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Coastal marine environments are subject to a variety of anthropogenic pressures that can negatively impact habitats and the biodiversity they harbor. Conservation actions such as marine protected areas, marine reserves, and other effective area-based conservation measures, are pivotal tools for protecting coastal biodiversity. However, to be effective, conservation area networks must be planned through a systematic conservation planning (SCP) approach. Recently, such approaches have begun to orient their goals toward the conservation of different biodiversity facets and to integrate different types of data. In this review, we illustrate how genetic data and molecular techniques can bring useful knowledge for SCP approaches that are both more comprehensive (sampling the full range of biodiversity) and more adequate (ensuring the long-term persistence of biodiversity). With an emphasis on coastal organisms and habitats, we focus on phylogenetic analysis, the estimation of neutral and adaptive intraspecific genetic diversity at different spatial levels (alpha, beta, and gamma), the study of connectivity and dispersal, and the information obtainable from environmental DNA techniques. For each of these applications, we discuss the benefits of its integration into SCP for coastal systems, its strengths and weaknesses, and the aspects yet to be developed. [ABSTRACT FROM AUTHOR]

Abstract: Current methods in conservation planning for promoting the persistence of biodiversity typically focus on either representing species geographic distributions or maintaining connectivity between reserves, but rarely both, and take a focal species, rather than a multispecies, approach. Here, we link prioritization methods with population models to explore the impact of integrating both representation and connectivity into conservation planning for species persistence. Using data on 288 Mediterranean fish species with varying conservation requirements, we show that: (1) considering both representation and connectivity objectives provides the best strategy for enhanced biodiversity persistence and (2) connectivity objectives were fundamental to enhancing persistence of small‐ranged species, which are most in need of conservation, while the representation objective benefited only wide‐ranging species. Our approach provides a more comprehensive appraisal of planning applications than approaches focusing on either representation or connectivity, and will hopefully contribute to build more effective reserve networks for the persistence of biodiversity. [ABSTRACT FROM AUTHOR]

Aim To study the combined effects of climate change on connectivity between marine protected areas ( MPAs) and larval supply to the continental shelf. Location The Mediterranean Sea, where sea surface temperatures are expected to strongly increase by the end of the 21st century, represents an archetypal situation with a dense MPA network but resource overexploitation outside. Methods Using an individual-based mechanistic model of larval transport, forced with an emission-driven regional climate change scenario for the Mediterranean Sea, we explored the combined effects of changes in hydrodynamics, adult reproductive timing and larval dispersal on the connectivity among MPAs and their ability to seed fished areas with larvae. Results We show that, over the period 1970-2099, larval dispersal distances would decrease by 10%, the continental shelf area seeded with larvae would decrease by 3% and the larval retention fraction would increase by 5%, resulting in higher concentration of larvae in smaller areas of the continental shelf. However, connectance within the MPA network would increase by 5% as more northern MPAs would become suitable for reproduction with increasing temperatures. We also show that the effects of changes in adult reproductive timing and larval dispersal on connectivity patterns are additive. Main conclusions Climate change will influence connectivity and the effectiveness of MPA networks, and should receive more attention in future conservation planning and large-scale population dynamics. [ABSTRACT FROM AUTHOR]

ABSTRACT Connectivity is a crucial process underpinning the persistence, recovery, and productivity of marine ecosystems. The Convention on Biological Diversity, through the Aichi Target 11, has set the ambitious objective of implementing a 'well connected system of protected areas' by 2020., This paper identifies eight challenges toward the integration of connectivity into MPA network management and planning. A summary table lists the main recommendations in terms of method, tool, advice, or action to address each of these challenges. Authors belong to a science-management continuum including researchers, international NGO officers, and national MPA agency members., Three knowledge challenges are addressed: selecting and integrating connectivity measurement metrics; assessing the accuracy and uncertainty of connectivity measurements; and communicating and visualizing connectivity measurements., Three management challenges are described: integrating connectivity into the planning and management of MPA networks; setting quantitative connectivity targets; and implementing connectivity-based management across scales and marine jurisdictions., Finally, two paths toward a better integration of connectivity science with MPA management are proposed: setting management-driven priorities for connectivity research, bridging connectivity science, and MPA network management., There is no single method to integrate connectivity into marine spatial planning. Rather, an array of methods can be assembled according to the MPA network objectives, budget, available skills, data, and timeframe., Overall, setting up 'boundary organizations' should be promoted to organize complex cross-disciplinary, cross-sectoral and cross-jurisdiction interactions that are needed between scientists, managers, stakeholders and decision-makers to make informed decision regarding connectivity-based MPA planning and management., Copyright © 2014 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

