (1:1)], this synthetic wastewater, containing no hardly biodegradable organic or inorganic particulate matter, has led to the generation of a sludge constituted essentially of two fractions: active biomass and cell debris. [ABSTRACT FROM AUTHOR]

Leaves, epilithon, macrophytes, and fine benthic organic material are central ecosystem compartments to food webs and mediate nutrient fluxes in streams. Most estimates of gross primary production (GPP) and ecosystem respiration (ER) are made at a reach scale, averaging across compartments. Thus, there is little information on how individual compartments contribute to and scale up to wholestream estimates across watersheds. We compared estimates of GPP, ER, and nitrogen (N) uptake of individual ecosystem compartments (dm) and stream reaches (~100 m) in three sizes of streams in a preserved Atlantic Rainforest watershed. The smallest stream had dense forest canopy cover, whereas the largest was more open. We measured substratum-specific rates of GPP and ER, as well as ammonium and nitrate 15N uptake in recirculating chambers. We compared these decimeter-scale measurements to whole-stream estimates, using single-station dissolved oxygen (GPP and ER) and pulsed N uptake methods. Epilithon and macrophytes (when present) were the dominant GPP and N uptake compartments in open-canopy sites, and leaves contributed strongly to ER at all sites, even though they covered <3 percent of the stream bottom. Ammonium and nitrate uptake per unit N content varied significantly among substrata and streams. Upscaled inorganic N uptake per unit area was greater when macrophytes were present. Chamber measurements overestimated metabolic rates in the larger streams, but not in the smallest one. The smallest transient storage zone streams were more active than the biggest one, and this influenced the mismatch between whole-stream and chamber nutrient uptake estimates. We conclude that scaling to the whole watershed requires information on location in the watershed (e.g., where canopy cover is dense), rates of individual compartments, and reach-specific hydrodynamic information as influenced by large-scale geomorphic details (i.e., the size and activity of the transient storage zones). [ABSTRACT FROM AUTHOR]

Nitrogen bioremediation in organic insufficient wastewater generally requires an extra carbon source. In this study, nitrate-contaminated wastewater was treated effectively through simultaneous autotrophic and heterotrophic denitrification based on micro-electrolysis carriers (MECs) and retinervus luffae fructus (RLF), respectively. The average nitrate and total nitrogen removal rates reached 96.3 and 94.0% in the MECs/RLF-based autotrophic and heterotrophic denitrification (MRAHD) system without ammonia and nitrite accumulation. The performance of MRAHD was better than that of MEC-based autotrophic denitrification for the wastewater treatment with low carbon nitrogen (COD/N) ratio. Real-time quantitative polymerase chain reaction (qPCR) revealed that the relative abundance of nirS-type denitrifiers attached to MECs (4.9%) and RLF (5.0%) was similar. Illumina sequencing suggested that the dominant genera were Thiobacillus (7.0%) and Denitratisoma (5.7%), which attached to MECs and RLF, respectively. Sulfuritalea was discovered as the dominant genus in the middle of the reactor. The synergistic interaction between autotrophic and heterotrophic denitrifiers played a vital role in the mixotrophic substrate environment. [ABSTRACT FROM AUTHOR]

The metabolic state of the oligotrophic subtropical ocean has long been debated. Net community production (NCP) represents the balance of autotrophic carbon fixation with heterotrophic respiration. Many in vitro NCP estimates based on oxygen incubation methods and the corresponding scaling relationships used to predict the ecosystem metabolic balance have suggested the ocean gyres to be net heterotrophic; however, all in situ NCP methods find net autotrophy. Reconciling net heterotrophy requires significant allochthonous inputs of organic carbon to the oligotrophic gyres to sustain a preponderance of respiration over in situ production. Here we use the first global ecosystem-ocean circulation model that contains representation of the three allochthonous carbon sources to the open ocean, to show that the five oligotrophic gyres exhibit modest net autotrophy throughout the seasonal cycle. Annually integrated rates of NCP vary in the range ~1.5-2.2 mol O2 m−2 yr−1 across the five gyre systems; however, seasonal NCP rates are as low as ~1 ± 0.5 mmol O2 m−2 d−1 for the North Atlantic. Volumetric NCP rates are heterotrophic below the 10% light level; however, they become net autotrophic when integrated over the euphotic zone. Observational uncertainties when measuring these modest autotrophic NCP rates as well as the metabolic diversity encountered across space and time complicate the scaling up of in vitro measurements to the ecosystem scale and may partially explain the previous reports of net heterotrophy. The oligotrophic ocean is autotrophic at present; however, it could shift toward seasonal heterotrophy in the future as rising temperatures stimulate respiration. [ABSTRACT FROM AUTHOR]

