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Global climate change and anthropogenic oligotrophication are expected to reshape the dynamics of primary production (PP) in aquatic ecosystems; however, few studies have explored their long-term effects. In theory, the PP of phytoplankton in Lake Biwa may decline over decades due to warming, heightened stratification, and anthropogenic oligotrophication. Furthermore, the PP of large phytoplankton, which are inedible to zooplankton, along with biomass-specific productivity (PBc), could decrease. In this study, data from 1976 to 2021 and active fluorometry measurements taken in 2020 and 2021 were evaluated. Quantitatively, the temporal dynamics of mean seasonal PP during 1971-2021 were assessed according to the carbon fixation rate to investigate relationships among environmental factors. Qualitatively, phytoplankton biomass, PP, and PBc were measured in two size fractions [edible (S) or inedible (L) for zooplankton] in 2020 and 2021, and the L:S balance for these three measures was compared between 1992 (low-temperature/high-nutrient conditions) and 2020-2021 (high-temperature/low-nutrient conditions) to assess seasonal dynamics. The results indicated that climate change and anthropogenic oligotrophication over the past 30 years have diminished Lake Biwa's PP since the 1990s, impacting the phenology of PP dynamics. However, the L:S balance in PP and PBc has exhibited minimal change between the data from 1992 and the 2020-2021 period. These findings suggest that, although climate change and oligotrophication may reduce overall PP, they may not markedly alter the inedible/edible phytoplankton balance in terms of PP and PBc. Instead, as total PP declines, the production of small edible phytoplankton may decrease proportionally, potentially affecting trophic transfer efficiency and material cycling in Lake Biwa., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)

A better understanding of abrupt ecosystem changes is needed to improve prediction of future ecosystem states under climate change. Chronological analysis based on long-term monitoring data is an effective way to estimate the frequency and magnitude of abrupt ecosystem changes. In this study, we used abrupt-change detection to differentiate changes of algal community composition in two Japanese lakes and to identify the causes of long-term ecological transitions. Additionally, we focused on finding statistically significant relationships between abrupt changes to aid with factor analysis. To estimate the strengths of driver-response relationships underlying abrupt algal transitions, the timing of the algal transitions was compared to that of abrupt changes in climate and basin characteristics to identify any synchronicities between them. The timing of abrupt algal changes in the two study lakes corresponded most closely to that of heavy runoff events during the past 30-40 years. This strongly suggests that changes in the frequency of extreme events (e.g., heavy rain, prolonged drought) have a greater effect on lake chemistry and community composition than do shifts in the means of climate and basin factors. Our analysis of synchronicity (with a focus on time lags) could provide an easy method to identify better adaptative strategies for future climate change., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)

Understanding the proximate factors and mechanisms driving primary production in manmade reservoirs is crucial because such production can translate into added fish yields that provide people with food and livelihoods. Furthermore, reservoir fish production could potentially compensate for the loss of fish yields due to habitat fragmentation and alterations caused by damming and impoundment. We monitored primary production, identified environmental factors responsible for its variability, and examined the relationship between primary production and fish production in nine large water bodies of the Lower Mekong Basin for 2 years. The estimated primary production ranged from 40 to 302 g C/m 2 /y and was generally greater in the wet season than in the dry season. Linear mixed-effects modelling identified the concentration of dissolved inorganic carbon as a significant fixed-effect variable regulating primary production, after variability due to random and fixed effects of water body and seasonality, respectively, were taken into account. Fish yields marginally increased with increasing primary production across the water bodies, with the estimated energy transfer efficiency ranging from 0.004 to 0.009. Dissolved inorganic carbon was partly determined by the lithological composition of the water body catchment, suggesting that the geographic locations of proposed dams determine the magnitude of primary production and hence future fish production., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.)

