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\emph{Proto-exact categories}, introduced by Dyckerhoff and Kapranov, are a generalization of Quillen exact categories which provide a framework for defining algebraic K-theory and Hall algebras in a \emph{non-additive} setting. This formalism is well-suited to the study of categories whose objects have strong combinatorial flavor. In this paper, we show that the categories of modules over semirings and hyperrings - algebraic structures which have gained prominence in tropical geometry - carry proto-exact structures. In the first part, we prove that the category of modules over a semiring is equipped with a proto-exact structure; modules over an idempotent semiring have a strong connection to matroids. We also prove that the category of algebraic lattices $\mathcal{L}$ has a proto-exact structure, and furthermore that the subcategory of $\mathcal{L}$ consisting of finite lattices is equivalent to the category of finite $\mathbb{B}$-modules as proto-exact categories, where $\mathbb{B}$ is the \emph{Boolean semifield}. We also discuss some relations between $\mathcal{L}$ and geometric lattices (simple matroids) from this perspective. In the second part, we prove that the category of modules over a hyperring has a proto-exact structure. In the case of finite modules over the \emph{Krasner hyperfield} $\mathbb{K}$, a well-known relation between finite $\mathbb{K}$-modules and finite incidence geometries yields a combinatorial interpretation of exact sequences.

We associate to a projective $n$-dimensional toric variety $X_{\Delta}$ a pair of co-commutative (but generally non-commutative) Hopf algebras $H^{\alpha}_X, H^{T}_X$. These arise as Hall algebras of certain categories $\Coh^{\alpha}(X), \Coh^T(X)$ of coherent sheaves on $X_{\Delta}$ viewed as a monoid scheme - i.e. a scheme obtained by gluing together spectra of commutative monoids rather than rings. When $X_{\Delta}$ is smooth, the category $\Coh^T(X)$ has an explicit combinatorial description as sheaves whose restriction to each $\mathbb{A}^n$ corresponding to a maximal cone $\sigma \in \Delta$ is determined by an $n$-dimensional generalized skew shape. The (non-additive) categories $\Coh^{\alpha}(X), \Coh^T(X)$ are treated via the formalism of proto-exact/proto-abelian categories developed by Dyckerhoff-Kapranov. The Hall algebras $H^{\alpha}_X, H^{T}_X$ are graded and connected, and so enveloping algebras $H^{\alpha}_X \simeq U(\n^{\alpha}_X)$, $H^{T}_X \simeq U(\n^{T}_X)$, where the Lie algebras $\n^{\alpha}_X, \n^{T}_X$ are spanned by the indecomposable coherent sheaves in their respective categories. We explicitly work out several examples, and in some cases are able to relate $\n^T_X$ to known Lie algebras. In particular, when $X = \mathbb{P}^1$, $\n^T_X$ is isomorphic to a non-standard Borel in $\mathfrak{gl}_2 [t,t^{-1}]$. When $X$ is the second infinitesimal neighborhood of the origin inside $\mathbb{A}^2$, $\n^T_X$ is isomorphic to a subalgebra of $\mathfrak{gl}_2[t]$. We also consider the case $X=\mathbb{P}^2$, where we give a basis for $\n^T_X$ by describing all indecomposable sheaves in $\Coh^T(X)$., Comment: Title changed from earlier version "Toric Hall algebras and infinite-dimensional Lie algebras". Significant changes in approach to T-sheaves (their definition etc.)

We study commutative ring structures on the integral span of rooted trees and $n$-dimensional skew shapes. The multiplication in these rings arises from the smash product operation on monoid representations in pointed sets. We interpret these as Grothendieck rings of indecomposable monoid representations over $\fun$ - the "field" of one element. We also study the base-change homomorphism from $\mt$-modules to $k[t]$-modules for a field $k$ containing all roots of unity, and interpret the result in terms of Jordan decompositions of adjacency matrices of certain graphs., Comment: arXiv admin note: text overlap with arXiv:1706.03900

This paper examines the category $\mathbf{Mat}_{\bullet}$ of pointed matroids and strong maps from the point of view of Hall algebras. We show that $\mathbf{Mat}_{\bullet}$ has the structure of a finitary proto-exact category - a non-additive generalization of exact category due to Dyckerhoff-Kapranov. We define the algebraic K-theory $K_* (\mathbf{Mat}_{\bullet})$ of $\mathbf{Mat}_{\bullet}$ via the Waldhausen construction, and show that it is non-trivial, by exhibiting injections $$\pi^s_n (\mathbb{S}) \hookrightarrow K_n (\mathbf{Mat}_{\bullet})$$ from the stable homotopy groups of spheres for all $n$. Finally, we show that the Hall algebra of $\mathbf{Mat}_{\bullet}$ is a Hopf algebra dual to Schmitt's matroid-minor Hopf algebra., Comment: 29 pages

