1. MicroRNA expression profiling and target gene analysis in gastric cancer
- Author
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Juan Xie, Chen-Guang Xu, Fenfen Tang, Yan-Ping Liu, Jiangyan Luo, Yaodong Wang, Zhi Long, Guo-Qing Li, and Junda Li
- Subjects
bioinformatics analysis ,microRNA expression microarray ,Microarray ,Down-Regulation ,Observational Study ,medicine.disease_cause ,Real-Time Polymerase Chain Reaction ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Stomach Neoplasms ,microRNA ,Medicine ,Humans ,030212 general & internal medicine ,Regulation of gene expression ,business.industry ,Gene Expression Profiling ,gastric cancer ,Cancer ,qRT-PCR ,General Medicine ,medicine.disease ,Up-Regulation ,Gene expression profiling ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,Cancer research ,business ,Carcinogenesis ,Research Article - Abstract
This study aims to identify differentially expressed microRNAs (miRNAs) in gastric cancer by comparing gastric cancerous tissues with normal tissues, explore the potential roles. The miRNA expression microarray was employed on gastric cancer tissues, and apparently normal para-cancerous tissues from 3 patients undergoing radical surgery were matched. Quantitative RT-PCR was performed on the other 7 patients to validate the findings of the microarray. Furthermore, Gene Ontology (GO) analysis and enrichment analysis of KEGG Pathway were performed for 5 dysregulated candidate miRNAs, including 3 upregulated (miR-31-3p, miR-6736-3p, and miR-147b) and 2 downregulated (miR-3065-5p and miR-3921) miRNAs, in order to determine the role of miRNAs in tumorigenesis and development. Among these miRNAs, 17 miRNAs were found to be upregulated, and 19 miRNAs were found to be downregulated. The dysregulated expression of 5 candidate miRNAs, including miR-31-3p, miR-147b, miR-6736-3p, miR-3065-5p, and miR-3921, were verified by quantitative RT-PCR in the validation set. Among these miRNAs, miR-31-3p, miR-6736-3p, miR-3065-5p, and miR-3921 had 551 target gene intersections. The GO and KEGG Pathway analyses Revealed that miR-31-3p, miR-6736-3p, miR-3065-5p, and miR-3921 may participate in multiple pathophysiological processes, such as foreign substance metabolism and chemical carcinogenesis. The profile of differentially expressed miRNAs was successfully screened, and 4 miRNAs (i.e., miR-31-3p, miR-6736-3p, miR-3065-5p, and miR-3921) appeared to be involved in gastric carcinogenesis. These might serve as promising biomarkers for gastric cancer.
- Published
- 2020