This study was conducted to acquire novel insight into differences between bulk (16S rDNA) and metabolically active (16S rRNA) prokaryotic communities in the sediment of a hypereutrophic lake (Japan). In the bulk communities, the class Deltaproteobacteria and the order Methanomicrobiales were dominant among bacteria and methanogens. In the metabolically active communities, the class Alphaproteobacteria and the order Methanomicrobiales and the family Methanosaetaceae were frequently found among bacteria and methanogens. Unlike the bulk communities of prokaryotes, the composition of the metabolically active communities varied remarkably vertically, and their diversities greatly decreased in the lower 20 cm of sediment. The metabolically active prokaryotic community in the sediment core was divided into three sections based on their similarity: 0-6 cm (section 1), 9-18 cm (section 2), and 21-42 cm (section 3). This sectional distribution was consistent with the vertical pattern of the sedimentary stable carbon and nitrogen isotope ratios and oxidation-reduction potential in the porewater. These results suggest that vertical disturbance of the sediment may influence the communities and functions of metabolically active prokaryotes in freshwater lake sediments. Overall, our results indicate that rRNA analysis may be more effective than rDNA analysis for evaluation of relationships between actual microbial processes and material cycling in lake sediments.

We tested the hypothesis that in shallow, eutrophic Lake Kasumigaura, the concentration of particulate phosphorus (PP) is controlled by biogenic P (P in living or dead phytoplankton and bacterial cells), rather than by resuspension of inorganic P in sediment. Increases in wind velocity and turbidity were associated with bottom shear stress exceeding the critical value for the lake (τc=0.15Nm(-2)); this increased turbidity was due to sediment resuspension. However, concentrations of PP; HCl-extractable, reactive P in PP (P-rP); and HCl-extractable, non-reactive P in PP (P-nrP) were not correlated with wind velocity (PP vs. wind velocity: r=0.40, p>0.05). Rather, the P-nrP concentration accounted for approximately 79% of PP, and the concentrations of PP, P-rP, and P-nrP were correlated with the particulate organic carbon (POC) concentration (POC vs. PP: r=0.90, p<0.01; POC vs. P-rP: r=0.82, p<0.01; POC vs. P-nrP: r=0.86, p<0.01). In our (31)P nuclear magnetic resonance spectroscopy results, mononucleotides accounted for the largest proportion among the detected P compound classes. In addition, concentrations of mononucleotides, orthophosphate, and pyrophosphate were significantly higher in samples with high POC concentrations, whereas the DNA-P concentration was not. These results suggest that biogenic P affects PP concentrations more strongly than does sediment resuspension, and the production of biogenic P creates a pool of mononucleotides, a class of easily degradable P, even in shallow, eutrophic Lake Kasumigaura., (Copyright © 2016 Elsevier B.V. All rights reserved.)

We herein designed novel PCR primers for universal detection of the pepA gene, which encodes the representative leucine aminopeptidase gene, and investigated the genetic characteristics and diversity of pepA genes in sediments of hypereutrophic Lake Kasumigaura, Japan. Most of the amino acid sequences deduced from the obtained clones (369 out of 370) were related to PepA-like protein sequences in the M17 family of proteins. The developed primers broadly detected pepA-like clones associated with diverse bacterial phyla-Alpha-, Beta-, Gamma-, and Deltaproteobacteria, Acidobacteria, Actinobacteria, Aquificae, Chlamydiae, Chloroflexi, Cyanobacteria, Firmicutes, Nitrospirae, Planctomycetes, and Spirochetes as well as the archaeal phylum Thaumarchaeota, indicating that prokaryotes in aquatic environments possessing leucine aminopeptidase are more diverse than previously reported. Moreover, prokaryotes related to the obtained pepA-like clones appeared to be r- and K-strategists, which was in contrast to our previous findings showing that the neutral metalloprotease gene clones obtained were related to the r-strategist genus Bacillus. Our results suggest that an unprecedented diversity of prokaryotes with a combination of different proteases participate in sedimentary proteolysis.