Microalgae are a group of organisms, which have a significant potential for industrial applications. These algae contain large amounts of lipids compounds that are beneficial to health, have antibacterial properties, and their extracted oil can be used for biofuel. In this study, microalgae Chlorella vulgaris Beijernick was grown in the culture medium BG-11 containing aluminium (AlCl3) under autotrophic and heterotrophic conditions. In each case, survival and growth, dry weight, internal aluminium content of the sample, antibacterial properties, the content of fatty acids accumulated in the algae and secreted into the culture medium in the logarithmic growth phase were studied. Aluminium significantly increased (P < .05) growth and dry weight in autotrophic treatment compared to the heterotrophic one. Most antibacterial properties were observed in methanol extracts of heterotrophic treatments containing 0.05% glucose. Aluminium also decreased fatty acids accumulation in the algae and increased fatty acids excretion into the culture medium in heterotrophic treatment compared to the autotrophic treatment. Survival of the sample was maintained in heterotrophic conditions and showed growth without lag phase, which is indicative of rapid acclimation of organisms in heterotrophic conditions. It seems that the mentioned characteristics make the single-celled green algae Chlorella vulgaris more efficient in different ways. [ABSTRACT FROM AUTHOR]

Microalgal species are potential resource of both biofuels and high-value metabolites, and their production is growth dependent. Growth parameters can be screened for the selection of novel microalgal species that produce molecules of interest. In this context our review confirms that, autotrophic and heterotrophic organisms have demonstrated a dual potential, namely the ability to produce lipids as well as value-added products (particularly carotenoids) under influence of various physico-chemical stresses on microalgae. Some species of microalgae can synthesize, besides some pigments, very-long-chain polyunsaturated fatty acids (VL-PUFA,>20C) such as docosahexaenoic acid and eicosapentaenoic acid, those have significant applications in food and health. Producing value-added by-products in addition to biofuels, fatty acid methyl esters (FAME), and lipids has the potential to improve microalgae-based biorefineries by employing either the autotrophic or the heterotrophic mode, which could be an offshoot of biotechnology. The review considers the potential of microalgae to produce a range of products and indicates future directions for developing suitable criteria for choosing novel isolates through bioprospecting large gene pool of microalga obtained from various habitats and climatic conditions.

We investigated the composition of the microbial food web in the marshland of Doñana National Park (SW Spain). We analysed factors affecting the predominance of autotrophic (A) or heterotrophic (H) microorganisms in a set of 16 marshland water bodies that differ in their hydrological pattern. Autotrophic organisms were predominant in the Doñana marshland, with autotrophs between 0.3 and 25.3 times higher than heterotrophs in biomass. The variance partitioning analysis using the log A:H biomass ratio ( A/H ) as a response variable revealed that water body spatial position accounted for the largest portion of total variance (16% of unique effects), followed by environmental variables (13%), with a shared variation of 24%. Zooplankton biomass had no significant influence on A/H ratio. The two first axes of RDA analysis were related to soluble reactive phosphate (SRP) and dissolved inorganic nitrogen (DIN) concentrations respectively. Cyanobacteria were predominant in waters with high SRP, while other organisms were distributed in relation to DIN by their size, with small organisms predominating with low DIN and large ones with high DIN. Spatial effects reflect the importance of location with respect to the water source in this marshland, where flooding areas are very much dominated by autotrophs, while confined areas, which are a long way from nutrient sources, have a more balanced abundance of autotrophs and heterotrophs. [ABSTRACT FROM AUTHOR]