Marine protected areas (MPAs) are major tools to protect biodiversity and sustain fisheries. For species with a sedentary adult phase and a dispersive larval phase, the effectiveness of MPA networks for population persistence depends on connectivity through larval dispersal. However, connectivity patterns between MPAs remain largely unknown at large spatial scales. Here, we used a biophysical model to evaluate connectivity between MPAs in the Mediterranean Sea, a region of extremely rich biodiversity that is currently protected by a system of approximately a hundred MPAs. The model was parameterized according to the dispersal capacity of the dusky grouper Epinephelus marginatus, an archetypal conservation-dependent species, with high economic importance and emblematic in the Mediterranean. Using various connectivity metrics and graph theory, we showed that Mediterranean MPAs are far from constituting a true, well-connected network. On average, each MPA was directly connected to four others and MPAs were clustered into several groups. Two MPAs (one in the Balearic Islands and one in Sardinia) emerged as crucial nodes for ensuring multi-generational connectivity. The high heterogeneity of MPA distribution, with low density in the South-Eastern Mediterranean, coupled with a mean dispersal distance of 120 km, leaves about 20% of the continental shelf without any larval supply. This low connectivity, here demonstrated for a major Mediterranean species, poses new challenges for the creation of a future Mediterranean network of well-connected MPAs providing recruitment to the whole continental shelf. This issue is even more critical given that the expected reduction of pelagic larval duration following sea temperature rise will likely decrease connectivity even more. [ABSTRACT FROM AUTHOR]

Marine protected areas (MPAs) are major tools to protect biodiversity and sustain fisheries. For species with a sedentary adult phase and a dispersive larval phase, the effectiveness of MPA networks for population persistence depends on connectivity through larval dispersal. However, connectivity patterns between MPAs remain largely unknown at large spatial scales. Here, we used a biophysical model to evaluate connectivity between MPAs in the Mediterranean Sea, a region of extremely rich biodiversity that is currently protected by a system of approximately a hundred MPAs. The model was parameterized according to the dispersal capacity of the dusky grouper Epinephelus marginatus, an archetypal conservation-dependent species, with high economic importance and emblematic in the Mediterranean. Using various connectivity metrics and graph theory, we showed that Mediterranean MPAs are far from constituting a true, well-connected network. On average, each MPA was directly connected to four others and MPAs were clustered into several groups. Two MPAs (one in the Balearic Islands and one in Sardinia) emerged as crucial nodes for ensuring multi-generational connectivity. The high heterogeneity of MPA distribution, with low density in the South-Eastern Mediterranean, coupled with a mean dispersal distance of 120 km, leaves about 20% of the continental shelf without any larval supply. This low connectivity, here demonstrated for a major Mediterranean species, poses new challenges for the creation of a future Mediterranean network of well-connected MPAs providing recruitment to the whole continental shelf. This issue is even more critical given that the expected reduction of pelagic larval duration following sea temperature rise will likely decrease connectivity even more. [ABSTRACT FROM AUTHOR]

Long-distance (>40-km) dispersal from marine reserves is poorly documented; yet, it can provide essential benefits such as seeding fished areas or connecting marine reserves into networks. From a meta-analysis, we suggest that the spatial scale of marine connectivity is underestimated due to the limited geographic extent of sampling designs. We also found that the largest marine reserves (>1000 km2) are the most isolated. These findings have important implications for the assessment of evolutionary, ecological, and socio-economic long-distance benefits of marine reserves. We conclude that existing methods to infer dispersal should consider the up-to-date genomic advances and also expand the spatial scale of sampling designs. Incorporating long-distance connectivity in conservation planning will contribute to increase the benefits of marine reserve networks. Highlights Marine dispersal distance estimates are limited by the spatial scale of sampling design and therefore biased downwards. Active larval behavior, oceanographic eddies and fronts, tsunamis, marine debris, and translocations are potentially important, but overlooked, dispersal vectors over long distances. The largest marine reserves have the highest potential for massive and long-distance benefits but are the most isolated reserves. Long-distance dispersal has important consequences for the design of marine reserve networks. [ABSTRACT FROM AUTHOR]

Understanding larval connectivity patterns is critical for marine spatial planning, particularly for designing marine protected areas and managing fisheries. Patterns of larval dispersal and connectivity can be inferred from numerical transport models at large spatial and temporal scales. We assess model-based connectivity patterns between seamounts of the Southwestern Indian Ocean (SWIO) and the coastal ecosystems of Mauritius, La Réunion, Madagascar, Mozambique and South Africa, with emphasis on three shallow seamounts (La Pérouse [LP], MAD-Ridge [MR] and Walters Shoal [WS]). Using drifter trajectory and a Lagrangian model of ichthyoplankton dispersal, we show that larvae can undertake very long dispersion, with larval distances increasing with pelagic larval duration (PLD). There are three groups of greater connectivity: the region between the eastern coast of Madagascar, Mauritius and La Réunion islands; the seamounts of the South West Indian Ridge; and the pair formed by WS and a nearby un-named seamount. Connectivity between these three groups is evident only for the longest PLD examined (360 d). Connectivity from seamounts to coastal ecosystems is weak, with a maximum of 2% of larvae originating from seamounts reaching coastal ecosystems. Local retention at the three focal seamounts (LP, MR and WS) peaks at about 11% for the shortest PLD considered (15 d) at the most retentive seamount (WS) and decreases sharply with increasing PLD. Information on PLD and age of larvae collected at MR and LP are used to assess their putative origin. These larvae are likely self-recruits but it is also plausible that they immigrate from nearby coastal sites, i.e. the southern coast of Madagascar for MR and the islands of La Réunion and Mauritius for LP. [ABSTRACT FROM AUTHOR]