We investigated spatial and temporal variations in bacterial community structures as well as the presence of three functional proteolytic enzyme genes in the sediments of a hypereutrophic freshwater lake in order to acquire an insight into dynamic links between bacterial community structures and proteolytic functions. Bacterial communities determined from 16S rRNA gene clone libraries markedly changed bimonthly, rather than vertically in the sediment cores. The phylum Firmicutes dominated in the 4-6 cm deep sediment layer sample after August in 2007, and this correlated with increases in interstitial ammonium concentrations (p < 0.01). The Firmicutes clones were mostly composed of the genus Bacillus. npr genes encoding neutral metalloprotease, an extracellular protease gene, were detected after the phylum Firmicutes became dominant. The deduced Npr protein sequences from the retrieved npr genes also showed that most of the Npr sequences used in this study were closely related to those of the genus Bacillus, with similarities ranging from 61% to 100%. Synchronous temporal occurrences of the 16S rRNA gene and Npr sequences, both from the genus Bacillus, were positively associated with increases in interstitial ammonium concentrations, which may imply that proteolysis by Npr from the genus Bacillus may contribute to the marked increases observed in ammonium concentrations in the sediments. Our results suggest that sedimentary bacteria may play an important role in the biogeochemical nitrogen cycle of freshwater lakes.

Incubation experiments using filtered waters from Lake Kasumigaura were conducted to examine bacterial contribution to a dissolved organic carbon (DOC) pool. Bacterial abundance, bacterial production, concentrations of DOC, total dissolved amino acids (TDAA), and total dissolved neutral sugars (TDNS) were monitored during the experiments. Bacterial production during the first few days was very high (20 to 35 μg C liter(-1) day(-1)), accounting for 40 to 70% of primary production. The total bacterial production accounted for 34 to 55% of the DOC loss during the experiment, indicating high bacterial activities in Lake Kasumigaura. The DOC degradation was only 12 to 15%, whereas the degradation of TDAA and TDNS ranged from 30 to 50%, suggesting the preferential usage of TDAA and TDNS. The contribution of bacterially derived carbon to a DOC pool in Lake Kasumigaura was estimated using d-amino acids as bacterial biomarkers and accounted for 30 to 50% of the lake DOC. These values were much higher than those estimated for the open ocean (20 to 30%). The ratio of bacterially derived carbon to bulk carbon increased slightly with time, suggesting that the bacterially derived carbon is more resistant to microbial degradation than bulk carbon. This is the first study to estimate the bacterial contribution to a DOC pool in freshwater environments. These results indicate that bacteria play even more important roles in carbon cycles in freshwater environments than in open oceans and also suggests that recent increases in recalcitrant DOC in various lakes could be attributed to bacterially derived carbon. The potential differences in bacterial contributions to dissolved organic matter (DOM) between freshwater and marine environments are discussed.

Ecosystems in deep lakes are vulnerable to mixing regime alterations induced by global warming. Detection of mixing regime shifts contributes to a better understanding of the changes that occur in lake ecosystems due to climate change. In the winter of 2018/2019, the monomictic mixing in Lake Biwa, Japan, was partially incomplete. To identify the determining factor, our study reproduced this interruption in monomictic mixing using a realistic three-dimensional lake circulation model and heat budget analysis. The results revealed that weak surface cooling was primarily caused by a decrease in wind speed during the winter rather than by an increase in the air/water temperature, leading to the weak overturn and interruption in monomictic mixing. The results outlined that the mixing regime in Lake Biwa may be shifting from a monomictic to an oligomictic system because of atmospheric stilling or wind speed reductions affected by global warming. [ABSTRACT FROM AUTHOR]

There are few comparative studies of chromophoric dissolved organic matter (CDOM) in humid temperate lakes. In this study, we examined the ultraviolet absorption of water sampled from temperate lakes in Japan and China. A proportional relationship was found between the dissolved organic carbon (DOC) concentration and ultraviolet absorption coefficients in all lake samples, indicating similarities between the two parameters in the temperate lake environments. However, the ratios of absorption coefficient to the DOC concentration in the ranges of < 295 and > 320 nm showed different distributions among the lakes, even within similar DOM component of data sets. We used a two-step ultrafiltration to extract the heterogeneous parts of the CDOM from filtered water. In particular, the low molecular weight fractions in the eutrophic lakes had relative high ratios of absorption coefficient to DOC concentration. These fractions can highlight the CDOM characteristics of lakes in different trophic status. [ABSTRACT FROM AUTHOR]

