1. Whole-Exome Sequencing Enables a Precision Medicine Approach for Kidney Transplant Recipients
- Author
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Weizhen Tan, Shannon Manzi, Asaf Vivante, Thomas M. Kitzler, Michael J. Somers, Eugen Widmeier, Deborah R. Stein, Michelle A. Baum, Hannah Hugo, Shazia Ashraf, Michael A. J. Ferguson, Ankana Daga, Avram Z. Traum, Amelie T. van der Ven, Svjetlana Lovric, Nancy Rodig, Shrikant Mane, Heung Bae Kim, Makiko Nakayama, Jillian K. Warejko, Shirlee Shril, Friedhelm Hildebrandt, Jing Chen, Amar J. Majmundar, Kassaundra Amann, Richard P. Lifton, Leslie Spaneas, Ronen Schneider, Daniela A. Braun, Ghaleb Daouk, Tilman Jobst-Schwan, Nina Mann, Hadas Ityel, Dervla M. Connaughton, and Khashayar Vakili
- Subjects
Graft Rejection ,Male ,medicine.medical_specialty ,Adolescent ,Urinary system ,Risk Assessment ,Severity of Illness Index ,End stage renal disease ,Cohort Studies ,Internal medicine ,Exome Sequencing ,medicine ,Humans ,Genetic Predisposition to Disease ,Genetic Testing ,Precision Medicine ,Renal Insufficiency, Chronic ,Child ,Exome sequencing ,Retrospective Studies ,business.industry ,Graft Survival ,General Medicine ,Precision medicine ,medicine.disease ,Hospitals, Pediatric ,Prognosis ,Kidney Transplantation ,Survival Analysis ,Transplant Recipients ,Transplantation ,Basic Research ,Treatment Outcome ,Nephrology ,Child, Preschool ,Etiology ,Female ,business ,Nephrotic syndrome ,Kidney disease ,Boston - Abstract
Background Whole-exome sequencing (WES) finds a CKD-related mutation in approximately 20% of patients presenting with CKD before 25 years of age. Although provision of a molecular diagnosis could have important implications for clinical management, evidence is lacking on the diagnostic yield and clinical utility of WES for pediatric renal transplant recipients. Methods To determine the diagnostic yield of WES in pediatric kidney transplant recipients, we recruited 104 patients who had received a transplant at Boston Children’s Hospital from 2007 through 2017, performed WES, and analyzed results for likely deleterious variants in approximately 400 genes known to cause CKD. Results By WES, we identified a genetic cause of CKD in 34 out of 104 (32.7%) transplant recipients. The likelihood of detecting a molecular genetic diagnosis was highest for patients with urinary stone disease (three out of three individuals), followed by renal cystic ciliopathies (seven out of nine individuals), steroid-resistant nephrotic syndrome (nine out of 21 individuals), congenital anomalies of the kidney and urinary tract (ten out of 55 individuals), and chronic glomerulonephritis (one out of seven individuals). WES also yielded a molecular diagnosis for four out of nine individuals with ESRD of unknown etiology. The WES-related molecular genetic diagnosis had implications for clinical care for five patients. Conclusions Nearly one third of pediatric renal transplant recipients had a genetic cause of their kidney disease identified by WES. Knowledge of this genetic information can help guide management of both transplant patients and potential living related donors.
- Published
- 2019