Heterotrophic culture of algal cells is now known as an efficient avenue for lipid production. However, the mechanisms involved are not clearly understood, especially when feeding glucose concurrently to autotrophic culture condition. In this work, the time course dynamics of central carbon metabolites of Chlorella protothecoides was studied in autotrophic, heterotrophic and mixotrophic cultures to elucidate the effect of glucose on the cell metabolic reorganization. Results show that assimilated CO 2 mainly goes to the synthesis of upstream carbohydrate-based metabolites under autotrophic condition, while supplementing glucose recalibrates the metabolism towards downstream metabolites and lipids, rather than carbohydrates accumulation. The analysis of the lipid class shows, under glucose supplementation, that cells accumulate neutral lipids as storage rather than as membrane polar lipids, while fatty acid composition changes from polyunsaturated to saturated and monosaturated, which shows improving the quality of biodiesel precursors. The metabolic flux rearrangement seemed being regulated by a high cell energetic state that was maintained by a glucose metabolism. A high initial ATP-to-ADP ratio was observed after adding glucose, suggesting cell energetics as a biomarker of a metabolic shift from starch to lipid accumulation. These findings thus bring novel data on the regulation of carbon flow in microalgal cells, and enhance our understanding of microalgae as a lipid production platform. [ABSTRACT FROM AUTHOR]

Nitrate contaminated water can be effectively treated by simultaneous heterotrophic and autotrophic denitrification (HAD). In the present study, woodchips and elemental sulfur were used as co-electron donors for HAD. It was found that ammonium salts could enhance the denitrifying activity of the Thiobacillus bacteria, which utilize the ammonium that is produced by the dissimilatory nitrate reduction to ammonium (DNRA) in the woodchip-sulfur based heterotrophic and autotrophic denitrification (WSHAD) process. The denitrification performance of the WSHAD process (reaction constants range from 0.05485 h −1 to 0.06637 h −1 ) is better than that of sulfur-based autotrophic denitrification (reaction constants range from 0.01029 h −1 to 0.01379 h −1 ), and the optimized ratio of woodchips to sulfur is 1:1 (w/w). No sulfate accumulation is observed in the WSHAD process and the alkalinity generated in the heterotrophic denitrification can compensate for alkalinity consumption by the sulfur-based autotrophic denitrification. The symbiotic relationship between the autotrophic and the heterotrophic denitrification processes play a vital role in the mixotrophic environment. [ABSTRACT FROM AUTHOR]

Soil carbon in permafrost ecosystems has the potential to become a major positive feedback to climate change if permafrost thaw increases heterotrophic decomposition. However, warming can also stimulate autotrophic production leading to increased ecosystem carbon storage-a negative climate change feedback. Few studies partitioning ecosystem respiration examine decadal warming effects or compare responses among ecosystems. Here, we first examined how 11 years of warming during different seasons affected autotrophic and heterotrophic respiration in a bryophyte-dominated peatland in Abisko, Sweden. We used natural abundance radiocarbon to partition ecosystem respiration into autotrophic respiration, associated with production, and heterotrophic decomposition. Summertime warming decreased the age of carbon respired by the ecosystem due to increased proportional contributions from autotrophic and young soil respiration and decreased proportional contributions from old soil. Summertime warming's large effect was due to not only warmer air temperatures during the growing season, but also to warmer deep soils year-round. Second, we compared ecosystem respiration responses between two contrasting ecosystems, the Abisko peatland and a tussock-dominated tundra in Healy, Alaska. Each ecosystem had two different timescales of warming (<5 years and over a decade). Despite the Abisko peatland having greater ecosystem respiration and larger contributions from heterotrophic respiration than the Healy tundra, both systems responded consistently to short- and long-term warming with increased respiration, increased autotrophic contributions to ecosystem respiration, and increased ratios of autotrophic to heterotrophic respiration. We did not detect an increase in old soil carbon losses with warming at either site. If increased autotrophic respiration is balanced by increased primary production, as is the case in the Healy tundra, warming will not cause these ecosystems to become growing season carbon sources. Warming instead causes a persistent shift from heterotrophic to more autotrophic control of the growing season carbon cycle in these carbon-rich permafrost ecosystems. [ABSTRACT FROM AUTHOR]