To clarify horizontal variability and regulation of bacterial production (BP), we investigated BP and environmental variables along three east–west transects (lines 12, 15, and 17) covering inshore/offshore stations in Lake Biwa, Japan, during four seasons using 15N-labeled deoxyadenosine for measuring BP. In winter, surface BP along Line 12 (southern transect) was higher than Lines 15 and 17 (central and northern transects) and reflected the water-temperature distribution. Additionally, any nutrients and dissolved organic carbon did not correlate to BP, suggesting water temperature primarily regulated BP in winter. In spring, surface BP was higher at eastern inshore stations, near large agricultural fields, and was correlated with nutrient concentrations rather than water temperature, suggesting that the limitation shifted to nutrient availability. In summer, surface BP at offshore stations along Lines 15 and 17 was notably lower than the other stations, and the horizontal heterogeneity became largest (maximum to minimum BP ratio = 9.5, compared to 2.8 ~ 4.1 in the other seasons). The BP was also positively correlated to nutrient concentrations, especially phosphorus. Surface BP in autumn also showed higher values at eastern stations as well as spring and positively correlated to phosphorus concentration. Additionally, there was a negative relationship between BP and water temperature, suggesting that bacterial growth was enhanced by groundwater seepage at the eastern stations. The results suggest that the horizontal distribution is characterized by a north–south distribution with a temperature gradient in winter, and allochthonous nutrient loading determines horizontal BP variations in the other seasons in this lake. [ABSTRACT FROM AUTHOR]

Direct measurements of gross primary productivity (GPP) in the water column are essential, but can be spatially and temporally restrictive. Fast repetition rate fluorometry (FRRf) is a bio-optical technique based on chlorophyll a (Chl-a) fluorescence that can estimate the electron transport rate (ETRPSII) at photosystem II (PSII) of phytoplankton in real time. However, the derivation of phytoplankton GPP in carbon units from ETRPSII remains challenging because the electron requirement for carbon fixation (Фe,C), which is mechanistically 4 mol e− mol C−1 or above, can vary depending on multiple factors. In addition, FRRf studies are limited in freshwater lakes where phosphorus limitation and cyanobacterial blooms are common. The goal of the present study is to construct a robust Фe,C model for freshwater ecosystems using simultaneous measurements of ETRPSII by FRRf with multi-excitation wavelengths coupled with a traditional carbon fixation rate by the 13C method. The study was conducted in oligotrophic and mesotrophic parts of Lake Biwa from July 2018 to May 2019. The combination of excitation light at 444, 512 and 633 nm correctly estimated ETRPSII of cyanobacteria. The apparent range of Фe,C in the phytoplankton community was 1.1–31.0 mol e− mol C−1 during the study period. A generalised linear model showed that the best fit including 12 physicochemical and biological factors explained 67% of the variance in Фe,C. Among all factors, water temperature was the most significant, while photosynthetically active radiation intensity was not. This study quantifies the in situ FRRf method in a freshwater ecosystem, discusses core issues in the methodology to calculate Фe,C, and assesses the applicability of the method for lake GPP prediction. [ABSTRACT FROM AUTHOR]

Purpose: Sediment oxygen demand (SOD) measurement currently requires a long preparation time and bulky experimental equipment, which represent major obstacles to conducting SOD measurements. We developed a new SOD measurement method that can be easily conducted in a shorter time than the existing laboratory method. Materials and methods: The undisturbed sediment core was transferred into the custom-made small glass vial (inner diameter 12.8 mm, length 125 mm). The SOD sample was incubated in the dark with or without stirring the overlying water inside the vial. The change in DO concentration was measured using a non-contact fluorescent oxygen sensor, and then the SOD was calculated. For comparison and verification of the new method, SOD was also measured using a large undisturbed sediment core (inner diameter 11 cm, length 50 cm). Results and discussion: The SOD measurements using the new method were positively correlated with the SOD measurements using the large undisturbed sediment core, suggesting that the new method is a feasible alternative to the conventional method. In the new method, many SOD measurements can be taken from a single sediment core sample. This makes it possible to reduce the uncertainty associated with the highly heterogeneous structure of the sediments, and thus the new method has great advantages in obtaining reliable SOD data. Conclusions: A novel high-throughput method for SOD was developed that shortens sample preparation time and improves convenience of measurement. The new method is expected to contribute substantially to the accumulation of SOD monitoring data and to make great progress in elucidating the dynamics of dissolved oxygen in lakes. [ABSTRACT FROM AUTHOR]

