Su, Jianzhong, Yuan, Jian, Xu, Liangde, Xing, Shilai, Sun, Mengru, Yao, Yinghao, Ma, Yunlong, Chen, Fukun, Jiang, Longda, Li, Kai, Yu, Xiangyi, Xue, Zhengbo, Zhang, Yaru, Fan, Dandan, Zhang, Ji, Liu, Hui, Liu, Xinting, Zhang, Guosi, Wang, Hong, and Zhou, Meng
High myopia (HM) is one of the leading causes of visual impairment and blindness worldwide. Here, we report a whole-exome sequencing (WES) study in 9,613 HM cases and 9,606 controls of Han Chinese ancestry to pinpoint HM-associated risk variants. Single-variant association analysis identified three newly identified -genetic loci associated with HM, including an East Asian ancestry-specific low-frequency variant (rs533280354) in FKBP5. Multi-ancestry meta-analysis with WES data of 2,696 HM cases and 7,186 controls of European ancestry from the UK Biobank discerned a newly identified European ancestry-specific rare variant in FOLH1. Functional experiments revealed a mechanism whereby a single G-to-A transition at rs533280354 disrupted the binding of transcription activator KLF15 to the promoter of FKBP5 , resulting in decreased transcription of FKBP5. Furthermore, burden tests showed a significant excess of rare protein-truncating variants among HM cases involved in retinal blood vessel morphogenesis and neurotransmitter transport. [Display omitted] • Large-scale WES of HM identifies an East-Asian-specific risk variant rs533280354 in FKBP5 • rs533280354 disrupts the binding of KLF15 to FKBP5 and decreases its expression • Burden analysis shows SRPK1 and CHRNA3 associated with HM in Han Chinese population • Rare variants in retinal vascular and neurotransmitter-related pathways are enriched in HM Su et al. report a large-scale whole-exome sequencing study of high myopia (HM). They find several ancestry-specific risk variants and candidate genes associated with HM and demonstrate that a low-frequency variant disrupts the binding site of KLF15, resulting in suppressed FKBP5 expression. [ABSTRACT FROM AUTHOR]