1. HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption.
- Author
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de Goede AL, van Deutekom HW, Vrancken B, Schutten M, Allard SD, van Baalen CA, Osterhaus AD, Thielemans K, Aerts JL, Keşmir C, Lemey P, and Gruters RA
- Subjects
- Anti-Retroviral Agents therapeutic use, CD8-Positive T-Lymphocytes immunology, Dendritic Cells virology, Epitopes, T-Lymphocyte genetics, Evolution, Molecular, HIV Infections virology, HIV-1 classification, HIV-1 isolation & purification, Humans, RNA, Viral blood, RNA, Viral genetics, Sequence Analysis, DNA, nef Gene Products, Human Immunodeficiency Virus genetics, rev Gene Products, Human Immunodeficiency Virus genetics, tat Gene Products, Human Immunodeficiency Virus genetics, Dendritic Cells immunology, HIV Infections therapy, HIV-1 genetics, Immunotherapy methods, nef Gene Products, Human Immunodeficiency Virus immunology, rev Gene Products, Human Immunodeficiency Virus immunology, tat Gene Products, Human Immunodeficiency Virus immunology
- Abstract
Objectives: This study aimed to evaluate HIV sequence evolution in whole genes and in CD8 T-cell epitope regions following immunotherapy and subsequent analytical treatment interruption (ATI). A second objective of this study was to analyze associations between vaccine-specific immune responses and epitope mutation rates., Design: HIV-1-infected patients on combined antiretroviral therapy (cART) were subjected to immunotherapy by the administration of an autologous dendritic cell-based therapeutic vaccine expressing Tat, Rev, and Nef and subsequent ATI., Methods: HIV-1 genes were amplified and sequenced from plasma RNA obtained before initiation of cART as well as during ATI. Control sequences for virus evolution in untreated HIV-1-infected individuals were obtained from the HIV Sequence Database (Los Alamos). CD8 T-cell epitope regions were defined based on literature data and prediction models. HIV-1-specific immune responses were evaluated to analyze their impact on sequence evolution., Results: Viral sequence evolution in the tat, rev, and nef genes of vaccinated patients was similar to that of controls. The number of mutations observed inside and outside CD8 T-cell epitopes was comparable for vaccine-targeted and nontargeted proteins. We found no evidence for an impact of vaccine-induced or enhanced immune responses on the number of mutations inside or outside epitopes., Conclusion: Therapeutic vaccination of HIV-1-infected patients with a dendritic cell-based vaccine targeting Tat, Rev, and Nef did not affect virus evolution at the whole gene level nor at the CD8 T-cell epitope level.
- Published
- 2013
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