A novel and integrated biofilm process – the sulfate reduction (SR) and mixotrophic (MR) sulfideutilization denitrification process (SMSD) – was recently proposed for sulfate treatment and sulfur recovery. The process consisted of two bioreactors: a 5.1 L anaerobic upflow reactor for SR, and a 3.5 L anaerobic upflow reactor for MR desulfurization–denitrification. The experiment was conducted for 370 days to evaluate the performance of SMSD at various sulfate concentrations and hydraulic retention times. The process successfully achieved sulfate, organics and nitrogen compound removal efficiencies of 94.1, 97.7 and 99.1%, respectively. Sulfate was predominantly converted to element sulfur, while nitrate and nitrite were finally converted to nitrogen gas. In SR, with the help of high pH and sponge cubes with various bacteria, 97.5% of sulfide conversion efficiency and 540 mgS/L of sulfide were obtained. In MR, sulfide was removed up to 100% and was partially oxidized to sulfur. The extent of heterotrophic denitrification, which ranged from 35.8 to 59.8%, depended on the categories of electron acceptors. [ABSTRACT FROM AUTHOR]

The paper presents a compilation of various autotrophic and heterotrophic ways of solid-phase denitrification. It covers a complete understanding of various pathways followed during denitrification process. The paper gives a brief review on various governing factors on which the process depends. It focuses mainly on the solid-phase denitrification process, its applicability, efficiency, and disadvantages associated. It presents a critical review on various methodologies associated with denitrification process reported in past years. A comparative study has also been carried out to have a better understanding of advantages and disadvantages of a particular method. We summarize the various organic and inorganic substances and various techniques that have been used for enhancing denitrification process and suggest possible gaps in the research areas whi'ch are worthy of future research. [ABSTRACT FROM AUTHOR]

Excessive uses of fossil fuels and environmental degradation have forced the scientists to find alternative and clean sources of energy. Biofuels are considered as potential alternatives as they are green in nature and are sustainable energy sources. Biodiesel is one of the most commonly used biofuel due to its fuel characteristics. Several feedstocks can be used to produce biodiesel. However, in recent years, microalgae have emerged as potential biodiesel feedstocks. Microalgae offer advantages over conventional feedstocks. Microalgae have ability to fix atmospheric CO 2 and convert it into sugars, which are then converted into fuel after biochemical processing. Microalgae have high growth rate and accumulate lipids up to 70% in their cell body. They demand less water and nutrients for their growth as compared to terrestrial crops. Despite these advantages, the scale-up applications of microalgae biofuels have some technical limitations. In this study, we have reviewed the overall process of biofuels production from microalgae with a particular emphasis on biodiesel. Critical factors affecting the biodiesel production process including species isolation, species selection, cultivation, harvesting, and oil extraction are discussed. Current research, barriers and developments concerned to each step of biodiesel production process are summarized. New ideas are proposed to improve the growth rate, lipid contents and harvesting efficiency of microalgae. To assess the economic viability of microalgae oil, an economical analysis is presented. Future research trends are also discussed. [ABSTRACT FROM AUTHOR]

Chlorella protothecoides, a lipid-producing microalga, was grown heterotrophically and autotrophically in separate reactors, the off-gases exiting the former being used to aerate the latter. Autotrophic biomass productivity with the two-reactor association, 0.0249 g L-1 h-1, was 2.2-fold the value obtained in a control autotrophic culture, aerated with ambient air. Fatty acid productivity was 1.7-fold the control value. C. protothecoides heterotrophic biomass productivity was 0.229 g L-1 h-1. This biomass' fatty acid content was 34.5% (w/w) with a profile suitable for biodiesel production, according to European Standards. The carbon dioxide fixed by the autotrophic biomass was 45 mg CO2 L-1 h-1 in the symbiotic arrangement, 2.1 times the control reactor value. The avoided CO2 atmospheric emission represented 30% of the CO2 produced in the heterotrophic stage, while the released O2 represented 49% of the oxygen demand in that stage. Thus, an increased efficiency in the glucose carbon source use and a higher environmental sustainability were achieved in microalgal biodiesel production using the proposed assembly. [ABSTRACT FROM AUTHOR]

