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Hydroxylated glycerol dialkyl glycerol tetraethers (OH-GDGTs) have been recently proposed as novel proxies for sea surface temperature (SST) estimation. However, it is still unclear whether these proxies are applicable to the tropical South China Sea (SCS). We assessed the possible impact of extraction methods on the OH-GDGT distribution in marine sediments. A batch of marine sediments from the SCS was subjected to lipid extraction using a modified Bligh/Dyer method (BDM) and an ultrasonic extraction (UE) method, respectively. A systematic difference in the concentration and distribution of OH-GDGTs was observed between the two methods. Sample-by-sample comparison also demonstrated that the BDM had a higher extraction efficiency for OH-GDGTs than UE. The concentration of OH-GDGTs for the BDM dataset was generally higher than that for the UE dataset. The fractional abundance of OH-GDGTs with one cyclopentyl ring was higher for the BDM, resulting in a different OH-GDGT distribution between the BDM and UE datasets. The BDM dataset was thus further used to explore the potential of OH-GDGTs as a proxy for SST in the SCS. OH-2/OHs, the ratio of OH-GDGTs with two cyclopentyl moieties to total OH-GDGTs, exhibited a negative correlation with annual SST when SST was > 25 °C, as opposed to the positive correlation between them when SST was < 25 °C. This suggests that OH-2/OHs holds promise for the reconstruction of SST in the SCS where the SST is close to the warm threshold and proxies, like U K' 37 and TEX 86 H , do not work well. [ABSTRACT FROM AUTHOR]