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Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (Monachus monachus), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Cabo Blanco (Western Sahara/Mauritania), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate into four populations. This structure is probably the consequence of recent drift, combined with long-term isolation by distance (R2 = 0.7), resulting from prevailing short-distance (less than 500 km) and infrequent long-distance dispersal (less than 1500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled with the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals. [ABSTRACT FROM AUTHOR]

It is commonly assumed that the resolution of the isotopic niche of consumers can be improved with a larger number of chemical elements, but this is only true if steep environmental gradients exist at the appropriate spatial scale. Off Mauritania, the δ13C value is a useful proxy to understand the distribution of marine mammals along the inshore-offshore gradient, and the δ15N value to assess their trophic position. Here, the incorporation of δ18O values as an independent habitat tracer largely improved the resolution of the isotopic niche, because the δ18O gradients, mostly reflecting marked salinity gradients, spanned over broad spatial scales when compared to the home range of marine mammals. On the contrary, δ34S values did not improve much the resolution of the isotopic niche at the species level, although it was useful to identify individuals relying on food webs associated with anoxic sediments, such as seagrass meadows. This is because the δ34S gradient in the area develops over a small spatial scale, compared to the home range of the considered species. This study provides new insights into the use of a muti-element approach in isotopic ecology, and improves the understanding of habitat partitioning between the considered marine mammal species off North Western Africa. [Display omitted] • δ18O and δ34S complement δ13C as habitat tracers, but at different scales. • δ18O is useful to identify species using water mases of contrasting salinity. • δ34S is useful to identify individuals within a species relying on seagrass meadows. • Sighting and stranding reports validate inferences made from stable isotope ratios. • The gradient of the isotopic tracer should encompass the home ranges of the species. [ABSTRACT FROM AUTHOR]