The growth and total lipid content of four green microalgae ( Chlorella sp., Chlorella vulgaris CCAP211/11B, Botryococcus braunii FC124 and Scenedesmus obliquus R8) were investigated under different culture conditions. Among the various carbon sources tested, glucose produced the largest biomass or microalgae grown heterotrophically. It was found that 1 % (w/v) glucose was actively utilized by Chlorella sp., C. vulgaris CCAP211/11B and B. braunii FC124, whereas S. obliquus R8 preferred 2 % (w/v) glucose. No significant difference in biomass production was noted between heterotrophic and mixotrophic (heterotrophic with light illumination/exposure) growth conditions, however, less production was observed for autotrophic cultivation. Total lipid content in cells increased by approximately two-fold under mixotrophic cultivation with respect to heterotrophic and autotrophic cultivation. In addition, light intensity had an impact on microalgal growth and total lipid content. The highest total lipid content was observed at 100 μmol ms for Chlorella sp. (22.5 %) and S. obliquus R8 (23.7 %) and 80 μmol ms for C. vulgaris CCAP211/11B (20.1 %) and B. braunii FC124 (34.9 %). [ABSTRACT FROM AUTHOR]

Microalgae are sustainable feedstock for healthy food and feed, organic drugs, ecological polymers, green chemicals and dyes, biofuels, biofertilizers, and environmental bioremediation technologies. Despite its enormous promises, microalgae cultivation is expensive and thus large-scale production is centred on low volume/high value markets, such as the specialty food and feed, dietary supplements and pharmaceuticals. Large-scale microalgal cultivation is severely limited by the low biomass productivity achieved in current production systems, due to low photosynthetic efficiency. Furthermore, the management of carbon dioxide (CO 2) for microalgal large-scale production is costly and faces technological constraints. The cultivation of microalgae in media supplemented with organic carbon substrates, with or without light, can significantly increase biomass productivities and overcome the technical constraints associated to CO 2 supply. This review collects quantitative data to compare microalgal autotrophic growth and metabolite accumulation with heterotrophic, mixotrophic and photoheterotrophic cultivation modes. Critique hypotheses are proposed to explain the increase in biomass productivity once microalgae are supplied with organic carbon molecules. The main cultivation parameters that could affect biomass accumulation are also analysed. Supplementation of microalgae with organic carbon substrates could be a suitable strategy towards a microalgal economy, despite the constraints and challenges that have to be overcome and that are also analysed. • Large-scale microalgal cultivation is constrained by low biomass productivities. • Photosynthetic efficiency is low in autotrophic production systems. • Large-scale management of carbon dioxide faces economic and technical constraints. • Microalgal biomass productivities can be increased with organic carbon substrates. • Selection of growth model is critical for successful microalgae production system. [ABSTRACT FROM AUTHOR]

Abstract: Metabolic activity of Biological Soil Crusts (BSCs) is principally dependent on moisture availability, but also on temperature and light conditions. Less understood is how BSCs respond to elevated atmospheric CO2. This paper reports laboratory experimental results of elevated atmospheric CO2 on carbon fluxes for cyanobacterial BSCs. The study uses newly designed dynamic gas exchange chambers in which the internal atmosphere was controlled. CO2 flux was monitored during controlled experiments in two phases under simulated rainfall events (2 & 5 mm plus control with no wetting) each lasting 3 days with a dry period in between. Phase 1 subjected crusts to 392 ppm CO2 (representing ambient level) in dry air; in phase 2, the CO2 concentration was 801 ppm. Both phases exhibited significant efflux (respiration) of CO2 immediately after wetting, followed by substantial influx (sequestration) of CO2. Samples subject to 2 mm wetting sequestered an order of magnitude more C under elevated CO2 than at ambient CO2; for samples subject to 5 mm wetting, this increase was threefold. The findings highlight the role of BSCs in future carbon budgets by enabling greater sequestration into dryland soils even under enhanced atmospheric CO2 concentrations, following both light and heavy rainfall events. [Copyright &y& Elsevier]