Recently, M.~Baker and N.~Bowler introduced the notion of matroids over hyperfields as a unifying theory of various generalizations of matroids. In this paper we generalize the notion of minors and direct sums from ordinary matroids to matroids over hyperfields. Using this we generalize the classical construction of matroid-minor Hopf algebras to the case of matroids over hyperfields., Comment: 25 pages

We study ideals in Hall algebras of monoid representations on pointed sets corresponding to certain conditions on the representations. These conditions include the property that the monoid act via partial permutations, that the representation possess a compatible grading, and conditions on the support of the module. Quotients by these ideals lead to combinatorial Hopf algebras which can be interpreted as Hall algebras of certain sub-categories of modules. In the case of the free commutative monoid on n generators, we obtain a co-commutative Hopf algebra structure on $n$-dimensional skew shapes, whose underlying associative product amounts to a "stacking" operation on the skew shapes. The primitive elements of this Hopf algebra correspond to connected skew shapes, and form a graded Lie algebra by anti-symmetrizing the associative product. We interpret this Hopf algebra as the Hall algebra of a certain category of coherent torsion sheaves on $\mathbb{A}_{/ \mathbb{F}_1}^n$ supported at the origin, where $\mathbb{F}_1$ denotes the field of one element. This Hopf algebra may be viewed as an $n$-dimensional generalization of the Hopf algebra of symmetric functions, which corresponds to the case $n=1$.

Let $\A$ be a finitely generated semigroup with 0. An $\A$-module over $\fun$ (also called an $\A$--set), is a pointed set $(M,*)$ together with an action of $\A$. We define and study the Hall algebra $\H_{\A}$ of the category $\C_{\A}$ of finite $\A$--modules. $\H_{\A}$ is shown to be the universal enveloping algebra of a Lie algebra $\n_{\A}$, called the \emph{Hall Lie algebra} of $\C_{\A}$. In the case of the $\fm$ - the free monoid on one generator $\fm$, the Hall algebra (or more precisely the Hall algebra of the subcategory of nilpotent $\fm$-modules) is isomorphic to Kreimer's Hopf algebra of rooted forests. This perspective allows us to define two new commutative operations on rooted forests. We also consider the examples when $\A$ is a quotient of $\fm$ by a congruence, and the monoid $G \cup \{0\}$ for a finite group $G$.

The incidence category $\C_{\F}$ of a family $\F$ of colored posets closed under disjoint unions and the operation of taking convex sub-posets was introduced by the author in \cite{Sz}, where the Ringel-Hall algebra $\H_{\F}$ of $\C_{\F}$ was also defined. We show that if the Hasse diagrams underlying $\F$ are rooted trees, then the subspace $\n_{\F}$ of primitive elements of $\H_{\F}$ carries a pre-Lie structure, defined over $\mathbb{Z}$, and with positive structure constants. We give several examples of $\n_{\F}$, including the nilpotent subalgebras of $\mathfrak{sl}_n$, $L \mathfrak{gl}_n$, and several others.

We define and study the category $\RepQ$ of representations of a quiver in $\VFun$ - the category of vector spaces "over $\Fun$". $\RepQ$ is an $\Fun$-linear category possessing kernels, co-kernels, and direct sums. Moreover, $\RepQ$ satisfies analogues of the Jordan-H\"older and Krull-Schmidt theorems. We are thus able to define the Hall algebra $\HQ$ of $\RepQ$, which behaves in some ways like the specialization at $q=1$ of the Hall algebra of $\on{Rep}(\Q, \mathbf{F}_q)$. We prove the existence of a Hopf algebra homomorphism of $ \rho': \U(\n_+) \rightarrow \HQ$, from the enveloping algebra of the nilpotent part $\n_+$ of the Kac-Moody algebra with Dynkin diagram $\bar{\Q}$ - the underlying unoriented graph of $\Q$. We study $\rho'$ when $\Q$ is the Jordan quiver, a quiver of type $A$, the cyclic quiver, and a tree respectively.

Let $\CRF_S$ denote the category of $S$-colored rooted forests, and $\H_{\CRF_S}$ denote its Ringel-Hall algebra as introduced in \cite{KS}. We construct a homomorphism from a $K^+_0 (\CRF_S)$--graded version of the Hopf algebra of noncommutative symmetric functions to $\H_{\CRF_S}$. Dualizing, we obtain a homomorphism from the Connes-Kreimer Hopf algebra to a $K^+_0 (\CRF_S)$--graded version of the algebra of quasisymmetric functions. This homomorphism is a refinement of one considered by W. Zhao in \cite{Z}.