1. Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis
- Author
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James A B Floyd, Katherine I. Morley, Leena Peltonen, Darren B. Day, Elizabeth F Wheater, Heather J. Cordell, Carl A. Anderson, Richard Sandford, Peter T. Donaldson, David Jones, James Neuberger, Agnes Muriithi, So-Youn Shin, Graeme J.M. Alexander, Samantha J. Ducker, Christopher J Hammond, Christopher S. Franklin, Muhammad F. Dawwas, George F. Mells, and Michael A. Heneghan
- Subjects
Male ,Receptors, CXCR5 ,Linkage disequilibrium ,Death Domain Receptor Signaling Adaptor Proteins ,Cirrhosis ,Monosaccharide Transport Proteins ,Locus (genetics) ,Genome-wide association study ,Biology ,Adaptive Immunity ,Genome ,Polymorphism, Single Nucleotide ,Article ,Linkage Disequilibrium ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Primary biliary cirrhosis ,Risk Factors ,Databases, Genetic ,Genetics ,medicine ,Guanine Nucleotide Exchange Factors ,Humans ,Genetic Predisposition to Disease ,Lectins, C-Type ,030304 developmental biology ,0303 health sciences ,Receptors, Interleukin-7 ,Liver Cirrhosis, Biliary ,Case-control study ,NF-kappa B p50 Subunit ,STAT4 Transcription Factor ,medicine.disease ,Immunity, Innate ,3. Good health ,Receptors, Tumor Necrosis Factor, Type I ,Case-Control Studies ,Immunology ,Susceptibility locus ,B7-1 Antigen ,030211 gastroenterology & hepatology ,Female ,Genome-Wide Association Study - Abstract
In addition to the HLA locus, six genetic risk factors for primary biliary cirrhosis (PBC) have been identified in recent genome-wide association studies (GWAS). To identify additional loci, we carried out a GWAS using 1,840 cases from the UK PBC Consortium and 5,163 UK population controls as part of the Wellcome Trust Case Control Consortium 3 (WTCCC3). We followed up 28 loci in an additional UK cohort of 620 PBC cases and 2,514 population controls. We identified 12 new susceptibility loci (at a genome-wide significance level of P5 × 10⁻⁸) and replicated all previously associated loci. We identified three further new loci in a meta-analysis of data from our study and previously published GWAS results. New candidate genes include STAT4, DENND1B, CD80, IL7R, CXCR5, TNFRSF1A, CLEC16A and NFKB1. This study has considerably expanded our knowledge of the genetic architecture of PBC.
- Published
- 2011