The investigation aimed to present mathematical models for describing the dynamic behavior of the dissolved organic matter removal and nitrification in the Aerated Submerged Bio-Film (ASBF) for a plug-flow reactor. Based on the experimental data from the batch system of the ASBF pilot plant, mathematical models for the plug-flow reactor were developed to predict dissolved organic matter and ammonia nitrogen removal rates as a function of heterotrophic and autotrophic bacteria populations, dissolved organic matter concentrations, ammonia nitrogen concentrations, dissolved oxygen concentrations, and temperature. The mathematical models for dissolved organic matter and ammonia nitrogen removal in ASBF include two differential equations reflecting heterotrophic and autotrophic bacteria populations, and a number of kinetic parameters. Consequently, the results present a better insight into the dynamics behavior of heterotrophic and autotrophic biofilm growth and their practical application to wastewater for dissolved organic matter and ammonia nitrogen removal process. The mathematical model for ammonia nitrogen and dissolved organic matter removals present good results for the plug-flow reactor. [ABSTRACT FROM AUTHOR]

Improved understanding of the links between aboveground production and allocation of photosynthate to belowground processes and the temporal variation in those links is needed to interpret observations of belowground carbon cycling processes. Here, we show that combining a trenching manipulation with high-frequency soil respiration measurements in a temperate hardwood forest permitted identification of the temporally variable influence of roots on diel and seasonal patterns of soil respiration. The presence of roots in an untrenched plot caused larger daily amplitude and a 2-3 h delay in peak soil CO2 efflux relative to a root-free trenched plot. These effects cannot be explained by differences in soil temperature, and they were significant only when a canopy was present during the growing season. This experiment demonstrated that canopy processes affect soil CO2 efflux rates and patterns at hourly and seasonal time scales, and it provides evidence that root and microbial processes respond differently to environmental factors. [ABSTRACT FROM AUTHOR]

Abstract: Many researchers are interested in the variability of root-respired δ 13CO2 as an indication of linkages between belowground plant respiration and canopy processes. Most studies in this area have, however, relied upon the assumption that temporal variability of total soil respired δ 13CO2 reflects autotrophic soil processes, but in fact few supporting measurements of purely autotrophic soil respiration (partitioned from total soil respiration) are available. Here we use a combination of physical and isotopic partitioning methodologies to track the variability in autotrophic and heterotrophic soil δ 13CO2 at five sites in Eastern Canada during a very dry growing season. Three dimensional modeling of soil isotopic transport dynamics in the static sampling chambers allow us to constrain measurement bias and to eliminate non-steady-state effects as a potential driver of observed variability. We provide experimental results that support a pivotal assumption made in prior interpretations of soil δ 13CO2 dynamics: we observed minimal isotopic variability in soil microbial δ 13CO2 efflux, but appreciable temporal variability in root-respired δ 13CO2 at sites where near drought conditions were observed, suggesting that isotopic discrimination is likely linked to seasonal variations in transpirational demand. [Copyright &y& Elsevier]

This paper describes the association of two bioreactors: one photoautotrophic and the other heterotrophic, connected by the gas phase and allowing an exchange of O and CO gases between them, benefiting from a symbiotic effect. The association of two bioreactors was proposed with the aim of improving the microalgae oil productivity for biodiesel production. The outlet gas flow from the autotrophic (O enriched) bioreactor was used as the inlet gas flow for the heterotrophic bioreactor. In parallel, the outlet gas flow from another heterotrophic (CO enriched) bioreactor was used as the inlet gas flow for the autotrophic bioreactor. Aside from using the air supplied from the auto- and hetero-trophic bioreactors as controls, one mixotrophic bioreactor was also studied and used as a model, for its claimed advantage of CO and organic carbon being simultaneously assimilated. The microalga Chlorella protothecoides was chosen as a model due to its ability to grow under different nutritional modes (auto, hetero, and mixotrophic), and its ability to attain a high biomass productivity and lipid content, suitable for biodiesel production. The comparison between heterotrophic, autotrophic, and mixotrophic Chlorella protothecoides growth for lipid production revealed that heterotrophic growth achieved the highest biomass productivity and lipid content (>22%), and furthermore showed that these lipids had the most suitable fatty acid profile in order to produce high quality biodiesel. Both associations showed a higher biomass productivity (10-20%), when comparing the two separately operated bioreactors (controls) which occurred on the fourth day. A more remarkable result would have been seen if in actuality the two bioreactors had been inter-connected in a closed loop. The biomass productivity gain would have been 30% and the lipid productivity gain would have been 100%, as seen by comparing the productivities of the symbiotic assemblage with the sum of the two bioreactors operating separately (controls). These results show an advantage of the symbiotic bioreactors association towards a cost-effective microalgal biodiesel production. [ABSTRACT FROM AUTHOR]