The seasonal variation of bacterial production (BP) in a shallow, eutrophic Lake Kasumigaura was clarified from 2012 to 2016. During the studied period, BP fluctuated from 1.9 to 138 μg C L−1 d−1. There were no significant correlations between BP and bacterial abundance in any season, suggesting a strong top‐down regulation on BP throughout the year. On the other hand, BP was also related to bottom‐up regulation factors such as water temperature, phosphorus, and primary production (PP) annually. During winter, BP was positively correlated with chlorophyll a concentration, suggesting that autochthonous substrates were relatively important for BP. Moreover, BP was positively correlated with heterotrophic nanoflagellates, ciliates, and copepods, suggesting higher availability of substrates for BP. In summer, although there was no significant correlation between BP and PP, rainfall amount showed significant negative correlations with both BP and PP, suggesting depressed PP from relatively lower solar irradiance coupled with unfavorable weather conditions that decreased the substrate supply for bacteria. These results suggest that temporal variation of BP was regulated not by allochthonous, but by autochthonous substrates during both the highest (summer) and lowest (winter) productive seasons, even in a shallow, eutrophic lake. PP in autumn was approximately half that of spring due to lower solar irradiance, although water temperatures during both seasons were similar and nutrient concentrations during autumn were higher. On the other hand, BP in autumn was comparable with that in spring, and the bacterial carbon demand (= BP + bacterial respiration; 1.12 ± 0.79 g C m−2 d−1) was comparable to PP (1.16 ± 0.53 g C m−2 d−1), suggesting the relative importance of higher allochthonous substrates relative to other seasons. [ABSTRACT FROM AUTHOR]

In the face of plans for increased construction of dams and reservoirs in the Mekong River Basin, it is critically important to better understand the primary-producer community of phytoplankton, especially the warm-water cyanobacteria. This is because these algae can serve as the primary source of carbon for higher trophic levels, including fishes, but can also form harmful blooms, threatening local fisheries and environmental and human health. We monitored the dynamics of three cyanobacteria—Synechococcus spp., Microcystis aeruginosa, and Dolichospermum spp.—for two years in nine large lakes and reservoirs in the Mekong River Basin. The densities of these algae were largely system-specific such that their abundance was uniquely determined within individual water bodies. However, after accounting for the system-specific effect, we found that cell densities of Synechococcus spp., M. aeruginosa, and Dolichospermum spp. varied in response to changes in photosynthetically active radiation (PAR), total nitrogen, and water level, respectively. Because both PAR and water level tend to fluctuate concordantly over a wide geographic area, Synechococcus spp., and to a lesser extent Dolichospermum spp., varied synchronously among the water bodies. Sustaining the production of pico-sized primary producers while preventing harmful algal blooms will be a key management goal for the proposed reservoirs in the Mekong Basin. [ABSTRACT FROM AUTHOR]

