1. Multiple susceptibility loci at chromosome 11q23.3 are associated with plasma triglyceride in East Asians[S]
- Author
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Yun-Mi Song, Soo Ji Lee, Kayoung Lee, Bayasgalan Gombojav, Minjung Kho, and Joohon Sung
- Subjects
Adult ,Male ,0301 basic medicine ,genetic variant ,Candidate gene ,Linkage disequilibrium ,genetic epidemiology ,Adolescent ,Genome-wide association study ,Single-nucleotide polymorphism ,QD415-436 ,Biology ,Polymorphism, Single Nucleotide ,Biochemistry ,Linkage Disequilibrium ,03 medical and health sciences ,Endocrinology ,Asian People ,Republic of Korea ,Humans ,Allele ,Alleles ,Apolipoproteins A ,Genetic Association Studies ,Triglycerides ,Aged ,Aged, 80 and over ,Genetics ,genome-wide association study ,Chromosomes, Human, Pair 11 ,Haplotype ,Membrane Transport Proteins ,RNA-Binding Proteins ,Cell Biology ,Middle Aged ,Twin study ,030104 developmental biology ,Haplotypes ,Genetic epidemiology ,Apolipoprotein A-V ,Female ,Disease Susceptibility ,Patient-Oriented and Epidemiological Research ,Carrier Proteins ,polymorphisms - Abstract
Genetic studies of plasma TG levels have identified associations with multiple candidate loci on chromosome11q23.3, which harbors a number of genes, including BUD13, ZNF259, and APOA5-A4-C3-A1. This study aimed to examine whether these multiple candidate genes on the 11q23.3 regions exert independent effects on TG levels or whether their effects are confounded by linkage disequilibrium (LD). We performed a genome-wide association study and consequent fine-mapping analyses on TG levels in two Korean population-based cohorts: the Korea Association Resource study (n = 8,223) and the Healthy Twin study (n = 1,735). A total of 301 loci reached genome-wide significance level in pooled analysis, including 10 SNPs with weak LD (r(2) < 0.06) clustered on 11q23.3: ApoA5 (rs651821, rs2075291); ZNF259 (rs964184, rs603446); BUD13 (rs11216126); Apoa4 (rs7396851); SIK3 (rs12292858); PCSK7 (rs199890178); PAFAH1B2 (rs12420127), and SIDT2 (rs2269399). When the inter-dependence between alleles was examined using conditional models, five loci on BUD13, ZNF259, and ApoA5 showed possible independent associations. A haplotype analysis using five SNPs revealed both hyper- and hypotriglyceridemic haplotypes, which are relatively common in Koreans (haplotype frequency 0.08-0.22). Our findings suggest the presence of multiple functional loci on 11q23.3, which might exert their effects on plasma TG level independently or through complex interactions between functional loci.
- Published
- 2016