1. Nutrient spiralling provides a conceptual framework and a whole-system approach to investigate ecosystem responses to environmental changes. We use spiralling metrics to examine how the coupling of nitrogen and phosphorus uptake varies between streams dominated by either heterotrophic (i.e. bacteria-dominated) or autotrophic (algal-dominated) microbial communities. 2. Algae generally exhibit greater capacity to store nutrients than bacteria because of differences in cellular structures. These differences led us to hypothesise that the uptake of N and P in heterotrophic ecosystems should have reduced stoichiometric variation in response to changes in supply N : P compared to autotrophic ecosystems when assimilation dominates nutrient uptake. 3. To test this hypothesis, we used an array of serial nutrient additions in several streams in the South Fork Eel River watershed in Northern California. In one set of experiments, N and P were added alone and simultaneously in separate experiments to two small, heterotrophic streams to assess uptake rates and interactions between nutrient cycles. In a second set of experiments, N and P were added simultaneously at a range of N : P in one heterotrophic and one autotrophic stream to assess differences in uptake responses to changes in supply N : P. 4. Results of these experiments suggest two important conclusions. First, increased N supply significantly shortened P uptake lengths, while P addition had little impact on N uptake in both streams, indicating that uptake of non-limiting nutrients is tightly coupled to the availability of the limiting element. Second, changes in P uptake and uptake ratios ( U : U) with increased supply N : P supported our hypothesis that heterotrophic streams are more homeostatic in their responses to changes in nutrient supply than autotrophic streams, suggesting that physiological controls on nutrient use scale up to influence ecosystem-scale patterns in nutrient cycling. [ABSTRACT FROM AUTHOR]

Abstract: The aim of this paper was to determine the effect of two different membrane bioreactor (MBR) configurations (external/immersed) on sludge structure and microbial activity. Sludge structure was deduced from rheological measurements. The high shear stress induced by the recirculation pump in the external MBR was shown to result in decreasing viscosity due to activated sludge (AS) deflocculation. Besides, soluble microbial products (SMP) release was higher in the external MBR (5mgCOD gMLVSS −1) than in the immersed configuration (2mgCOD gMLVSS −1). Microbial activity was followed from respirometry tests by focusing on the distinction between heterotrophs and autotrophs. An easier autotrophic microbe development was then observed in the immersed MBR compared to the external one. However, the external MBR was shown to allow better heterotrophic microbe development. [ABSTRACT FROM AUTHOR]

Water temperature has received considerable attention as steering factor for the genesis of different types of marine carbonate sediments. However, parameters other than temperature also strongly influence ecosystems and, consequently, the carbonate grain associations in the resulting carbonate rock. Among those factors are biological evolution, water energy, substrate, water chemistry, light penetration, trophic conditions, CO concentrations, and Mg/Ca ratios in the seawater. Increased nutrient levels in warm-water settings, for example, lead to heterotrophic-dominated associations that are characteristic of temperate to cool-water carbonates. Failure to recognize the influence of such environmental factors that shift the grain associations towards heterotrophic communities in low latitudes can lead to misinterpretation of climatic conditions in the past. Modern analogues of low-latitude heterozoan carbonates help to recognize and understand past occurrences of heterozoan warm-water carbonates. Careful analysis of such sediments therefore is required in order to achieve robust reconstructions of past climate. [ABSTRACT FROM AUTHOR]