Light environment variability was investigated in the two Japanese lakes Biwa and Kasumigaura, which offer a broad range of optical conditions in the water bodies due to their diverse morphometries and limnological characteristics. To elucidate their light environments, Secchi depths (SDs) were related to long-term monitored datasets of concentrations of optically active substances (OASs) using two approaches based on statistical and mechanistic models. A good estimate for the nonphytoplanktonic suspended solids (NPSS) concentration gained using a monthly factor δ (which represents the phytoplanktonic portion in total suspended solids) from a long-term analysis was utilized to develop robust models. Using the mechanistic model, the contribution of each OAS to the SD can be understood and investigated in more detail than possible with a statistical approach, but the statistical model yields better results in terms of SD prediction. Based on the results of an analysis of the contribution of each OAS to the SD, it was clear that NPSS was the component that exerted the most influence on the light environments in the two lakes; in this respect, this study agrees with other studies that show the importance of suspended inorganic particles as the main contributor to the SD in inland waters. Using ANOVA, we analyzed how specific inherent optical properties may have changed spatially and temporally, and the results indicated that the temporal (monthly) effect was primarily responsible for the loss of accuracy in the models. In addition, the ANOVA analysis suggested that grouping the data improved the predictive performances of the statistical models. Finally, we concluded that combining the two models yields the most reliable results in terms of SD prediction and determining the contribution of each OAS to the SD at present. [ABSTRACT FROM AUTHOR]

Microcystis aeruginosa causes surface blooms in eutrophic lakes in the tropical and temperate zones. We investigated which factors suppressed blooms of M. aeruginosa in Lake Kasumigaura, a shallow hypereutrophic lake in the temperate zone of Japan, from 1999 to 2007 by quantifying the 16S rRNA gene of M. aeruginosa using real-time PCR. These results showed that M. aeruginosa existed in the lake water throughout the year. The abundance of M. aeruginosa usually increased from March to July and decreased from August to February. The factors determining the maximum density of the year were the overwintering population and the growth rate in summer (in June and July). The overwintering population was affected by abundance during the previous summer. The growth rates of M. aeruginosa in summer were correlated significantly with the extinction coefficient and mean daily photosynthetically active radiation irradiance. The mean daily irradiance in summer from 1999 to 2007 was 77% of that from 1983 to 1986, when blooms of M. aeruginosa occurred. Therefore, the most important factor controlling the growth of M. aeruginosa in Lake Kasumigaura after 1999 appears to be the amount of light supplied to the water column. [ABSTRACT FROM AUTHOR]

Abstract: Sediment core samples from the center of Lake Kasumigaura, Japan, were collected from 1979 to 2007 at intervals of 1month to 5yr. We evaluated the degree of modification in N isotope composition during sedimentation and diagenesis. We estimated the degree of isotope discrimination during diagenesis by comparing historical changes in N isotope composition of the surface sediment (top 2cm) against the vertical profile of the isotope composition of sediment core samples (15cm depth). The degree of 15N enrichment during sedimentation appeared to be significant under the preferential N decomposition that occurred in the periods with low C/N ratio values of suspended particulate organic matter. We documented 15N depletion in sediment deeper than approximately 3cm during diagenesis. The contrasting directions of N isotope discrimination during sedimentation and diagenesis suggest changing mechanisms of isotopic shift across an oxidation–reduction boundary. [Copyright &y& Elsevier]

Dissolved organic matter (DOM) in water samples from the shallow eutrophic Lake Kasumigaura, the second largest lake in Japan, was fractionated and characterized by using resin adsorbents into 5 classes: aquatic humic substances (AHS), hydrophobic neutrals, hydrophilic acids (HiA), bases (BaS) and hydrophilic neutrals (HiN). Subsequently, the trihalomethane formation potential (THMFP), ultraviolet absorbance to dissolved organic carbon (UV:DOC) ratio, and molecular size distribution of the DOM, AHS and hydrophilic fractions (HiF) (HiF=HiA+BaS+HiN) were examined. The THMFP of HiF, normalized on a DOC basis, was found to be comparable to that of AHS (0.176 μmol THM mg C−1 vs. 0.195 μmol THM mg C−1, respectively). The importance of HiF over AHS as a THM precursor became more pronounced when THMFP was evaluated in terms of concentration. In this case, the THMFP of HiF was much greater than that of AHS (0.374 μmol THM l−1 vs. 0.229 μmol THM l−1, respectively). Molecular size distributions all exhibited a narrow size range and relatively low molecular weights. The weight-averaged molecular weights of DOM, AHS and HiF were 780, 957 and 606 g mol−1, respectively. [Copyright &y& Elsevier]